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Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
| Seed ortholog | 130081.XP_005705480.1 |
| PFAMs | CBS,Voltage_CLC |
| Max annot lvl | 2759|Eukaryota |
| Evalue | 3.13e-92 |
| EggNOG OGs | COG0038@1|root,KOG0474@2759|Eukaryota |
| Description | Chloride Channel |
| COG category | P |
Relationships
This mRNA is a part of the following gene feature(s):
The following stop_codon feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following exon feature(s) are a part of this mRNA:
The following start_codon feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >Gchil6367.t1 ID=Gchil6367.t1|Name=Gchil6367.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=893bp MSQSFDDGDNYALSYAAFFAPRTHKFDTIDSRLSPSPANIESYFPKSSKQ RVRHLRLAGFLGLVIGFLFAIVGFFVDQLTRGLLIGLYTATARLFRLTNF WVAVLLFVALSTVFVLIASLMVVYIAPLGAGSGIPELKSYLNGVRVPGFL AINSFFVKAVGITFSLAGGLVCGKQGPMIHAGAILGAGMSQAASSRFSWR WNNSLFRVFRTEAWKRDFAAVGAAIGVAVAFGSPMGAWMWVYEEAATHWN WNLGVITLCGCLVGSTVIRILNLLAVGIPGDGFNGFFLNNIGKLAPLQNT DFLLKDIPVYVVIGVVGGLAGTILPLINKYITLFRYEHVKQPKRRLFESA FLAAATAFLRIVIPYIANDCQPSNNIIENALSISQIGDFSRFHCEEGQYS PWAAAIYNPADSVVRSLLYVTGSEKFSAAALAVALLYYFIFIIWTYGAAV PAGVFFPGFLLGSVYGRLIGMAMQAIFPSRTDISLGGFAFVGAVSALAGI TRTISVSVIALEAVGGYTGAFTAVFVSVIAKLTGDFLYKQGIYDLHIGLK GIPYLSTEIPQLESYVRLRVSDVMESKVIGVRRLSRISALVRMLGSNEHH SFPVFLKLNRKMQASSLDVPQLRDANAVAAEMAHVSNASLLASQLDQLEA HEIDKQVPASTIITADHVGLQATIFDEGATKLVTLTDKKEVLNRRKMKKK DIGVGDDFDKDSPPKHPNDNEASRNTSSESFQGTPPKRSSNESDVPEFEL VGSIDRGTLVALLKHECDKHERSTAEIDVDQDQISRENLDAAWPNSSLLK QNNESVVINRAKELKLLKSVIDLKPHINPDPLLMSDRAMPSTAYSLFRST GARHILVANMRGGRVCGILTRKDVLPESIEEVLNRMKGIKVE* back to topspliced messenger RNA >Gchil6367.t1 ID=Gchil6367.t1|Name=Gchil6367.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=2679bp|location=Sequence derived from alignment at tig00000196_pilon:353404..356082- (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.
