Gchil7540.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gchil7540.t1
Unique Name	Gchil7540.t1
Type	mRNA
Organism	Gracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length	644

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
tig00000007_pilon	contig	tig00000007_pilon:1803189..1805120 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria chilensis NLEC103_M9 male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	130081.XP_005704310.1
PFAMs	Asp
Max annot lvl	2759\|Eukaryota
KEGG ko	ko:K01379,ko:K04521,ko:K06002,ko:K07747
KEGG Pathway	ko04071,ko04140,ko04142,ko04210,ko04915,ko04974,ko05010,ko05152,map04071,map04140,map04142,map04210,map04915,map04974,map05010,map05152
Evalue	2.22e-115
EggNOG OGs	KOG1339@1\|root,KOG1339@2759\|Eukaryota
EC	3.4.23.1,3.4.23.45,3.4.23.46,3.4.23.5
Description	aspartic-type endopeptidase activity
COG category	M
BRITE	ko00000,ko00001,ko01000,ko01002,ko04147

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gchil7540	Gchil7540	Gracilaria chilensis NLEC103_M9 male	gene	tig00000007_pilon 1803189..1805120 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil7540.t1.start1	Gchil7540.t1.start1	Gracilaria chilensis NLEC103_M9 male	start_codon	tig00000007_pilon 1803189..1803191 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil7540.t1.CDS1	Gchil7540.t1.CDS1	Gracilaria chilensis NLEC103_M9 male	CDS	tig00000007_pilon 1803189..1805120 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil7540.t1.exon1	Gchil7540.t1.exon1	Gracilaria chilensis NLEC103_M9 male	exon	tig00000007_pilon 1803189..1805120 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil7540.t1.stop1	Gchil7540.t1.stop1	Gracilaria chilensis NLEC103_M9 male	stop_codon	tig00000007_pilon 1805118..1805120 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil7540.t1	Gchil7540.t1	Gracilaria chilensis NLEC103_M9 male	polypeptide	tig00000007_pilon 1803189..1805120 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at tig00000007_pilon:1803189..1805120+
coding sequence from alignment at tig00000007_pilon:1803189..1805120+

mRNA sequence

>Gchil7540.t1 ID=Gchil7540.t1|Name=Gchil7540.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=644bp
MANRFCLLTWAVGLCSILFFSSSTARSVSFTLEKRQPKPLLPNSTRGFPQ
HLQIHRLEQYDSSHNSWSHAHSNLRWTSRYHDVQLYGGMVAVGEYYAKVK
IGGQTLRVQIDTGSATLAVPLKECVNCKRGDMRYSLGDSKTGIARYIGCE
DNDCGEDSCTSFGCSRCSARRACCAKSDETKCAFHLNFGDGSGAKGVLVY
DVMSWGDVDFPVYAGGIMSDSPDFERSQVDGILGMAYPSLACNPSCIKPT
FESMLQKYSDMKDVFSICITYDSGRIVLGEYDPALSTKNISWVNLELSEP
PTFYSFPLIGNMRVNSEELVLPSYSRAIVDSGTTLIVFSHSTFNRFKGYL
QDNFCHVPGLCNSDSWFRPAHCTQIAEKDRIALPTLSFSVTGFNITLGPS
DYLINYASKGSDFWCVGIMALDSMSGGVDVIFGNTVMKKYVTVYDRQHSR
VGFAESDTNCGLTAKDSIPAAIPATSPGDPQELNKGQGASQNAEEKPSTA
GSDAEDEDPVFDMGEGKDNAQAENVEQKGSGTVISSTPCSVAPNCSACAA
MKGECMWDGASQKCVQGQSFALMCTIDNLAGRLVYVIGGAVVATVTLVAV
VAFAVRKRSAPSDTAEEHEPLAHSEDETRDAFALEDDETEDQA*

