Gchil6364.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGchil6364.t1
Unique NameGchil6364.t1
TypemRNA
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length292
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000196_piloncontigtig00000196_pilon:287365..288240 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog224324.aq_1935
Preferred namerplA
PFAMsRibosomal_L1
Max annot lvl200783|Aquificae
KEGG koko:K02863
KEGG Pathwayko03010,map03010
KEGG ModuleM00178,M00179
GOsGO:0000470,GO:0003674,GO:0003676,GO:0003723,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005840,GO:0006139,GO:0006364,GO:0006396,GO:0006412,GO:0006518,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0010467,GO:0015934,GO:0016070,GO:0016072,GO:0019538,GO:0022613,GO:0022625,GO:0022626,GO:0032991,GO:0034470,GO:0034641,GO:0034645,GO:0034660,GO:0042254,GO:0042273,GO:0043043,GO:0043170,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0043603,GO:0043604,GO:0044085,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044391,GO:0044422,GO:0044424,GO:0044444,GO:0044445,GO:0044446,GO:0044464,GO:0046483,GO:0071704,GO:0071840,GO:0090304,GO:0097159,GO:1901360,GO:1901363,GO:1901564,GO:1901566,GO:1901576,GO:1990904
Evalue2.85e-62
EggNOG OGsCOG0081@1|root,COG0081@2|Bacteria,2G3UI@200783|Aquificae
DescriptionBinds directly to 23S rRNA. The L1 stalk is quite mobile in the ribosome, and is involved in E site tRNA release
COG categoryJ
BRITEbr01610,ko00000,ko00001,ko00002,ko03011
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil6364Gchil6364Gracilaria chilensis NLEC103_M9 malegenetig00000196_pilon 287365..288240 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil6364.t1.stop1Gchil6364.t1.stop1Gracilaria chilensis NLEC103_M9 malestop_codontig00000196_pilon 287365..287367 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil6364.t1.CDS1Gchil6364.t1.CDS1Gracilaria chilensis NLEC103_M9 maleCDStig00000196_pilon 287365..288240 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil6364.t1.exon1Gchil6364.t1.exon1Gracilaria chilensis NLEC103_M9 maleexontig00000196_pilon 287365..288240 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil6364.t1.start1Gchil6364.t1.start1Gracilaria chilensis NLEC103_M9 malestart_codontig00000196_pilon 288238..288240 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil6364.t1Gchil6364.t1Gracilaria chilensis NLEC103_M9 malepolypeptidetig00000196_pilon 287365..288240 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gchil6364.t1 ID=Gchil6364.t1|Name=Gchil6364.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=292bp
MLASVRYLLGRTLPPVRVPYHLNYATLRSVPRPEGDTERPLSRWRRLKRE
RRAAPTPANRTKQPYDRSAEYDLSTALSHVRASQWAKFDESLELVLRLNI
DPRHADHNLRGVIRLPHGTGRNEKVAVIAEDDVAERAIAAGADLVGADEL
IDKIANEKGKTLKGFAACISVPHLFDKVAAKLGRILGPKGLLPSPKTNTV
TDNVEKILEEIKRGRLCYRTDKAGNMHLHVGKMSFPDDALVENTVEAVRG
ILAVKPPSLKGKYLLNAIVCSSMGPSVKLDRQKLMQRVVEV*
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spliced messenger RNA

>Gchil6364.t1 ID=Gchil6364.t1|Name=Gchil6364.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=876bp|location=Sequence derived from alignment at tig00000196_pilon:287365..288240- (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCTTGCGTCCGTGCGCTATTTGTTAGGGCGTACATTGCCACCGGTCCG
TGTTCCATACCATCTGAATTATGCGACGTTGAGAAGTGTTCCCCGCCCAG
AGGGAGACACAGAGCGCCCTCTCAGTCGATGGAGGCGACTTAAACGTGAA
AGACGTGCTGCTCCGACCCCCGCAAATCGCACAAAACAGCCCTACGATCG
CAGCGCAGAGTACGACCTGTCCACCGCCCTGAGTCATGTTCGAGCATCTC
AATGGGCAAAATTCGATGAATCCTTGGAGCTTGTGTTGCGACTCAACATT
GATCCGCGACATGCCGATCATAATTTGCGTGGTGTTATCCGATTGCCGCA
TGGAACTGGCAGAAATGAAAAAGTAGCTGTCATCGCCGAAGATGACGTCG
CTGAACGCGCGATTGCAGCAGGTGCGGACCTGGTTGGCGCGGACGAGCTC
ATCGATAAGATTGCAAACGAAAAGGGTAAAACGTTGAAGGGATTCGCCGC
TTGCATCTCAGTACCTCATCTGTTCGATAAGGTTGCTGCAAAACTTGGAA
GGATACTTGGGCCAAAAGGTCTTTTGCCTAGCCCAAAGACGAACACTGTA
ACTGATAATGTCGAGAAAATCCTCGAAGAAATTAAGAGGGGTCGCTTGTG
TTATCGAACCGATAAAGCAGGCAACATGCATCTTCATGTTGGAAAAATGA
GCTTCCCTGATGACGCTTTAGTGGAAAACACTGTGGAAGCAGTCAGGGGT
ATTCTTGCTGTGAAACCTCCATCGCTGAAGGGAAAGTATCTCCTGAACGC
AATCGTTTGTTCAAGCATGGGGCCATCCGTCAAATTAGATCGGCAAAAGC
TGATGCAGCGGGTAGTAGAGGTGTAG
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protein sequence of Gchil6364.t1

