Gchil337.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGchil337.t1
Unique NameGchil337.t1
TypemRNA
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length284
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000212_piloncontigtig00000212_pilon:266480..267331 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog36630.CADNFIAP00008653
PFAMsECH_1
Max annot lvl4751|Fungi
KEGG rclassRC00770,RC00831,RC00834,RC01086,RC01095,RC01098,RC01103
KEGG koko:K07511
KEGG ReactionR02685,R03026,R03045,R04137,R04170,R04204,R04224,R04738,R04740,R04744,R04746,R04749,R05595,R06942
KEGG Pathwayko00062,ko00071,ko00280,ko00310,ko00380,ko00410,ko00627,ko00640,ko00650,ko00930,ko01100,ko01110,ko01120,ko01130,ko01200,ko01212,map00062,map00071,map00280,map00310,map00380,map00410,map00627,map00640,map00650,map00930,map01100,map01110,map01120,map01130,map01200,map01212
KEGG ModuleM00013,M00032,M00085,M00087
Evalue7.27e-52
EggNOG OGsCOG1024@1|root,KOG1680@2759|Eukaryota,38F58@33154|Opisthokonta,3NTZK@4751|Fungi,3QKS3@4890|Ascomycota,20CVD@147545|Eurotiomycetes,3SC42@5042|Eurotiales
EC4.2.1.17
DescriptionBelongs to the enoyl-CoA hydratase isomerase family
COG categoryI
BRITEko00000,ko00001,ko00002,ko01000
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil337Gchil337Gracilaria chilensis NLEC103_M9 malegenetig00000212_pilon 266480..267331 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil337.t1.stop1Gchil337.t1.stop1Gracilaria chilensis NLEC103_M9 malestop_codontig00000212_pilon 266480..266482 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil337.t1.CDS1Gchil337.t1.CDS1Gracilaria chilensis NLEC103_M9 maleCDStig00000212_pilon 266480..267331 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil337.t1.exon1Gchil337.t1.exon1Gracilaria chilensis NLEC103_M9 maleexontig00000212_pilon 266480..267331 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil337.t1.start1Gchil337.t1.start1Gracilaria chilensis NLEC103_M9 malestart_codontig00000212_pilon 267329..267331 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil337.t1Gchil337.t1Gracilaria chilensis NLEC103_M9 malepolypeptidetig00000212_pilon 266480..267331 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gchil337.t1 ID=Gchil337.t1|Name=Gchil337.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=284bp
MTSTVSKESERERIGLSLLLETSTSSGVRILTLNRPKARNALNRTLSNLL
CSALVRAESDSNIRVVVLSATAPVFCAGVDINELRKLTPFPAYEQQWLTD
WPRQMREMRKPVVAAVDGIALGGGFELVLLADVVFASKKAQFGLPEISLG
TIPGAGGTIRLVERVGKGRALSMMWTAERMGVEEAFTRGIVTKICEDAVQ
ESIVFAEAVADQSVHCVRMTKEMVKTRESEWNNRATMERMMYYLSFGSMD
FIDGCDHFVQGRERRERNKDDERPPEPHGVDCE*
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spliced messenger RNA

>Gchil337.t1 ID=Gchil337.t1|Name=Gchil337.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=852bp|location=Sequence derived from alignment at tig00000212_pilon:266480..267331- (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGACCTCGACTGTTTCAAAGGAGTCTGAACGCGAAAGGATTGGACTTAG
CCTGCTCCTGGAAACGAGCACTTCATCTGGAGTTCGAATATTAACTCTAA
ACCGACCAAAAGCTAGGAATGCTCTAAATCGCACACTGTCAAACCTACTA
TGTTCGGCTCTAGTACGGGCTGAGAGCGATTCCAACATTCGCGTTGTCGT
TCTTTCTGCGACTGCACCTGTGTTCTGTGCAGGCGTTGACATAAATGAGC
TAAGAAAGTTGACACCATTCCCAGCGTACGAACAGCAATGGCTTACTGAT
TGGCCTCGGCAGATGCGAGAGATGAGGAAACCGGTAGTGGCTGCTGTGGA
CGGAATTGCTCTTGGAGGTGGGTTTGAACTAGTTCTATTGGCGGACGTGG
TGTTTGCTTCGAAGAAAGCACAGTTCGGACTACCTGAGATCTCATTGGGA
ACTATTCCTGGCGCTGGGGGGACTATTAGACTTGTTGAAAGAGTAGGAAA
GGGGCGGGCTTTGAGTATGATGTGGACTGCAGAGCGAATGGGCGTTGAAG
AGGCATTCACGAGAGGTATTGTGACAAAAATTTGTGAGGACGCTGTTCAG
GAAAGCATTGTTTTTGCAGAGGCGGTCGCAGATCAGAGCGTGCATTGTGT
GAGAATGACTAAAGAAATGGTAAAGACAAGGGAGAGTGAATGGAACAATC
GAGCAACAATGGAACGGATGATGTACTACTTGAGCTTTGGTTCTATGGAC
TTCATAGACGGGTGTGATCATTTTGTTCAGGGGCGAGAGAGACGCGAGCG
GAATAAGGATGATGAAAGGCCTCCTGAGCCGCACGGGGTCGATTGCGAGT
GA
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protein sequence of Gchil337.t1