ATGTCACAATCGTTCGACGATGGCGACAACTACGCTCTGTCCTACGCCGC CTTCTTCGCACCCCGCACGCACAAATTCGACACCATAGACTCTCGTCTAT CCCCGTCCCCGGCCAACATTGAGTCATATTTCCCCAAGTCCTCCAAACAA CGCGTCCGTCACCTGCGTCTGGCTGGTTTCCTGGGTTTGGTCATAGGTTT TTTGTTTGCTATAGTTGGCTTTTTTGTCGACCAGCTTACAAGGGGACTTC TGATTGGCCTCTACACAGCCACTGCCCGCCTGTTCCGCCTAACAAACTTC TGGGTTGCAGTTCTCCTTTTCGTCGCACTGTCCACCGTATTCGTTCTCAT TGCTTCGCTCATGGTTGTGTATATTGCACCGCTCGGAGCTGGTTCTGGCA TTCCAGAATTGAAAAGCTATCTGAACGGTGTCAGAGTACCGGGCTTTCTC GCTATCAACTCCTTCTTCGTCAAGGCCGTAGGTATAACATTCAGTTTAGC TGGAGGGCTTGTGTGCGGTAAACAAGGTCCTATGATTCATGCCGGAGCTA TTCTGGGTGCTGGAATGAGCCAGGCTGCAAGTTCTCGTTTCTCATGGCGT TGGAACAATTCACTCTTTCGCGTATTCAGAACGGAAGCGTGGAAGCGAGA CTTCGCAGCCGTTGGTGCTGCTATTGGAGTCGCAGTTGCTTTTGGATCTC CTATGGGGGCATGGATGTGGGTCTATGAAGAGGCCGCCACTCATTGGAAT TGGAACCTTGGTGTCATCACCTTGTGTGGGTGCCTTGTTGGTAGTACCGT CATACGCATTCTGAACCTGTTGGCTGTCGGAATCCCGGGCGATGGCTTTA ACGGTTTTTTTCTCAATAACATCGGTAAGCTTGCCCCTTTACAAAACACG GATTTTTTGCTCAAGGATATACCTGTCTATGTCGTTATAGGAGTCGTGGG AGGTTTGGCTGGAACGATTCTGCCCCTAATCAACAAATATATTACCTTAT TTCGTTACGAACACGTCAAGCAACCCAAACGTCGCCTGTTCGAAAGCGCA TTTCTTGCTGCGGCAACGGCCTTCTTGCGGATCGTTATCCCATACATTGC CAATGATTGTCAGCCTTCAAACAACATCATCGAAAATGCTCTCAGTATCT CACAAATCGGAGACTTCTCCCGATTTCATTGCGAGGAAGGTCAGTACTCT CCCTGGGCGGCCGCGATTTATAACCCTGCAGACTCTGTTGTGCGTTCTCT TCTTTACGTTACTGGTTCTGAAAAATTTTCTGCTGCGGCCTTAGCAGTGG CTCTTCTGTACTACTTCATTTTCATTATTTGGACTTATGGCGCTGCGGTT CCTGCCGGTGTATTCTTCCCTGGGTTTTTGTTGGGTAGTGTATATGGCCG CCTCATTGGGATGGCGATGCAAGCAATATTTCCGTCGCGCACCGACATTT CTCTAGGGGGATTTGCATTCGTGGGAGCCGTTTCGGCGCTTGCCGGGATT ACTAGAACCATATCGGTATCAGTAATCGCGCTCGAAGCCGTTGGAGGATA CACCGGTGCTTTTACCGCTGTTTTTGTTTCCGTCATTGCCAAGCTGACTG GCGACTTTTTGTACAAACAAGGAATATATGATCTTCACATCGGTTTGAAG GGAATTCCATACTTGTCGACTGAAATCCCTCAGCTTGAATCATATGTTCG CCTTCGTGTGTCTGATGTAATGGAAAGCAAGGTTATTGGTGTTCGCCGTC TTTCAAGGATTTCTGCTCTTGTTAGAATGCTCGGATCTAATGAGCACCAT TCATTTCCCGTGTTTTTGAAGCTCAATCGAAAAATGCAAGCTTCGTCGCT TGATGTGCCTCAACTACGAGATGCCAATGCAGTTGCGGCGGAAATGGCTC ATGTGTCCAATGCCTCACTACTCGCTTCTCAATTAGATCAACTAGAAGCC