spliced messenger RNA

>Gchil7540.t1 ID=Gchil7540.t1|Name=Gchil7540.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1932bp|location=Sequence derived from alignment at tig00000007_pilon:1803189..1805120+ (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGCAAACAGGTTTTGCCTCTTGACATGGGCTGTCGGTTTATGTTCCAT
TCTTTTCTTTTCTTCCTCCACTGCCCGGTCTGTTTCATTCACGCTCGAAA
AGCGTCAACCCAAGCCACTCTTGCCGAACTCAACTCGGGGCTTTCCTCAA
CATCTTCAAATTCACAGATTGGAACAGTACGATTCTTCTCATAATAGTTG
GAGCCACGCGCACTCGAACTTGAGATGGACCTCACGCTATCATGATGTGC
AATTGTACGGCGGAATGGTTGCAGTTGGCGAGTATTATGCCAAAGTCAAA
ATAGGAGGTCAAACGTTGCGGGTTCAGATCGATACTGGATCTGCAACTTT
AGCTGTCCCTCTCAAAGAATGCGTGAATTGTAAACGTGGGGACATGCGTT
ACTCTTTAGGTGACAGTAAGACTGGAATTGCTCGATATATTGGGTGCGAA
GACAATGATTGTGGAGAAGATAGTTGTACATCTTTTGGTTGCTCTCGATG
TTCGGCACGCAGGGCGTGTTGCGCGAAATCAGACGAAACAAAATGTGCTT
TTCACCTGAACTTTGGTGACGGCAGCGGCGCAAAAGGCGTTCTCGTCTAT
GATGTCATGAGTTGGGGCGATGTGGACTTTCCTGTCTACGCAGGGGGGAT
CATGAGTGACTCGCCTGATTTTGAGCGGTCGCAGGTGGATGGAATTCTTG
GTATGGCGTACCCAAGTCTTGCTTGCAATCCTAGTTGCATCAAACCCACA
TTTGAATCAATGCTGCAGAAATATTCTGATATGAAGGATGTGTTCTCGAT
ATGCATAACGTATGACTCCGGTCGGATCGTCCTTGGTGAATATGATCCTG
CGCTGTCAACAAAGAACATATCTTGGGTCAATCTAGAGCTTTCTGAACCT
CCTACATTCTATTCGTTTCCTTTGATTGGGAATATGCGTGTCAATAGTGA
AGAGCTCGTTTTGCCATCGTACTCCCGGGCTATCGTGGATTCAGGCACTA
CGCTTATAGTGTTTTCGCATAGTACTTTCAATAGGTTCAAGGGATATTTG
CAAGACAACTTTTGCCATGTTCCTGGTTTGTGCAATTCTGACTCGTGGTT
TCGTCCAGCGCACTGCACACAAATCGCCGAGAAAGACCGAATAGCTCTAC
CGACGCTTTCGTTTAGTGTGACAGGTTTTAATATTACTTTAGGACCTTCA
GACTATCTCATTAACTATGCATCGAAAGGAAGCGATTTCTGGTGCGTCGG
GATAATGGCACTGGACTCAATGAGTGGGGGCGTAGATGTCATTTTCGGAA
ATACTGTAATGAAGAAGTATGTGACTGTATATGACCGGCAGCACTCACGA
GTTGGATTTGCCGAATCGGATACGAATTGCGGTCTTACCGCAAAGGATTC
TATACCTGCAGCCATACCAGCTACGAGTCCAGGGGACCCACAAGAGTTAA
ATAAGGGACAGGGAGCGTCACAGAATGCTGAAGAGAAACCTTCAACCGCT
GGAAGTGATGCAGAGGATGAAGATCCGGTGTTTGATATGGGTGAAGGCAA
GGATAACGCCCAGGCGGAGAATGTGGAACAAAAAGGATCTGGTACTGTTA
TCAGCAGCACCCCTTGTTCGGTGGCTCCCAACTGTTCCGCATGTGCGGCC
ATGAAAGGCGAATGCATGTGGGACGGGGCTTCCCAAAAGTGTGTGCAAGG
GCAAAGTTTTGCGCTGATGTGTACTATAGACAACCTTGCTGGTAGGCTGG
TATACGTTATTGGCGGGGCAGTTGTAGCTACGGTGACGCTGGTTGCCGTG
GTTGCCTTCGCAGTTCGCAAGAGAAGTGCTCCATCAGACACTGCAGAAGA
ACATGAGCCACTTGCGCACAGCGAGGATGAAACTCGAGATGCTTTTGCGC
TGGAAGACGATGAAACAGAAGACCAGGCTTAA

