Gchil6379.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGchil6379.t1
Unique NameGchil6379.t1
TypemRNA
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length501
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000196_piloncontigtig00000196_pilon:469535..471037 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog68194.JNXR01000036_gene4964
PFAMsBBE,FAD_binding_4
Max annot lvl201174|Actinobacteria
Evalue7.17e-38
EggNOG OGsCOG0277@1|root,COG0277@2|Bacteria,2GK5U@201174|Actinobacteria
DescriptionPFAM FAD linked oxidase domain protein
COG categoryC
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil6379Gchil6379Gracilaria chilensis NLEC103_M9 malegenetig00000196_pilon 469535..471037 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil6379.t1.stop1Gchil6379.t1.stop1Gracilaria chilensis NLEC103_M9 malestop_codontig00000196_pilon 469535..469537 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil6379.t1.CDS1Gchil6379.t1.CDS1Gracilaria chilensis NLEC103_M9 maleCDStig00000196_pilon 469535..471037 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil6379.t1.exon1Gchil6379.t1.exon1Gracilaria chilensis NLEC103_M9 maleexontig00000196_pilon 469535..471037 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil6379.t1.start1Gchil6379.t1.start1Gracilaria chilensis NLEC103_M9 malestart_codontig00000196_pilon 471035..471037 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil6379.t1Gchil6379.t1Gracilaria chilensis NLEC103_M9 malepolypeptidetig00000196_pilon 469535..471037 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gchil6379.t1 ID=Gchil6379.t1|Name=Gchil6379.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=501bp
MTSLLRISAPLLVFFLHLAVAANAIRLKRLESCLGASISLYTPSTQKFSH
LKELSFRSNRASPLAIVTAHNEWHVAKTVRCARKVSIRVCARSGGHSLTG
SSLCNGLVLDLSRMRRVEMQPGNVALIQPGANMGEVVWALHKKRRWMAAG
VCPSVGFAGYVLGGGHSPYEGRLGLACDSMLSFRMVDRFGKVVVANRKKR
SMLFWAMCGAGGGHFGIVTAFRWRTVSSKPFDRAVVFRFKWPAKRGGELL
EKWQRYDEWGGNIWFRMEVYLAKREEGVFGYGACYDVKSVAGCLRRLNHA
PFFKTAGRSTTYISKARNALDVQAFFGPEGSWGERRASNLHKAMLQQREI
EGSAANDRSYQSTFMKMRNGKTPSRQFWQEYVNFCQSVFGRQSIPWVVCE
MNLFNNAIDKVRNNAFAFRGANLITHYIVGGGTAAHKKFAYYWMKRHLAP
FTIGVYVNYAELELGNYAEMYWGDSLATLKRVQKWYDPGYFFMNSQPIPK
*
back to top

spliced messenger RNA

>Gchil6379.t1 ID=Gchil6379.t1|Name=Gchil6379.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1503bp|location=Sequence derived from alignment at tig00000196_pilon:469535..471037- (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGACTTCTCTCCTTCGCATTTCAGCCCCGCTCCTCGTATTCTTCCTCCA
CCTCGCCGTCGCTGCGAACGCCATCCGCCTTAAACGTCTCGAATCATGTC
TTGGGGCCTCTATCTCCCTCTACACCCCATCCACACAGAAATTTAGTCAC
CTGAAAGAGCTCTCATTTCGTTCTAACCGCGCGTCCCCGCTCGCAATTGT
CACAGCGCACAACGAATGGCATGTTGCCAAAACCGTGCGTTGCGCCCGAA
AAGTGTCCATAAGAGTGTGCGCCCGATCCGGCGGCCATTCTCTCACTGGA
AGTAGCCTGTGCAATGGACTCGTCCTGGATTTGTCTCGCATGAGACGCGT
GGAGATGCAGCCAGGGAACGTGGCCTTGATACAACCCGGTGCAAATATGG
GCGAGGTGGTTTGGGCGCTACACAAGAAAAGACGTTGGATGGCGGCTGGA
GTGTGCCCTTCGGTCGGCTTTGCAGGTTATGTGTTGGGTGGTGGGCACAG
TCCTTACGAAGGGCGTTTGGGACTGGCCTGCGATTCGATGCTTTCATTTC
GTATGGTGGATCGGTTTGGAAAGGTGGTTGTGGCGAACAGGAAGAAACGA
TCCATGTTGTTTTGGGCGATGTGCGGTGCTGGTGGAGGACACTTTGGCAT
TGTCACTGCCTTCAGATGGCGCACCGTATCCTCCAAACCGTTTGACCGCG
CGGTGGTTTTCCGCTTTAAATGGCCGGCGAAACGGGGCGGTGAACTGCTT
GAAAAGTGGCAACGGTACGATGAATGGGGAGGTAACATATGGTTCCGCAT
GGAAGTATACTTGGCTAAGAGAGAAGAGGGAGTGTTCGGATATGGCGCCT
GCTATGATGTGAAGTCAGTGGCTGGGTGTCTGAGGCGCTTGAATCATGCG
CCATTTTTCAAGACCGCTGGGAGAAGTACTACCTACATCTCAAAGGCGAG
AAATGCGTTGGATGTTCAGGCGTTCTTCGGGCCGGAGGGATCATGGGGTG
AACGTCGCGCTTCGAATTTGCACAAAGCTATGCTGCAGCAGCGCGAGATA
GAAGGAAGTGCTGCCAATGACCGTAGCTATCAGTCGACATTCATGAAAAT
GCGCAATGGGAAAACTCCATCTCGCCAATTTTGGCAAGAATATGTTAACT
TTTGTCAAAGTGTGTTTGGGAGACAGAGCATTCCATGGGTGGTTTGCGAG
ATGAACTTATTCAATAACGCAATCGACAAGGTACGGAACAACGCATTCGC
CTTCAGAGGGGCCAATCTTATCACGCACTACATCGTGGGAGGTGGAACCG
CTGCTCACAAAAAATTTGCTTACTATTGGATGAAGCGACATCTAGCTCCA
TTCACCATTGGGGTATATGTTAATTACGCCGAGCTCGAACTTGGCAACTA
TGCAGAAATGTATTGGGGTGACAGCCTGGCGACTTTGAAACGTGTACAAA
AATGGTACGACCCAGGATACTTTTTCATGAATTCACAGCCAATTCCCAAG
TGA
back to top

