Gchil333.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGchil333.t1
Unique NameGchil333.t1
TypemRNA
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length246
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000212_piloncontigtig00000212_pilon:258253..258990 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog3067.XP_002946011.1
PFAMsPeptidase_C1
Max annot lvl2759|Eukaryota
Evalue1.8e-11
EggNOG OGsCOG4870@1|root,2S8PN@2759|Eukaryota
DescriptionBelongs to the peptidase C1 family
COG categoryO
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil333Gchil333Gracilaria chilensis NLEC103_M9 malegenetig00000212_pilon 258253..258990 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil333.t1.stop1Gchil333.t1.stop1Gracilaria chilensis NLEC103_M9 malestop_codontig00000212_pilon 258253..258255 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil333.t1.CDS1Gchil333.t1.CDS1Gracilaria chilensis NLEC103_M9 maleCDStig00000212_pilon 258253..258990 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil333.t1.exon1Gchil333.t1.exon1Gracilaria chilensis NLEC103_M9 maleexontig00000212_pilon 258253..258990 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil333.t1.start1Gchil333.t1.start1Gracilaria chilensis NLEC103_M9 malestart_codontig00000212_pilon 258988..258990 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil333.t1Gchil333.t1Gracilaria chilensis NLEC103_M9 malepolypeptidetig00000212_pilon 258253..258990 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gchil333.t1 ID=Gchil333.t1|Name=Gchil333.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=246bp
MMAISCFFGALMLAVVAALPLEDLAKLNIVKEVEFIDNAVRADLNFQTNS
SQVIDQFSVGSGRVTSANLRCSGICKASMSYNFTLNGISSEYLANKDSLF
RETLNSSQTTKYDQAKKNYGGGLNVPFLRAVGLNLGGSYSRENVDEASQR
LENYDSLADAARSIMESFEMVTVRVWGTMTVASYTAMRSEAVAWVKFAKV
TLLDGTQLRVVSASGADVSVTDENGNGSNMLTEDWVGGAEQKTDG*
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spliced messenger RNA

>Gchil333.t1 ID=Gchil333.t1|Name=Gchil333.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=738bp|location=Sequence derived from alignment at tig00000212_pilon:258253..258990- (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGATGGCCATCAGCTGCTTTTTTGGTGCTCTGATGCTTGCTGTCGTAGC
CGCTCTTCCACTCGAAGATTTGGCCAAATTGAATATCGTGAAGGAAGTTG
AGTTTATCGATAACGCAGTGCGTGCAGACTTGAATTTTCAAACAAACTCT
TCACAGGTCATCGATCAGTTCAGTGTTGGTAGTGGACGCGTAACAAGTGC
AAACCTTCGATGCAGCGGCATTTGTAAAGCATCAATGTCATATAATTTTA
CGTTGAATGGTATCTCTTCTGAATATCTTGCAAACAAAGATAGTTTGTTC
CGGGAAACTCTAAACAGCTCGCAGACGACCAAATATGACCAGGCTAAAAA
GAACTACGGAGGAGGCTTGAATGTTCCGTTTTTGCGAGCAGTTGGACTAA
ATCTTGGAGGTAGTTATTCTCGAGAGAACGTGGACGAGGCTTCTCAGCGC
CTTGAGAACTATGATTCACTTGCTGATGCTGCGCGAAGCATCATGGAGAG
CTTTGAAATGGTCACTGTTCGTGTGTGGGGTACCATGACTGTAGCGAGCT
ACACGGCCATGAGATCTGAAGCTGTTGCGTGGGTAAAGTTTGCCAAGGTA
ACACTACTTGATGGTACTCAACTCCGCGTTGTATCTGCTTCTGGTGCTGA
TGTTAGCGTCACTGATGAAAATGGCAATGGCTCTAATATGCTAACAGAGG
ACTGGGTTGGAGGTGCTGAACAAAAAACTGACGGTTAA
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protein sequence of Gchil333.t1