>Gchil337.t1 ID=Gchil337.t1|Name=Gchil337.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=284bp
MTSTVSKESERERIGLSLLLETSTSSGVRILTLNRPKARNALNRTLSNLL
CSALVRAESDSNIRVVVLSATAPVFCAGVDINELRKLTPFPAYEQQWLTD
WPRQMREMRKPVVAAVDGIALGGGFELVLLADVVFASKKAQFGLPEISLG
TIPGAGGTIRLVERVGKGRALSMMWTAERMGVEEAFTRGIVTKICEDAVQ
ESIVFAEAVADQSVHCVRMTKEMVKTRESEWNNRATMERMMYYLSFGSMD
FIDGCDHFVQGRERRERNKDDERPPEPHGVDCE*
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mRNA from alignment at tig00000212_pilon:266480..267331-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gchil337.t1 ID=Gchil337.t1|Name=Gchil337.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=852bp|location=Sequence derived from alignment at tig00000212_pilon:266480..267331- (Gracilaria chilensis NLEC103_M9 male)
ATGACCTCGACTGTTTCAAAGGAGTCTGAACGCGAAAGGATTGGACTTAG
CCTGCTCCTGGAAACGAGCACTTCATCTGGAGTTCGAATATTAACTCTAA
ACCGACCAAAAGCTAGGAATGCTCTAAATCGCACACTGTCAAACCTACTA
TGTTCGGCTCTAGTACGGGCTGAGAGCGATTCCAACATTCGCGTTGTCGT
TCTTTCTGCGACTGCACCTGTGTTCTGTGCAGGCGTTGACATAAATGAGC
TAAGAAAGTTGACACCATTCCCAGCGTACGAACAGCAATGGCTTACTGAT
TGGCCTCGGCAGATGCGAGAGATGAGGAAACCGGTAGTGGCTGCTGTGGA
CGGAATTGCTCTTGGAGGTGGGTTTGAACTAGTTCTATTGGCGGACGTGG
TGTTTGCTTCGAAGAAAGCACAGTTCGGACTACCTGAGATCTCATTGGGA
ACTATTCCTGGCGCTGGGGGGACTATTAGACTTGTTGAAAGAGTAGGAAA
GGGGCGGGCTTTGAGTATGATGTGGACTGCAGAGCGAATGGGCGTTGAAG
AGGCATTCACGAGAGGTATTGTGACAAAAATTTGTGAGGACGCTGTTCAG
GAAAGCATTGTTTTTGCAGAGGCGGTCGCAGATCAGAGCGTGCATTGTGT
GAGAATGACTAAAGAAATGGTAAAGACAAGGGAGAGTGAATGGAACAATC
GAGCAACAATGGAACGGATGATGTACTACTTGAGCTTTGGTTCTATGGAC
TTCATAGACGGGTGTGATCATTTTGTTCAGGGGCGAGAGAGACGCGAGCG
GAATAAGGATGATGAAAGGCCTCCTGAGCCGCACGGGGTCGATTGCGAGT
GA
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Coding sequence (CDS) from alignment at tig00000212_pilon:266480..267331-

>Gchil337.t1 ID=Gchil337.t1|Name=Gchil337.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=852bp|location=Sequence derived from alignment at tig00000212_pilon:266480..267331- (Gracilaria chilensis NLEC103_M9 male)
ATGACCTCGACTGTTTCAAAGGAGTCTGAACGCGAAAGGATTGGACTTAG
CCTGCTCCTGGAAACGAGCACTTCATCTGGAGTTCGAATATTAACTCTAA
ACCGACCAAAAGCTAGGAATGCTCTAAATCGCACACTGTCAAACCTACTA
TGTTCGGCTCTAGTACGGGCTGAGAGCGATTCCAACATTCGCGTTGTCGT
TCTTTCTGCGACTGCACCTGTGTTCTGTGCAGGCGTTGACATAAATGAGC
TAAGAAAGTTGACACCATTCCCAGCGTACGAACAGCAATGGCTTACTGAT
TGGCCTCGGCAGATGCGAGAGATGAGGAAACCGGTAGTGGCTGCTGTGGA
CGGAATTGCTCTTGGAGGTGGGTTTGAACTAGTTCTATTGGCGGACGTGG
TGTTTGCTTCGAAGAAAGCACAGTTCGGACTACCTGAGATCTCATTGGGA
ACTATTCCTGGCGCTGGGGGGACTATTAGACTTGTTGAAAGAGTAGGAAA
GGGGCGGGCTTTGAGTATGATGTGGACTGCAGAGCGAATGGGCGTTGAAG
AGGCATTCACGAGAGGTATTGTGACAAAAATTTGTGAGGACGCTGTTCAG
GAAAGCATTGTTTTTGCAGAGGCGGTCGCAGATCAGAGCGTGCATTGTGT
GAGAATGACTAAAGAAATGGTAAAGACAAGGGAGAGTGAATGGAACAATC
GAGCAACAATGGAACGGATGATGTACTACTTGAGCTTTGGTTCTATGGAC
TTCATAGACGGGTGTGATCATTTTGTTCAGGGGCGAGAGAGACGCGAGCG
GAATAAGGATGATGAAAGGCCTCCTGAGCCGCACGGGGTCGATTGCGAGT
GA
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