Gchil6366.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGchil6366.t1
Unique NameGchil6366.t1
TypemRNA
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length294
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000196_piloncontigtig00000196_pilon:293351..294543 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog325452.fgenesh_scip_prom.46568.10065
PFAMsPCO_ADO
Max annot lvl4776|Peronosporales
KEGG rclassRC00404
KEGG koko:K10712
KEGG ReactionR02467
KEGG Pathwayko00430,ko01100,map00430,map01100
Evalue3.82e-24
EggNOG OGsKOG4281@1|root,KOG4281@2759|Eukaryota,3QAT1@4776|Peronosporales
EC1.13.11.19
DescriptionPCO_ADO
COG categoryS
BRITEko00000,ko00001,ko01000
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil6366Gchil6366Gracilaria chilensis NLEC103_M9 malegenetig00000196_pilon 293351..294543 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil6366.t1Gchil6366.t1Gracilaria chilensis NLEC103_M9 malepolypeptidetig00000196_pilon 293351..294543 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil6366.t1.start1Gchil6366.t1.start1Gracilaria chilensis NLEC103_M9 malestart_codontig00000196_pilon 293351..293353 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil6366.t1.CDS1Gchil6366.t1.CDS1Gracilaria chilensis NLEC103_M9 maleCDStig00000196_pilon 293351..294037 +
Gchil6366.t1.CDS2Gchil6366.t1.CDS2Gracilaria chilensis NLEC103_M9 maleCDStig00000196_pilon 294120..294176 +
Gchil6366.t1.CDS3Gchil6366.t1.CDS3Gracilaria chilensis NLEC103_M9 maleCDStig00000196_pilon 294278..294411 +
Gchil6366.t1.CDS4Gchil6366.t1.CDS4Gracilaria chilensis NLEC103_M9 maleCDStig00000196_pilon 294540..294543 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil6366.t1.exon1Gchil6366.t1.exon1Gracilaria chilensis NLEC103_M9 maleexontig00000196_pilon 293351..294037 +
Gchil6366.t1.exon2Gchil6366.t1.exon2Gracilaria chilensis NLEC103_M9 maleexontig00000196_pilon 294120..294176 +
Gchil6366.t1.exon3Gchil6366.t1.exon3Gracilaria chilensis NLEC103_M9 maleexontig00000196_pilon 294278..294411 +
Gchil6366.t1.exon4Gchil6366.t1.exon4Gracilaria chilensis NLEC103_M9 maleexontig00000196_pilon 294540..294543 +


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil6366.t1.intron1Gchil6366.t1.intron1Gracilaria chilensis NLEC103_M9 maleintrontig00000196_pilon 294038..294119 +
Gchil6366.t1.intron2Gchil6366.t1.intron2Gracilaria chilensis NLEC103_M9 maleintrontig00000196_pilon 294177..294277 +
Gchil6366.t1.intron3Gchil6366.t1.intron3Gracilaria chilensis NLEC103_M9 maleintrontig00000196_pilon 294412..294539 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil6366.t1.stop1Gchil6366.t1.stop1Gracilaria chilensis NLEC103_M9 malestop_codontig00000196_pilon 294541..294543 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gchil6366.t1 ID=Gchil6366.t1|Name=Gchil6366.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=294bp
MGRLRAFISTVFPRFVRSQRNIPRCSLQKVFDVANTAVLHARTTSSGKQI
TLSDVQLSELAQTVAAMNAEDLVIERKRFIDEANDCEDHESVVYVPVAEN
ENCTLAVFVIPPGRSIPLHDHPHMYVVSRVLWGELEVNAYDIHPSDSANL
PNGHLYARETGPQVIPSDQVKSLTPTSNNVHAFSTSEWTAVFDVLLPPYN
AEQRRDCTYYEVLLPGESQQHAKANVILKKTPCPDAFRTVASDYLGVEYA
TRGYSELSWFVFSVLSDRRDDLLLSLQNSGEKTTIEKRHMSHN*
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spliced messenger RNA