protein sequence of Gchil6379.t1

>Gchil6379.t1 ID=Gchil6379.t1|Name=Gchil6379.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=501bp
MTSLLRISAPLLVFFLHLAVAANAIRLKRLESCLGASISLYTPSTQKFSH
LKELSFRSNRASPLAIVTAHNEWHVAKTVRCARKVSIRVCARSGGHSLTG
SSLCNGLVLDLSRMRRVEMQPGNVALIQPGANMGEVVWALHKKRRWMAAG
VCPSVGFAGYVLGGGHSPYEGRLGLACDSMLSFRMVDRFGKVVVANRKKR
SMLFWAMCGAGGGHFGIVTAFRWRTVSSKPFDRAVVFRFKWPAKRGGELL
EKWQRYDEWGGNIWFRMEVYLAKREEGVFGYGACYDVKSVAGCLRRLNHA
PFFKTAGRSTTYISKARNALDVQAFFGPEGSWGERRASNLHKAMLQQREI
EGSAANDRSYQSTFMKMRNGKTPSRQFWQEYVNFCQSVFGRQSIPWVVCE
MNLFNNAIDKVRNNAFAFRGANLITHYIVGGGTAAHKKFAYYWMKRHLAP
FTIGVYVNYAELELGNYAEMYWGDSLATLKRVQKWYDPGYFFMNSQPIPK
*
back to top

mRNA from alignment at tig00000196_pilon:469535..471037-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gchil6379.t1 ID=Gchil6379.t1|Name=Gchil6379.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1503bp|location=Sequence derived from alignment at tig00000196_pilon:469535..471037- (Gracilaria chilensis NLEC103_M9 male)
ATGACTTCTCTCCTTCGCATTTCAGCCCCGCTCCTCGTATTCTTCCTCCA
CCTCGCCGTCGCTGCGAACGCCATCCGCCTTAAACGTCTCGAATCATGTC
TTGGGGCCTCTATCTCCCTCTACACCCCATCCACACAGAAATTTAGTCAC
CTGAAAGAGCTCTCATTTCGTTCTAACCGCGCGTCCCCGCTCGCAATTGT
CACAGCGCACAACGAATGGCATGTTGCCAAAACCGTGCGTTGCGCCCGAA
AAGTGTCCATAAGAGTGTGCGCCCGATCCGGCGGCCATTCTCTCACTGGA
AGTAGCCTGTGCAATGGACTCGTCCTGGATTTGTCTCGCATGAGACGCGT
GGAGATGCAGCCAGGGAACGTGGCCTTGATACAACCCGGTGCAAATATGG
GCGAGGTGGTTTGGGCGCTACACAAGAAAAGACGTTGGATGGCGGCTGGA
GTGTGCCCTTCGGTCGGCTTTGCAGGTTATGTGTTGGGTGGTGGGCACAG
TCCTTACGAAGGGCGTTTGGGACTGGCCTGCGATTCGATGCTTTCATTTC
GTATGGTGGATCGGTTTGGAAAGGTGGTTGTGGCGAACAGGAAGAAACGA
TCCATGTTGTTTTGGGCGATGTGCGGTGCTGGTGGAGGACACTTTGGCAT
TGTCACTGCCTTCAGATGGCGCACCGTATCCTCCAAACCGTTTGACCGCG
CGGTGGTTTTCCGCTTTAAATGGCCGGCGAAACGGGGCGGTGAACTGCTT
GAAAAGTGGCAACGGTACGATGAATGGGGAGGTAACATATGGTTCCGCAT
GGAAGTATACTTGGCTAAGAGAGAAGAGGGAGTGTTCGGATATGGCGCCT
GCTATGATGTGAAGTCAGTGGCTGGGTGTCTGAGGCGCTTGAATCATGCG
CCATTTTTCAAGACCGCTGGGAGAAGTACTACCTACATCTCAAAGGCGAG
AAATGCGTTGGATGTTCAGGCGTTCTTCGGGCCGGAGGGATCATGGGGTG
AACGTCGCGCTTCGAATTTGCACAAAGCTATGCTGCAGCAGCGCGAGATA
GAAGGAAGTGCTGCCAATGACCGTAGCTATCAGTCGACATTCATGAAAAT
GCGCAATGGGAAAACTCCATCTCGCCAATTTTGGCAAGAATATGTTAACT
TTTGTCAAAGTGTGTTTGGGAGACAGAGCATTCCATGGGTGGTTTGCGAG
ATGAACTTATTCAATAACGCAATCGACAAGGTACGGAACAACGCATTCGC
CTTCAGAGGGGCCAATCTTATCACGCACTACATCGTGGGAGGTGGAACCG
CTGCTCACAAAAAATTTGCTTACTATTGGATGAAGCGACATCTAGCTCCA
TTCACCATTGGGGTATATGTTAATTACGCCGAGCTCGAACTTGGCAACTA
TGCAGAAATGTATTGGGGTGACAGCCTGGCGACTTTGAAACGTGTACAAA
AATGGTACGACCCAGGATACTTTTTCATGAATTCACAGCCAATTCCCAAG
TGA
back to top

