Gchil7587.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGchil7587.t1
Unique NameGchil7587.t1
TypemRNA
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length161
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000007_piloncontigtig00000007_pilon:2101576..2102152 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil7587Gchil7587Gracilaria chilensis NLEC103_M9 malegenetig00000007_pilon 2101576..2102152 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil7587.t1Gchil7587.t1Gracilaria chilensis NLEC103_M9 malepolypeptidetig00000007_pilon 2101576..2102152 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil7587.t1.start1Gchil7587.t1.start1Gracilaria chilensis NLEC103_M9 malestart_codontig00000007_pilon 2101576..2101578 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil7587.t1.CDS1Gchil7587.t1.CDS1Gracilaria chilensis NLEC103_M9 maleCDStig00000007_pilon 2101576..2101751 +
Gchil7587.t1.CDS2Gchil7587.t1.CDS2Gracilaria chilensis NLEC103_M9 maleCDStig00000007_pilon 2101846..2102152 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil7587.t1.exon1Gchil7587.t1.exon1Gracilaria chilensis NLEC103_M9 maleexontig00000007_pilon 2101576..2101751 +
Gchil7587.t1.exon2Gchil7587.t1.exon2Gracilaria chilensis NLEC103_M9 maleexontig00000007_pilon 2101846..2102152 +


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil7587.t1.intron1Gchil7587.t1.intron1Gracilaria chilensis NLEC103_M9 maleintrontig00000007_pilon 2101752..2101845 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil7587.t1.stop1Gchil7587.t1.stop1Gracilaria chilensis NLEC103_M9 malestop_codontig00000007_pilon 2102150..2102152 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gchil7587.t1 ID=Gchil7587.t1|Name=Gchil7587.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=161bp
MRGDSEFVKRRRTYRDEMHLLRMRFSGESETEQETARARSDVQATDLTEH
KNERKARKRERSLQRIKEHKERLRQVQEEKKERVAFKKNVWEEKQKKLVE
KGESVVQLLVSEAPHWITDDTLNKHVEQAVDEFFIEGVADARRDEEALRV
NGEVRGAMVA*
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spliced messenger RNA

>Gchil7587.t1 ID=Gchil7587.t1|Name=Gchil7587.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=483bp|location=Sequence derived from alignment at tig00000007_pilon:2101576..2102152+ (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCGCGGGGATTCTGAATTCGTCAAGCGCCGGAGAACATACAGAGATGA
AATGCACCTACTGCGAATGCGATTCTCAGGTGAATCAGAAACAGAACAAG
AAACTGCACGAGCCAGGAGCGATGTTCAAGCAACAGATCTGACTGAACAC
AAGAATGAGCGCAAGGCTCGTAAACGCGAGCGTTCATTACAACGAATAAA
AGAACATAAGGAACGACTAAGACAAGTACAAGAAGAGAAAAAAGAACGAG
TTGCATTCAAGAAGAATGTTTGGGAAGAGAAGCAAAAAAAACTAGTGGAA
AAAGGCGAATCTGTGGTACAATTACTTGTAAGCGAGGCCCCGCACTGGAT
TACTGACGATACTTTGAACAAACACGTTGAACAAGCAGTTGATGAGTTCT
TCATTGAGGGGGTTGCAGACGCCAGACGAGATGAGGAGGCACTGCGTGTG
AACGGTGAAGTGCGTGGCGCTATGGTAGCTTAG
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protein sequence of Gchil7587.t1

>Gchil7587.t1 ID=Gchil7587.t1|Name=Gchil7587.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=161bp
MRGDSEFVKRRRTYRDEMHLLRMRFSGESETEQETARARSDVQATDLTEH
KNERKARKRERSLQRIKEHKERLRQVQEEKKERVAFKKNVWEEKQKKLVE
KGESVVQLLVSEAPHWITDDTLNKHVEQAVDEFFIEGVADARRDEEALRV
NGEVRGAMVA*
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mRNA from alignment at tig00000007_pilon:2101576..2102152+

Legend: polypeptidestart_codonCDSexonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gchil7587.t1 ID=Gchil7587.t1|Name=Gchil7587.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=577bp|location=Sequence derived from alignment at tig00000007_pilon:2101576..2102152+ (Gracilaria chilensis NLEC103_M9 male)
ATGCGCGGGGATTCTGAATTCGTCAAGCGCCGGAGAACATACAGAGATGA
AATGCACCTACTGCGAATGCGATTCTCAGGTGAATCAGAAACAGAACAAG
AAACTGCACGAGCCAGGAGCGATGTTCAAGCAACAGATCTGACTGAACAC
AAGAATGAGCGCAAGGCTCGTAAACGGTAAGATATTTCACCATGTTTGGC
TATAAACAAAAACACAGGTGTGTCGTGGCTACTAACCACGGAATTGGATT
CAATCACGTTTCGATCGCAGCGAGCGTTCATTACAACGAATAAAAGAACA
TAAGGAACGACTAAGACAAGTACAAGAAGAGAAAAAAGAACGAGTTGCAT
TCAAGAAGAATGTTTGGGAAGAGAAGCAAAAAAAACTAGTGGAAAAAGGC
GAATCTGTGGTACAATTACTTGTAAGCGAGGCCCCGCACTGGATTACTGA
CGATACTTTGAACAAACACGTTGAACAAGCAGTTGATGAGTTCTTCATTG
AGGGGGTTGCAGACGCCAGACGAGATGAGGAGGCACTGCGTGTGAACGGT
GAAGTGCGTGGCGCTATGGTAGCTTAG
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Coding sequence (CDS) from alignment at tig00000007_pilon:2101576..2102152+

>Gchil7587.t1 ID=Gchil7587.t1|Name=Gchil7587.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=483bp|location=Sequence derived from alignment at tig00000007_pilon:2101576..2102152+ (Gracilaria chilensis NLEC103_M9 male)
ATGCGCGGGGATTCTGAATTCGTCAAGCGCCGGAGAACATACAGAGATGA
AATGCACCTACTGCGAATGCGATTCTCAGGTGAATCAGAAACAGAACAAG
AAACTGCACGAGCCAGGAGCGATGTTCAAGCAACAGATCTGACTGAACAC
AAGAATGAGCGCAAGGCTCGTAAACGCGAGCGTTCATTACAACGAATAAA
AGAACATAAGGAACGACTAAGACAAGTACAAGAAGAGAAAAAAGAACGAG
TTGCATTCAAGAAGAATGTTTGGGAAGAGAAGCAAAAAAAACTAGTGGAA
AAAGGCGAATCTGTGGTACAATTACTTGTAAGCGAGGCCCCGCACTGGAT
TACTGACGATACTTTGAACAAACACGTTGAACAAGCAGTTGATGAGTTCT
TCATTGAGGGGGTTGCAGACGCCAGACGAGATGAGGAGGCACTGCGTGTG
AACGGTGAAGTGCGTGGCGCTATGGTAGCTTAG
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