>Gchil6366.t1 ID=Gchil6366.t1|Name=Gchil6366.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=882bp|location=Sequence derived from alignment at tig00000196_pilon:293351..294543+ (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGGTCGTCTTCGAGCGTTCATCTCCACAGTCTTTCCGCGATTCGTCCG
TTCACAGAGAAATATTCCTCGTTGCTCGTTGCAGAAAGTATTTGATGTCG
CCAACACCGCCGTGCTGCATGCACGCACCACCTCGTCAGGTAAACAGATT
ACGCTCAGCGACGTACAACTCAGCGAATTAGCACAGACCGTCGCCGCCAT
GAATGCTGAAGATCTGGTTATAGAAAGGAAACGGTTTATCGATGAAGCCA
ACGACTGCGAGGATCATGAATCCGTTGTTTATGTGCCAGTCGCGGAGAAT
GAAAACTGTACATTAGCCGTTTTCGTCATTCCGCCGGGACGAAGTATTCC
TCTGCACGACCATCCACACATGTATGTTGTCTCGCGTGTGTTATGGGGTG
AATTAGAGGTGAACGCATATGACATTCATCCGTCTGACTCTGCCAATCTC
CCCAATGGTCATTTGTACGCGAGGGAAACCGGGCCGCAAGTAATTCCTTC
AGACCAAGTCAAAAGTCTCACTCCCACGTCGAATAACGTTCACGCCTTTT
CTACTTCAGAATGGACTGCCGTGTTTGATGTACTACTTCCACCTTATAAT
GCCGAACAGCGCAGGGATTGTACTTACTATGAAGTTCTTCTTCCAGGGGA
ATCCCAGCAACATGCCAAGGCTAATGTCATTTTGAAGAAGACCCCGTGCC
CTGATGCCTTCAGAACGGTTGCTTCAGACTACTTAGGTGTTGAATACGCT
ACTCGAGGGTACTCAGAGCTGTCGTGGTTTGTATTTTCCGTACTTTCGGA
TAGAAGAGACGATCTCTTACTTTCTCTGCAGAACAGCGGTGAAAAAACCA
CCATAGAAAAACGGCATATGTCTCACAACTGA
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protein sequence of Gchil6366.t1

>Gchil6366.t1 ID=Gchil6366.t1|Name=Gchil6366.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=294bp
MGRLRAFISTVFPRFVRSQRNIPRCSLQKVFDVANTAVLHARTTSSGKQI
TLSDVQLSELAQTVAAMNAEDLVIERKRFIDEANDCEDHESVVYVPVAEN
ENCTLAVFVIPPGRSIPLHDHPHMYVVSRVLWGELEVNAYDIHPSDSANL
PNGHLYARETGPQVIPSDQVKSLTPTSNNVHAFSTSEWTAVFDVLLPPYN
AEQRRDCTYYEVLLPGESQQHAKANVILKKTPCPDAFRTVASDYLGVEYA
TRGYSELSWFVFSVLSDRRDDLLLSLQNSGEKTTIEKRHMSHN*
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mRNA from alignment at tig00000196_pilon:293351..294543+