>Gchil333.t1 ID=Gchil333.t1|Name=Gchil333.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=246bp
MMAISCFFGALMLAVVAALPLEDLAKLNIVKEVEFIDNAVRADLNFQTNS
SQVIDQFSVGSGRVTSANLRCSGICKASMSYNFTLNGISSEYLANKDSLF
RETLNSSQTTKYDQAKKNYGGGLNVPFLRAVGLNLGGSYSRENVDEASQR
LENYDSLADAARSIMESFEMVTVRVWGTMTVASYTAMRSEAVAWVKFAKV
TLLDGTQLRVVSASGADVSVTDENGNGSNMLTEDWVGGAEQKTDG*
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mRNA from alignment at tig00000212_pilon:258253..258990-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gchil333.t1 ID=Gchil333.t1|Name=Gchil333.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=738bp|location=Sequence derived from alignment at tig00000212_pilon:258253..258990- (Gracilaria chilensis NLEC103_M9 male)
ATGATGGCCATCAGCTGCTTTTTTGGTGCTCTGATGCTTGCTGTCGTAGC
CGCTCTTCCACTCGAAGATTTGGCCAAATTGAATATCGTGAAGGAAGTTG
AGTTTATCGATAACGCAGTGCGTGCAGACTTGAATTTTCAAACAAACTCT
TCACAGGTCATCGATCAGTTCAGTGTTGGTAGTGGACGCGTAACAAGTGC
AAACCTTCGATGCAGCGGCATTTGTAAAGCATCAATGTCATATAATTTTA
CGTTGAATGGTATCTCTTCTGAATATCTTGCAAACAAAGATAGTTTGTTC
CGGGAAACTCTAAACAGCTCGCAGACGACCAAATATGACCAGGCTAAAAA
GAACTACGGAGGAGGCTTGAATGTTCCGTTTTTGCGAGCAGTTGGACTAA
ATCTTGGAGGTAGTTATTCTCGAGAGAACGTGGACGAGGCTTCTCAGCGC
CTTGAGAACTATGATTCACTTGCTGATGCTGCGCGAAGCATCATGGAGAG
CTTTGAAATGGTCACTGTTCGTGTGTGGGGTACCATGACTGTAGCGAGCT
ACACGGCCATGAGATCTGAAGCTGTTGCGTGGGTAAAGTTTGCCAAGGTA
ACACTACTTGATGGTACTCAACTCCGCGTTGTATCTGCTTCTGGTGCTGA
TGTTAGCGTCACTGATGAAAATGGCAATGGCTCTAATATGCTAACAGAGG
ACTGGGTTGGAGGTGCTGAACAAAAAACTGACGGTTAA
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Coding sequence (CDS) from alignment at tig00000212_pilon:258253..258990-

>Gchil333.t1 ID=Gchil333.t1|Name=Gchil333.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=738bp|location=Sequence derived from alignment at tig00000212_pilon:258253..258990- (Gracilaria chilensis NLEC103_M9 male)
ATGATGGCCATCAGCTGCTTTTTTGGTGCTCTGATGCTTGCTGTCGTAGC
CGCTCTTCCACTCGAAGATTTGGCCAAATTGAATATCGTGAAGGAAGTTG
AGTTTATCGATAACGCAGTGCGTGCAGACTTGAATTTTCAAACAAACTCT
TCACAGGTCATCGATCAGTTCAGTGTTGGTAGTGGACGCGTAACAAGTGC
AAACCTTCGATGCAGCGGCATTTGTAAAGCATCAATGTCATATAATTTTA
CGTTGAATGGTATCTCTTCTGAATATCTTGCAAACAAAGATAGTTTGTTC
CGGGAAACTCTAAACAGCTCGCAGACGACCAAATATGACCAGGCTAAAAA
GAACTACGGAGGAGGCTTGAATGTTCCGTTTTTGCGAGCAGTTGGACTAA
ATCTTGGAGGTAGTTATTCTCGAGAGAACGTGGACGAGGCTTCTCAGCGC
CTTGAGAACTATGATTCACTTGCTGATGCTGCGCGAAGCATCATGGAGAG
CTTTGAAATGGTCACTGTTCGTGTGTGGGGTACCATGACTGTAGCGAGCT
ACACGGCCATGAGATCTGAAGCTGTTGCGTGGGTAAAGTTTGCCAAGGTA
ACACTACTTGATGGTACTCAACTCCGCGTTGTATCTGCTTCTGGTGCTGA
TGTTAGCGTCACTGATGAAAATGGCAATGGCTCTAATATGCTAACAGAGG
ACTGGGTTGGAGGTGCTGAACAAAAAACTGACGGTTAA
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