protein sequence of Gchil7540.t1

>Gchil7540.t1 ID=Gchil7540.t1|Name=Gchil7540.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=644bp
MANRFCLLTWAVGLCSILFFSSSTARSVSFTLEKRQPKPLLPNSTRGFPQ
HLQIHRLEQYDSSHNSWSHAHSNLRWTSRYHDVQLYGGMVAVGEYYAKVK
IGGQTLRVQIDTGSATLAVPLKECVNCKRGDMRYSLGDSKTGIARYIGCE
DNDCGEDSCTSFGCSRCSARRACCAKSDETKCAFHLNFGDGSGAKGVLVY
DVMSWGDVDFPVYAGGIMSDSPDFERSQVDGILGMAYPSLACNPSCIKPT
FESMLQKYSDMKDVFSICITYDSGRIVLGEYDPALSTKNISWVNLELSEP
PTFYSFPLIGNMRVNSEELVLPSYSRAIVDSGTTLIVFSHSTFNRFKGYL
QDNFCHVPGLCNSDSWFRPAHCTQIAEKDRIALPTLSFSVTGFNITLGPS
DYLINYASKGSDFWCVGIMALDSMSGGVDVIFGNTVMKKYVTVYDRQHSR
VGFAESDTNCGLTAKDSIPAAIPATSPGDPQELNKGQGASQNAEEKPSTA
GSDAEDEDPVFDMGEGKDNAQAENVEQKGSGTVISSTPCSVAPNCSACAA
MKGECMWDGASQKCVQGQSFALMCTIDNLAGRLVYVIGGAVVATVTLVAV
VAFAVRKRSAPSDTAEEHEPLAHSEDETRDAFALEDDETEDQA*