Legend: polypeptidestart_codonCDSexonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gchil6366.t1 ID=Gchil6366.t1|Name=Gchil6366.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1193bp|location=Sequence derived from alignment at tig00000196_pilon:293351..294543+ (Gracilaria chilensis NLEC103_M9 male)
ATGGGTCGTCTTCGAGCGTTCATCTCCACAGTCTTTCCGCGATTCGTCCG
TTCACAGAGAAATATTCCTCGTTGCTCGTTGCAGAAAGTATTTGATGTCG
CCAACACCGCCGTGCTGCATGCACGCACCACCTCGTCAGGTAAACAGATT
ACGCTCAGCGACGTACAACTCAGCGAATTAGCACAGACCGTCGCCGCCAT
GAATGCTGAAGATCTGGTTATAGAAAGGAAACGGTTTATCGATGAAGCCA
ACGACTGCGAGGATCATGAATCCGTTGTTTATGTGCCAGTCGCGGAGAAT
GAAAACTGTACATTAGCCGTTTTCGTCATTCCGCCGGGACGAAGTATTCC
TCTGCACGACCATCCACACATGTATGTTGTCTCGCGTGTGTTATGGGGTG
AATTAGAGGTGAACGCATATGACATTCATCCGTCTGACTCTGCCAATCTC
CCCAATGGTCATTTGTACGCGAGGGAAACCGGGCCGCAAGTAATTCCTTC
AGACCAAGTCAAAAGTCTCACTCCCACGTCGAATAACGTTCACGCCTTTT
CTACTTCAGAATGGACTGCCGTGTTTGATGTACTACTTCCACCTTATAAT
GCCGAACAGCGCAGGGATTGTACTTACTATGAAGTTCTTCTTCCAGGGGA
ATCCCAGCAACATGCCAAGGCTAATGTCATTTTGAAGGTAAGTTCGGGTC
GCGCTTTCACTTTGAGTTGTCTCACCTACTTACATTTCATCTATTGTGCG
AATGCCGAAAAAATCACAGAAGACCCCGTGCCCTGATGCCTTCAGAACGG
TTGCTTCAGACTACTTAGGTGTTGAAGTTCAAATCAATTAGTCCACCATC
CTGCCAAACGCCTCATCATGATCCACAAAGCCCCATATTTCTCAATTGCA
ACATCATTCCCGAGCACTGTAACATAGTACGCTACTCGAGGGTACTCAGA
GCTGTCGTGGTTTGTATTTTCCGTACTTTCGGATAGAAGAGACGATCTCT
TACTTTCTCTGCAGAACAGCGGTGAAAAAACCACCATAGAAAAACGGCAT
ATGTCTCACAAGTAAGTCTTTGCAAAATACAAACAGCCACCCTTCCTGTG
AATGACTCTCACTGCCAAAAAGCGCGGTGCTATACAATTCAACTTGCGAA
ATAGCGATGATGAAACTCACACTTAATGGATTTTGAAAGCTGA
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Coding sequence (CDS) from alignment at tig00000196_pilon:293351..294543+

>Gchil6366.t1 ID=Gchil6366.t1|Name=Gchil6366.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=882bp|location=Sequence derived from alignment at tig00000196_pilon:293351..294543+ (Gracilaria chilensis NLEC103_M9 male)
ATGGGTCGTCTTCGAGCGTTCATCTCCACAGTCTTTCCGCGATTCGTCCG
TTCACAGAGAAATATTCCTCGTTGCTCGTTGCAGAAAGTATTTGATGTCG
CCAACACCGCCGTGCTGCATGCACGCACCACCTCGTCAGGTAAACAGATT
ACGCTCAGCGACGTACAACTCAGCGAATTAGCACAGACCGTCGCCGCCAT
GAATGCTGAAGATCTGGTTATAGAAAGGAAACGGTTTATCGATGAAGCCA
ACGACTGCGAGGATCATGAATCCGTTGTTTATGTGCCAGTCGCGGAGAAT
GAAAACTGTACATTAGCCGTTTTCGTCATTCCGCCGGGACGAAGTATTCC
TCTGCACGACCATCCACACATGTATGTTGTCTCGCGTGTGTTATGGGGTG
AATTAGAGGTGAACGCATATGACATTCATCCGTCTGACTCTGCCAATCTC
CCCAATGGTCATTTGTACGCGAGGGAAACCGGGCCGCAAGTAATTCCTTC
AGACCAAGTCAAAAGTCTCACTCCCACGTCGAATAACGTTCACGCCTTTT
CTACTTCAGAATGGACTGCCGTGTTTGATGTACTACTTCCACCTTATAAT
GCCGAACAGCGCAGGGATTGTACTTACTATGAAGTTCTTCTTCCAGGGGA
ATCCCAGCAACATGCCAAGGCTAATGTCATTTTGAAGAAGACCCCGTGCC
CTGATGCCTTCAGAACGGTTGCTTCAGACTACTTAGGTGTTGAATACGCT
ACTCGAGGGTACTCAGAGCTGTCGTGGTTTGTATTTTCCGTACTTTCGGA
TAGAAGAGACGATCTCTTACTTTCTCTGCAGAACAGCGGTGAAAAAACCA
CCATAGAAAAACGGCATATGTCTCACAACTGA
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