>Gchil6364.t1 ID=Gchil6364.t1|Name=Gchil6364.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=292bp
MLASVRYLLGRTLPPVRVPYHLNYATLRSVPRPEGDTERPLSRWRRLKRE
RRAAPTPANRTKQPYDRSAEYDLSTALSHVRASQWAKFDESLELVLRLNI
DPRHADHNLRGVIRLPHGTGRNEKVAVIAEDDVAERAIAAGADLVGADEL
IDKIANEKGKTLKGFAACISVPHLFDKVAAKLGRILGPKGLLPSPKTNTV
TDNVEKILEEIKRGRLCYRTDKAGNMHLHVGKMSFPDDALVENTVEAVRG
ILAVKPPSLKGKYLLNAIVCSSMGPSVKLDRQKLMQRVVEV*
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mRNA from alignment at tig00000196_pilon:287365..288240-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gchil6364.t1 ID=Gchil6364.t1|Name=Gchil6364.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=876bp|location=Sequence derived from alignment at tig00000196_pilon:287365..288240- (Gracilaria chilensis NLEC103_M9 male)
ATGCTTGCGTCCGTGCGCTATTTGTTAGGGCGTACATTGCCACCGGTCCG
TGTTCCATACCATCTGAATTATGCGACGTTGAGAAGTGTTCCCCGCCCAG
AGGGAGACACAGAGCGCCCTCTCAGTCGATGGAGGCGACTTAAACGTGAA
AGACGTGCTGCTCCGACCCCCGCAAATCGCACAAAACAGCCCTACGATCG
CAGCGCAGAGTACGACCTGTCCACCGCCCTGAGTCATGTTCGAGCATCTC
AATGGGCAAAATTCGATGAATCCTTGGAGCTTGTGTTGCGACTCAACATT
GATCCGCGACATGCCGATCATAATTTGCGTGGTGTTATCCGATTGCCGCA
TGGAACTGGCAGAAATGAAAAAGTAGCTGTCATCGCCGAAGATGACGTCG
CTGAACGCGCGATTGCAGCAGGTGCGGACCTGGTTGGCGCGGACGAGCTC
ATCGATAAGATTGCAAACGAAAAGGGTAAAACGTTGAAGGGATTCGCCGC
TTGCATCTCAGTACCTCATCTGTTCGATAAGGTTGCTGCAAAACTTGGAA
GGATACTTGGGCCAAAAGGTCTTTTGCCTAGCCCAAAGACGAACACTGTA
ACTGATAATGTCGAGAAAATCCTCGAAGAAATTAAGAGGGGTCGCTTGTG
TTATCGAACCGATAAAGCAGGCAACATGCATCTTCATGTTGGAAAAATGA
GCTTCCCTGATGACGCTTTAGTGGAAAACACTGTGGAAGCAGTCAGGGGT
ATTCTTGCTGTGAAACCTCCATCGCTGAAGGGAAAGTATCTCCTGAACGC
AATCGTTTGTTCAAGCATGGGGCCATCCGTCAAATTAGATCGGCAAAAGC
TGATGCAGCGGGTAGTAGAGGTGTAG
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Coding sequence (CDS) from alignment at tig00000196_pilon:287365..288240-

>Gchil6364.t1 ID=Gchil6364.t1|Name=Gchil6364.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=876bp|location=Sequence derived from alignment at tig00000196_pilon:287365..288240- (Gracilaria chilensis NLEC103_M9 male)
ATGCTTGCGTCCGTGCGCTATTTGTTAGGGCGTACATTGCCACCGGTCCG
TGTTCCATACCATCTGAATTATGCGACGTTGAGAAGTGTTCCCCGCCCAG
AGGGAGACACAGAGCGCCCTCTCAGTCGATGGAGGCGACTTAAACGTGAA
AGACGTGCTGCTCCGACCCCCGCAAATCGCACAAAACAGCCCTACGATCG
CAGCGCAGAGTACGACCTGTCCACCGCCCTGAGTCATGTTCGAGCATCTC
AATGGGCAAAATTCGATGAATCCTTGGAGCTTGTGTTGCGACTCAACATT
GATCCGCGACATGCCGATCATAATTTGCGTGGTGTTATCCGATTGCCGCA
TGGAACTGGCAGAAATGAAAAAGTAGCTGTCATCGCCGAAGATGACGTCG
CTGAACGCGCGATTGCAGCAGGTGCGGACCTGGTTGGCGCGGACGAGCTC
ATCGATAAGATTGCAAACGAAAAGGGTAAAACGTTGAAGGGATTCGCCGC
TTGCATCTCAGTACCTCATCTGTTCGATAAGGTTGCTGCAAAACTTGGAA
GGATACTTGGGCCAAAAGGTCTTTTGCCTAGCCCAAAGACGAACACTGTA
ACTGATAATGTCGAGAAAATCCTCGAAGAAATTAAGAGGGGTCGCTTGTG
TTATCGAACCGATAAAGCAGGCAACATGCATCTTCATGTTGGAAAAATGA
GCTTCCCTGATGACGCTTTAGTGGAAAACACTGTGGAAGCAGTCAGGGGT
ATTCTTGCTGTGAAACCTCCATCGCTGAAGGGAAAGTATCTCCTGAACGC
AATCGTTTGTTCAAGCATGGGGCCATCCGTCAAATTAGATCGGCAAAAGC
TGATGCAGCGGGTAGTAGAGGTGTAG
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