mRNA from alignment at tig00000007_pilon:1803189..1805120+

Legend: start_codonpolypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gchil7540.t1 ID=Gchil7540.t1|Name=Gchil7540.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1932bp|location=Sequence derived from alignment at tig00000007_pilon:1803189..1805120+ (Gracilaria chilensis NLEC103_M9 male)
ATGGCAAACAGGTTTTGCCTCTTGACATGGGCTGTCGGTTTATGTTCCAT
TCTTTTCTTTTCTTCCTCCACTGCCCGGTCTGTTTCATTCACGCTCGAAA
AGCGTCAACCCAAGCCACTCTTGCCGAACTCAACTCGGGGCTTTCCTCAA
CATCTTCAAATTCACAGATTGGAACAGTACGATTCTTCTCATAATAGTTG
GAGCCACGCGCACTCGAACTTGAGATGGACCTCACGCTATCATGATGTGC
AATTGTACGGCGGAATGGTTGCAGTTGGCGAGTATTATGCCAAAGTCAAA
ATAGGAGGTCAAACGTTGCGGGTTCAGATCGATACTGGATCTGCAACTTT
AGCTGTCCCTCTCAAAGAATGCGTGAATTGTAAACGTGGGGACATGCGTT
ACTCTTTAGGTGACAGTAAGACTGGAATTGCTCGATATATTGGGTGCGAA
GACAATGATTGTGGAGAAGATAGTTGTACATCTTTTGGTTGCTCTCGATG
TTCGGCACGCAGGGCGTGTTGCGCGAAATCAGACGAAACAAAATGTGCTT
TTCACCTGAACTTTGGTGACGGCAGCGGCGCAAAAGGCGTTCTCGTCTAT
GATGTCATGAGTTGGGGCGATGTGGACTTTCCTGTCTACGCAGGGGGGAT
CATGAGTGACTCGCCTGATTTTGAGCGGTCGCAGGTGGATGGAATTCTTG
GTATGGCGTACCCAAGTCTTGCTTGCAATCCTAGTTGCATCAAACCCACA
TTTGAATCAATGCTGCAGAAATATTCTGATATGAAGGATGTGTTCTCGAT
ATGCATAACGTATGACTCCGGTCGGATCGTCCTTGGTGAATATGATCCTG
CGCTGTCAACAAAGAACATATCTTGGGTCAATCTAGAGCTTTCTGAACCT
CCTACATTCTATTCGTTTCCTTTGATTGGGAATATGCGTGTCAATAGTGA
AGAGCTCGTTTTGCCATCGTACTCCCGGGCTATCGTGGATTCAGGCACTA
CGCTTATAGTGTTTTCGCATAGTACTTTCAATAGGTTCAAGGGATATTTG
CAAGACAACTTTTGCCATGTTCCTGGTTTGTGCAATTCTGACTCGTGGTT
TCGTCCAGCGCACTGCACACAAATCGCCGAGAAAGACCGAATAGCTCTAC
CGACGCTTTCGTTTAGTGTGACAGGTTTTAATATTACTTTAGGACCTTCA
GACTATCTCATTAACTATGCATCGAAAGGAAGCGATTTCTGGTGCGTCGG
GATAATGGCACTGGACTCAATGAGTGGGGGCGTAGATGTCATTTTCGGAA
ATACTGTAATGAAGAAGTATGTGACTGTATATGACCGGCAGCACTCACGA
GTTGGATTTGCCGAATCGGATACGAATTGCGGTCTTACCGCAAAGGATTC
TATACCTGCAGCCATACCAGCTACGAGTCCAGGGGACCCACAAGAGTTAA
ATAAGGGACAGGGAGCGTCACAGAATGCTGAAGAGAAACCTTCAACCGCT
GGAAGTGATGCAGAGGATGAAGATCCGGTGTTTGATATGGGTGAAGGCAA
GGATAACGCCCAGGCGGAGAATGTGGAACAAAAAGGATCTGGTACTGTTA
TCAGCAGCACCCCTTGTTCGGTGGCTCCCAACTGTTCCGCATGTGCGGCC
ATGAAAGGCGAATGCATGTGGGACGGGGCTTCCCAAAAGTGTGTGCAAGG
GCAAAGTTTTGCGCTGATGTGTACTATAGACAACCTTGCTGGTAGGCTGG
TATACGTTATTGGCGGGGCAGTTGTAGCTACGGTGACGCTGGTTGCCGTG
GTTGCCTTCGCAGTTCGCAAGAGAAGTGCTCCATCAGACACTGCAGAAGA
ACATGAGCCACTTGCGCACAGCGAGGATGAAACTCGAGATGCTTTTGCGC
TGGAAGACGATGAAACAGAAGACCAGGCTTAA