CATGAAATCGACAAACAAGTTCCTGCTTCAACCATCATTACCGCAGATCA TGTCGGCTTGCAGGCAACAATATTTGACGAAGGAGCAACCAAGCTTGTTA CCCTCACAGACAAGAAGGAGGTGCTTAACCGCAGGAAAATGAAGAAGAAA GACATTGGTGTCGGGGATGACTTCGATAAAGATTCACCTCCCAAGCATCC AAACGACAATGAAGCTTCTCGAAATACGTCTTCAGAATCTTTCCAAGGAA CTCCACCGAAGCGGTCGTCAAATGAAAGTGATGTGCCTGAATTCGAACTT GTCGGGAGCATCGACAGAGGAACACTGGTGGCTCTTCTGAAACATGAATG TGACAAGCATGAACGTTCAACTGCCGAGATCGACGTAGATCAAGACCAGA TCTCAAGAGAAAATCTTGATGCGGCGTGGCCTAATTCGTCGCTACTGAAG CAAAATAACGAAAGTGTAGTCATTAATCGAGCAAAAGAGTTGAAGCTATT GAAGTCTGTGATCGATCTAAAGCCGCACATTAATCCAGATCCGCTGTTGA TGTCTGATCGAGCAATGCCTTCTACGGCGTATTCCCTTTTCCGCAGTACT GGAGCTCGTCATATACTTGTTGCGAATATGAGGGGTGGACGAGTGTGTGG GATATTGACACGCAAAGACGTGTTGCCGGAAAGCATAGAGGAAGTCCTCA ACCGCATGAAAGGGATTAAGGTAGAGTAA back to topprotein sequence of Gchil6367.t1 >Gchil6367.t1 ID=Gchil6367.t1|Name=Gchil6367.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=893bp
MSQSFDDGDNYALSYAAFFAPRTHKFDTIDSRLSPSPANIESYFPKSSKQ RVRHLRLAGFLGLVIGFLFAIVGFFVDQLTRGLLIGLYTATARLFRLTNF WVAVLLFVALSTVFVLIASLMVVYIAPLGAGSGIPELKSYLNGVRVPGFL AINSFFVKAVGITFSLAGGLVCGKQGPMIHAGAILGAGMSQAASSRFSWR WNNSLFRVFRTEAWKRDFAAVGAAIGVAVAFGSPMGAWMWVYEEAATHWN WNLGVITLCGCLVGSTVIRILNLLAVGIPGDGFNGFFLNNIGKLAPLQNT DFLLKDIPVYVVIGVVGGLAGTILPLINKYITLFRYEHVKQPKRRLFESA FLAAATAFLRIVIPYIANDCQPSNNIIENALSISQIGDFSRFHCEEGQYS PWAAAIYNPADSVVRSLLYVTGSEKFSAAALAVALLYYFIFIIWTYGAAV PAGVFFPGFLLGSVYGRLIGMAMQAIFPSRTDISLGGFAFVGAVSALAGI TRTISVSVIALEAVGGYTGAFTAVFVSVIAKLTGDFLYKQGIYDLHIGLK GIPYLSTEIPQLESYVRLRVSDVMESKVIGVRRLSRISALVRMLGSNEHH SFPVFLKLNRKMQASSLDVPQLRDANAVAAEMAHVSNASLLASQLDQLEA HEIDKQVPASTIITADHVGLQATIFDEGATKLVTLTDKKEVLNRRKMKKK DIGVGDDFDKDSPPKHPNDNEASRNTSSESFQGTPPKRSSNESDVPEFEL VGSIDRGTLVALLKHECDKHERSTAEIDVDQDQISRENLDAAWPNSSLLK QNNESVVINRAKELKLLKSVIDLKPHINPDPLLMSDRAMPSTAYSLFRST GARHILVANMRGGRVCGILTRKDVLPESIEEVLNRMKGIKVE* back to topmRNA from alignment at tig00000196_pilon:353404..356082- Legend: polypeptideCDSexonstart_codonstop_codon Hold the cursor over a type above to highlight its positions in the sequence below. >Gchil6367.t1 ID=Gchil6367.t1|Name=Gchil6367.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=2679bp|location=Sequence derived from alignment at tig00000196_pilon:353404..356082- (Gracilaria chilensis NLEC103_M9 male) ATGTCACAATCGTTCGACGATGGCGACAACTACGCTCTGTCCTACGCCGC