Coding sequence (CDS) from alignment at tig00000196_pilon:469535..471037-

>Gchil6379.t1 ID=Gchil6379.t1|Name=Gchil6379.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=1503bp|location=Sequence derived from alignment at tig00000196_pilon:469535..471037- (Gracilaria chilensis NLEC103_M9 male)
ATGACTTCTCTCCTTCGCATTTCAGCCCCGCTCCTCGTATTCTTCCTCCA
CCTCGCCGTCGCTGCGAACGCCATCCGCCTTAAACGTCTCGAATCATGTC
TTGGGGCCTCTATCTCCCTCTACACCCCATCCACACAGAAATTTAGTCAC
CTGAAAGAGCTCTCATTTCGTTCTAACCGCGCGTCCCCGCTCGCAATTGT
CACAGCGCACAACGAATGGCATGTTGCCAAAACCGTGCGTTGCGCCCGAA
AAGTGTCCATAAGAGTGTGCGCCCGATCCGGCGGCCATTCTCTCACTGGA
AGTAGCCTGTGCAATGGACTCGTCCTGGATTTGTCTCGCATGAGACGCGT
GGAGATGCAGCCAGGGAACGTGGCCTTGATACAACCCGGTGCAAATATGG
GCGAGGTGGTTTGGGCGCTACACAAGAAAAGACGTTGGATGGCGGCTGGA
GTGTGCCCTTCGGTCGGCTTTGCAGGTTATGTGTTGGGTGGTGGGCACAG
TCCTTACGAAGGGCGTTTGGGACTGGCCTGCGATTCGATGCTTTCATTTC
GTATGGTGGATCGGTTTGGAAAGGTGGTTGTGGCGAACAGGAAGAAACGA
TCCATGTTGTTTTGGGCGATGTGCGGTGCTGGTGGAGGACACTTTGGCAT
TGTCACTGCCTTCAGATGGCGCACCGTATCCTCCAAACCGTTTGACCGCG
CGGTGGTTTTCCGCTTTAAATGGCCGGCGAAACGGGGCGGTGAACTGCTT
GAAAAGTGGCAACGGTACGATGAATGGGGAGGTAACATATGGTTCCGCAT
GGAAGTATACTTGGCTAAGAGAGAAGAGGGAGTGTTCGGATATGGCGCCT
GCTATGATGTGAAGTCAGTGGCTGGGTGTCTGAGGCGCTTGAATCATGCG
CCATTTTTCAAGACCGCTGGGAGAAGTACTACCTACATCTCAAAGGCGAG
AAATGCGTTGGATGTTCAGGCGTTCTTCGGGCCGGAGGGATCATGGGGTG
AACGTCGCGCTTCGAATTTGCACAAAGCTATGCTGCAGCAGCGCGAGATA
GAAGGAAGTGCTGCCAATGACCGTAGCTATCAGTCGACATTCATGAAAAT
GCGCAATGGGAAAACTCCATCTCGCCAATTTTGGCAAGAATATGTTAACT
TTTGTCAAAGTGTGTTTGGGAGACAGAGCATTCCATGGGTGGTTTGCGAG
ATGAACTTATTCAATAACGCAATCGACAAGGTACGGAACAACGCATTCGC
CTTCAGAGGGGCCAATCTTATCACGCACTACATCGTGGGAGGTGGAACCG
CTGCTCACAAAAAATTTGCTTACTATTGGATGAAGCGACATCTAGCTCCA
TTCACCATTGGGGTATATGTTAATTACGCCGAGCTCGAACTTGGCAACTA
TGCAGAAATGTATTGGGGTGACAGCCTGGCGACTTTGAAACGTGTACAAA
AATGGTACGACCCAGGATACTTTTTCATGAATTCACAGCCAATTCCCAAG
TGA
back to top