Coding sequence (CDS) from alignment at tig00000007_pilon:1803189..1805120+

>Gchil7540.t1 ID=Gchil7540.t1|Name=Gchil7540.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=1932bp|location=Sequence derived from alignment at tig00000007_pilon:1803189..1805120+ (Gracilaria chilensis NLEC103_M9 male)
ATGGCAAACAGGTTTTGCCTCTTGACATGGGCTGTCGGTTTATGTTCCAT
TCTTTTCTTTTCTTCCTCCACTGCCCGGTCTGTTTCATTCACGCTCGAAA
AGCGTCAACCCAAGCCACTCTTGCCGAACTCAACTCGGGGCTTTCCTCAA
CATCTTCAAATTCACAGATTGGAACAGTACGATTCTTCTCATAATAGTTG
GAGCCACGCGCACTCGAACTTGAGATGGACCTCACGCTATCATGATGTGC
AATTGTACGGCGGAATGGTTGCAGTTGGCGAGTATTATGCCAAAGTCAAA
ATAGGAGGTCAAACGTTGCGGGTTCAGATCGATACTGGATCTGCAACTTT
AGCTGTCCCTCTCAAAGAATGCGTGAATTGTAAACGTGGGGACATGCGTT
ACTCTTTAGGTGACAGTAAGACTGGAATTGCTCGATATATTGGGTGCGAA
GACAATGATTGTGGAGAAGATAGTTGTACATCTTTTGGTTGCTCTCGATG
TTCGGCACGCAGGGCGTGTTGCGCGAAATCAGACGAAACAAAATGTGCTT
TTCACCTGAACTTTGGTGACGGCAGCGGCGCAAAAGGCGTTCTCGTCTAT
GATGTCATGAGTTGGGGCGATGTGGACTTTCCTGTCTACGCAGGGGGGAT
CATGAGTGACTCGCCTGATTTTGAGCGGTCGCAGGTGGATGGAATTCTTG
GTATGGCGTACCCAAGTCTTGCTTGCAATCCTAGTTGCATCAAACCCACA
TTTGAATCAATGCTGCAGAAATATTCTGATATGAAGGATGTGTTCTCGAT
ATGCATAACGTATGACTCCGGTCGGATCGTCCTTGGTGAATATGATCCTG
CGCTGTCAACAAAGAACATATCTTGGGTCAATCTAGAGCTTTCTGAACCT
CCTACATTCTATTCGTTTCCTTTGATTGGGAATATGCGTGTCAATAGTGA
AGAGCTCGTTTTGCCATCGTACTCCCGGGCTATCGTGGATTCAGGCACTA
CGCTTATAGTGTTTTCGCATAGTACTTTCAATAGGTTCAAGGGATATTTG
CAAGACAACTTTTGCCATGTTCCTGGTTTGTGCAATTCTGACTCGTGGTT
TCGTCCAGCGCACTGCACACAAATCGCCGAGAAAGACCGAATAGCTCTAC
CGACGCTTTCGTTTAGTGTGACAGGTTTTAATATTACTTTAGGACCTTCA
GACTATCTCATTAACTATGCATCGAAAGGAAGCGATTTCTGGTGCGTCGG
GATAATGGCACTGGACTCAATGAGTGGGGGCGTAGATGTCATTTTCGGAA
ATACTGTAATGAAGAAGTATGTGACTGTATATGACCGGCAGCACTCACGA
GTTGGATTTGCCGAATCGGATACGAATTGCGGTCTTACCGCAAAGGATTC
TATACCTGCAGCCATACCAGCTACGAGTCCAGGGGACCCACAAGAGTTAA
ATAAGGGACAGGGAGCGTCACAGAATGCTGAAGAGAAACCTTCAACCGCT
GGAAGTGATGCAGAGGATGAAGATCCGGTGTTTGATATGGGTGAAGGCAA
GGATAACGCCCAGGCGGAGAATGTGGAACAAAAAGGATCTGGTACTGTTA
TCAGCAGCACCCCTTGTTCGGTGGCTCCCAACTGTTCCGCATGTGCGGCC
ATGAAAGGCGAATGCATGTGGGACGGGGCTTCCCAAAAGTGTGTGCAAGG
GCAAAGTTTTGCGCTGATGTGTACTATAGACAACCTTGCTGGTAGGCTGG
TATACGTTATTGGCGGGGCAGTTGTAGCTACGGTGACGCTGGTTGCCGTG
GTTGCCTTCGCAGTTCGCAAGAGAAGTGCTCCATCAGACACTGCAGAAGA
ACATGAGCCACTTGCGCACAGCGAGGATGAAACTCGAGATGCTTTTGCGC
TGGAAGACGATGAAACAGAAGACCAGGCTTAA