CTTCTTCGCACCCCGCACGCACAAATTCGACACCATAGACTCTCGTCTAT
CCCCGTCCCCGGCCAACATTGAGTCATATTTCCCCAAGTCCTCCAAACAA
CGCGTCCGTCACCTGCGTCTGGCTGGTTTCCTGGGTTTGGTCATAGGTTT
TTTGTTTGCTATAGTTGGCTTTTTTGTCGACCAGCTTACAAGGGGACTTC
TGATTGGCCTCTACACAGCCACTGCCCGCCTGTTCCGCCTAACAAACTTC
TGGGTTGCAGTTCTCCTTTTCGTCGCACTGTCCACCGTATTCGTTCTCAT
TGCTTCGCTCATGGTTGTGTATATTGCACCGCTCGGAGCTGGTTCTGGCA
TTCCAGAATTGAAAAGCTATCTGAACGGTGTCAGAGTACCGGGCTTTCTC
GCTATCAACTCCTTCTTCGTCAAGGCCGTAGGTATAACATTCAGTTTAGC
TGGAGGGCTTGTGTGCGGTAAACAAGGTCCTATGATTCATGCCGGAGCTA
TTCTGGGTGCTGGAATGAGCCAGGCTGCAAGTTCTCGTTTCTCATGGCGT
TGGAACAATTCACTCTTTCGCGTATTCAGAACGGAAGCGTGGAAGCGAGA
CTTCGCAGCCGTTGGTGCTGCTATTGGAGTCGCAGTTGCTTTTGGATCTC
CTATGGGGGCATGGATGTGGGTCTATGAAGAGGCCGCCACTCATTGGAAT
TGGAACCTTGGTGTCATCACCTTGTGTGGGTGCCTTGTTGGTAGTACCGT
CATACGCATTCTGAACCTGTTGGCTGTCGGAATCCCGGGCGATGGCTTTA
ACGGTTTTTTTCTCAATAACATCGGTAAGCTTGCCCCTTTACAAAACACG
GATTTTTTGCTCAAGGATATACCTGTCTATGTCGTTATAGGAGTCGTGGG
AGGTTTGGCTGGAACGATTCTGCCCCTAATCAACAAATATATTACCTTAT
TTCGTTACGAACACGTCAAGCAACCCAAACGTCGCCTGTTCGAAAGCGCA
TTTCTTGCTGCGGCAACGGCCTTCTTGCGGATCGTTATCCCATACATTGC
CAATGATTGTCAGCCTTCAAACAACATCATCGAAAATGCTCTCAGTATCT
CACAAATCGGAGACTTCTCCCGATTTCATTGCGAGGAAGGTCAGTACTCT
CCCTGGGCGGCCGCGATTTATAACCCTGCAGACTCTGTTGTGCGTTCTCT
TCTTTACGTTACTGGTTCTGAAAAATTTTCTGCTGCGGCCTTAGCAGTGG
CTCTTCTGTACTACTTCATTTTCATTATTTGGACTTATGGCGCTGCGGTT
CCTGCCGGTGTATTCTTCCCTGGGTTTTTGTTGGGTAGTGTATATGGCCG
CCTCATTGGGATGGCGATGCAAGCAATATTTCCGTCGCGCACCGACATTT
CTCTAGGGGGATTTGCATTCGTGGGAGCCGTTTCGGCGCTTGCCGGGATT
ACTAGAACCATATCGGTATCAGTAATCGCGCTCGAAGCCGTTGGAGGATA
CACCGGTGCTTTTACCGCTGTTTTTGTTTCCGTCATTGCCAAGCTGACTG
GCGACTTTTTGTACAAACAAGGAATATATGATCTTCACATCGGTTTGAAG
GGAATTCCATACTTGTCGACTGAAATCCCTCAGCTTGAATCATATGTTCG
CCTTCGTGTGTCTGATGTAATGGAAAGCAAGGTTATTGGTGTTCGCCGTC
TTTCAAGGATTTCTGCTCTTGTTAGAATGCTCGGATCTAATGAGCACCAT
TCATTTCCCGTGTTTTTGAAGCTCAATCGAAAAATGCAAGCTTCGTCGCT
TGATGTGCCTCAACTACGAGATGCCAATGCAGTTGCGGCGGAAATGGCTC
ATGTGTCCAATGCCTCACTACTCGCTTCTCAATTAGATCAACTAGAAGCC
CATGAAATCGACAAACAAGTTCCTGCTTCAACCATCATTACCGCAGATCA
TGTCGGCTTGCAGGCAACAATATTTGACGAAGGAGCAACCAAGCTTGTTA
CCCTCACAGACAAGAAGGAGGTGCTTAACCGCAGGAAAATGAAGAAGAAA
GACATTGGTGTCGGGGATGACTTCGATAAAGATTCACCTCCCAAGCATCC
AAACGACAATGAAGCTTCTCGAAATACGTCTTCAGAATCTTTCCAAGGAA
CTCCACCGAAGCGGTCGTCAAATGAAAGTGATGTGCCTGAATTCGAACTT
GTCGGGAGCATCGACAGAGGAACACTGGTGGCTCTTCTGAAACATGAATG
TGACAAGCATGAACGTTCAACTGCCGAGATCGACGTAGATCAAGACCAGA
TCTCAAGAGAAAATCTTGATGCGGCGTGGCCTAATTCGTCGCTACTGAAG
CAAAATAACGAAAGTGTAGTCATTAATCGAGCAAAAGAGTTGAAGCTATT
GAAGTCTGTGATCGATCTAAAGCCGCACATTAATCCAGATCCGCTGTTGA
TGTCTGATCGAGCAATGCCTTCTACGGCGTATTCCCTTTTCCGCAGTACT
GGAGCTCGTCATATACTTGTTGCGAATATGAGGGGTGGACGAGTGTGTGG
GATATTGACACGCAAAGACGTGTTGCCGGAAAGCATAGAGGAAGTCCTCA
ACCGCATGAAAGGGATTAAGGTAGAGTAA back to topCoding sequence (CDS) from alignment at tig00000196_pilon:353404..356082- >Gchil6367.t1 ID=Gchil6367.t1|Name=Gchil6367.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=2679bp|location=Sequence derived from alignment at tig00000196_pilon:353404..356082- (Gracilaria chilensis NLEC103_M9 male) ATGTCACAATCGTTCGACGATGGCGACAACTACGCTCTGTCCTACGCCGC CTTCTTCGCACCCCGCACGCACAAATTCGACACCATAGACTCTCGTCTAT CCCCGTCCCCGGCCAACATTGAGTCATATTTCCCCAAGTCCTCCAAACAA CGCGTCCGTCACCTGCGTCTGGCTGGTTTCCTGGGTTTGGTCATAGGTTT TTTGTTTGCTATAGTTGGCTTTTTTGTCGACCAGCTTACAAGGGGACTTC TGATTGGCCTCTACACAGCCACTGCCCGCCTGTTCCGCCTAACAAACTTC TGGGTTGCAGTTCTCCTTTTCGTCGCACTGTCCACCGTATTCGTTCTCAT TGCTTCGCTCATGGTTGTGTATATTGCACCGCTCGGAGCTGGTTCTGGCA TTCCAGAATTGAAAAGCTATCTGAACGGTGTCAGAGTACCGGGCTTTCTC GCTATCAACTCCTTCTTCGTCAAGGCCGTAGGTATAACATTCAGTTTAGC TGGAGGGCTTGTGTGCGGTAAACAAGGTCCTATGATTCATGCCGGAGCTA TTCTGGGTGCTGGAATGAGCCAGGCTGCAAGTTCTCGTTTCTCATGGCGT TGGAACAATTCACTCTTTCGCGTATTCAGAACGGAAGCGTGGAAGCGAGA CTTCGCAGCCGTTGGTGCTGCTATTGGAGTCGCAGTTGCTTTTGGATCTC CTATGGGGGCATGGATGTGGGTCTATGAAGAGGCCGCCACTCATTGGAAT TGGAACCTTGGTGTCATCACCTTGTGTGGGTGCCTTGTTGGTAGTACCGT CATACGCATTCTGAACCTGTTGGCTGTCGGAATCCCGGGCGATGGCTTTA ACGGTTTTTTTCTCAATAACATCGGTAAGCTTGCCCCTTTACAAAACACG GATTTTTTGCTCAAGGATATACCTGTCTATGTCGTTATAGGAGTCGTGGG AGGTTTGGCTGGAACGATTCTGCCCCTAATCAACAAATATATTACCTTAT TTCGTTACGAACACGTCAAGCAACCCAAACGTCGCCTGTTCGAAAGCGCA TTTCTTGCTGCGGCAACGGCCTTCTTGCGGATCGTTATCCCATACATTGC CAATGATTGTCAGCCTTCAAACAACATCATCGAAAATGCTCTCAGTATCT CACAAATCGGAGACTTCTCCCGATTTCATTGCGAGGAAGGTCAGTACTCT CCCTGGGCGGCCGCGATTTATAACCCTGCAGACTCTGTTGTGCGTTCTCT TCTTTACGTTACTGGTTCTGAAAAATTTTCTGCTGCGGCCTTAGCAGTGG CTCTTCTGTACTACTTCATTTTCATTATTTGGACTTATGGCGCTGCGGTT CCTGCCGGTGTATTCTTCCCTGGGTTTTTGTTGGGTAGTGTATATGGCCG CCTCATTGGGATGGCGATGCAAGCAATATTTCCGTCGCGCACCGACATTT CTCTAGGGGGATTTGCATTCGTGGGAGCCGTTTCGGCGCTTGCCGGGATT ACTAGAACCATATCGGTATCAGTAATCGCGCTCGAAGCCGTTGGAGGATA CACCGGTGCTTTTACCGCTGTTTTTGTTTCCGTCATTGCCAAGCTGACTG GCGACTTTTTGTACAAACAAGGAATATATGATCTTCACATCGGTTTGAAG GGAATTCCATACTTGTCGACTGAAATCCCTCAGCTTGAATCATATGTTCG CCTTCGTGTGTCTGATGTAATGGAAAGCAAGGTTATTGGTGTTCGCCGTC TTTCAAGGATTTCTGCTCTTGTTAGAATGCTCGGATCTAATGAGCACCAT TCATTTCCCGTGTTTTTGAAGCTCAATCGAAAAATGCAAGCTTCGTCGCT TGATGTGCCTCAACTACGAGATGCCAATGCAGTTGCGGCGGAAATGGCTC ATGTGTCCAATGCCTCACTACTCGCTTCTCAATTAGATCAACTAGAAGCC CATGAAATCGACAAACAAGTTCCTGCTTCAACCATCATTACCGCAGATCA TGTCGGCTTGCAGGCAACAATATTTGACGAAGGAGCAACCAAGCTTGTTA CCCTCACAGACAAGAAGGAGGTGCTTAACCGCAGGAAAATGAAGAAGAAA GACATTGGTGTCGGGGATGACTTCGATAAAGATTCACCTCCCAAGCATCC AAACGACAATGAAGCTTCTCGAAATACGTCTTCAGAATCTTTCCAAGGAA CTCCACCGAAGCGGTCGTCAAATGAAAGTGATGTGCCTGAATTCGAACTT GTCGGGAGCATCGACAGAGGAACACTGGTGGCTCTTCTGAAACATGAATG TGACAAGCATGAACGTTCAACTGCCGAGATCGACGTAGATCAAGACCAGA TCTCAAGAGAAAATCTTGATGCGGCGTGGCCTAATTCGTCGCTACTGAAG CAAAATAACGAAAGTGTAGTCATTAATCGAGCAAAAGAGTTGAAGCTATT GAAGTCTGTGATCGATCTAAAGCCGCACATTAATCCAGATCCGCTGTTGA TGTCTGATCGAGCAATGCCTTCTACGGCGTATTCCCTTTTCCGCAGTACT GGAGCTCGTCATATACTTGTTGCGAATATGAGGGGTGGACGAGTGTGTGG GATATTGACACGCAAAGACGTGTTGCCGGAAAGCATAGAGGAAGTCCTCA ACCGCATGAAAGGGATTAAGGTAGAGTAA back to top
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