Gchil6402.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGchil6402.t1
Unique NameGchil6402.t1
TypemRNA
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length172
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000196_piloncontigtig00000196_pilon:679201..679780 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog40483.S8EJG5
Preferred nameSNQ2
PFAMsABC2_membrane,ABC_tran,ABC_trans_N,PDR_CDR
Max annot lvl4751|Fungi
KEGG koko:K08712
KEGG TC3.A.1.205
KEGG Pathwayko02010,map02010
GOsGO:0003674,GO:0003824,GO:0005215,GO:0005342,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005739,GO:0005829,GO:0005886,GO:0006810,GO:0006855,GO:0006873,GO:0008150,GO:0008559,GO:0009987,GO:0015238,GO:0015399,GO:0015405,GO:0015849,GO:0015893,GO:0016020,GO:0016021,GO:0016462,GO:0016787,GO:0016817,GO:0016818,GO:0016887,GO:0017111,GO:0019725,GO:0022804,GO:0022857,GO:0030003,GO:0031224,GO:0042221,GO:0042493,GO:0042592,GO:0042623,GO:0042626,GO:0042908,GO:0042910,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043492,GO:0044424,GO:0044425,GO:0044444,GO:0044464,GO:0048878,GO:0050801,GO:0050896,GO:0051179,GO:0051234,GO:0055080,GO:0055082,GO:0055085,GO:0055088,GO:0055092,GO:0065007,GO:0065008,GO:0071702,GO:0071944,GO:1903825
Evalue7.16e-23
EggNOG OGsCOG1131@1|root,KOG0065@2759|Eukaryota,38F6P@33154|Opisthokonta,3NTZE@4751|Fungi,3UZ2C@5204|Basidiomycota,225G9@155619|Agaricomycetes,3H347@355688|Agaricomycetes incertae sedis
DescriptionBelongs to the ABC transporter superfamily. ABCG family. PDR (TC 3.A.1.205) subfamily
COG categoryQ
BRITEko00000,ko00001,ko02000
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil6402Gchil6402Gracilaria chilensis NLEC103_M9 malegenetig00000196_pilon 679201..679780 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil6402.t1Gchil6402.t1Gracilaria chilensis NLEC103_M9 malepolypeptidetig00000196_pilon 679201..679780 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil6402.t1.stop1Gchil6402.t1.stop1Gracilaria chilensis NLEC103_M9 malestop_codontig00000196_pilon 679201..679203 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil6402.t1.CDS1Gchil6402.t1.CDS1Gracilaria chilensis NLEC103_M9 maleCDStig00000196_pilon 679201..679663 -
Gchil6402.t1.CDS2Gchil6402.t1.CDS2Gracilaria chilensis NLEC103_M9 maleCDStig00000196_pilon 679728..679780 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil6402.t1.exon1Gchil6402.t1.exon1Gracilaria chilensis NLEC103_M9 maleexontig00000196_pilon 679201..679663 -
Gchil6402.t1.exon2Gchil6402.t1.exon2Gracilaria chilensis NLEC103_M9 maleexontig00000196_pilon 679728..679780 -


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil6402.t1.intron1Gchil6402.t1.intron1Gracilaria chilensis NLEC103_M9 maleintrontig00000196_pilon 679664..679727 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil6402.t1.start1Gchil6402.t1.start1Gracilaria chilensis NLEC103_M9 malestart_codontig00000196_pilon 679778..679780 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gchil6402.t1 ID=Gchil6402.t1|Name=Gchil6402.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=172bp
MDAPCRSSTIERCDNYCAGGEKKRTTIAEMLAVINAGVVFMDNWLKGLDS
STTLSITKSLREFSDMGGAPITTLMEAPGTDVYNVFDTICVLDQGHVIYF
GPRAEAEHYSTGLGFKRPPQRSVPDFLTTVANPAMSDEYLSSYIDLSGLE
QLPPRTSEEARGGRICGVIHT*
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spliced messenger RNA

>Gchil6402.t1 ID=Gchil6402.t1|Name=Gchil6402.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=516bp|location=Sequence derived from alignment at tig00000196_pilon:679201..679780- (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGATGCCCCATGTCGAAGCTCTACGATAGAACGATGTGATAATTATTG
CGCCGGTGGGGAGAAGAAGCGTACCACAATTGCTGAAATGCTTGCTGTAA
TAAATGCTGGCGTAGTGTTTATGGACAATTGGTTAAAGGGGCTTGATAGT
TCCACCACGCTAAGTATTACAAAGTCTTTACGCGAGTTTTCGGATATGGG
TGGAGCCCCTATCACAACTTTGATGGAAGCCCCAGGCACCGACGTATATA
ATGTTTTTGACACCATATGCGTCCTAGATCAAGGTCATGTTATCTACTTC
GGACCTCGAGCGGAAGCGGAACACTACTCTACGGGACTCGGATTTAAACG
TCCACCCCAACGCTCTGTCCCGGATTTTTTGACGACTGTTGCTAATCCTG
CAATGAGTGATGAATACCTCTCATCATATATCGACCTTTCCGGTCTCGAG
CAACTTCCGCCACGCACTTCCGAAGAAGCGCGTGGCGGTAGAATTTGTGG
AGTGATTCACACATAG
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protein sequence of Gchil6402.t1

>Gchil6402.t1 ID=Gchil6402.t1|Name=Gchil6402.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=172bp
MDAPCRSSTIERCDNYCAGGEKKRTTIAEMLAVINAGVVFMDNWLKGLDS
STTLSITKSLREFSDMGGAPITTLMEAPGTDVYNVFDTICVLDQGHVIYF
GPRAEAEHYSTGLGFKRPPQRSVPDFLTTVANPAMSDEYLSSYIDLSGLE
QLPPRTSEEARGGRICGVIHT*
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mRNA from alignment at tig00000196_pilon:679201..679780-

Legend: polypeptideCDSexonstart_codonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gchil6402.t1 ID=Gchil6402.t1|Name=Gchil6402.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=580bp|location=Sequence derived from alignment at tig00000196_pilon:679201..679780- (Gracilaria chilensis NLEC103_M9 male)
ATGGATGCCCCATGTCGAAGCTCTACGATAGAACGATGTGATAATTATTG
CGCGTACGCTGCGCATTGAACGTGTGTTGGATCCTATCATCGGCAATGTT
TTCCTTCGTGGTATTAGCGGTGGGGAGAAGAAGCGTACCACAATTGCTGA
AATGCTTGCTGTAATAAATGCTGGCGTAGTGTTTATGGACAATTGGTTAA
AGGGGCTTGATAGTTCCACCACGCTAAGTATTACAAAGTCTTTACGCGAG
TTTTCGGATATGGGTGGAGCCCCTATCACAACTTTGATGGAAGCCCCAGG
CACCGACGTATATAATGTTTTTGACACCATATGCGTCCTAGATCAAGGTC
ATGTTATCTACTTCGGACCTCGAGCGGAAGCGGAACACTACTCTACGGGA
CTCGGATTTAAACGTCCACCCCAACGCTCTGTCCCGGATTTTTTGACGAC
TGTTGCTAATCCTGCAATGAGTGATGAATACCTCTCATCATATATCGACC
TTTCCGGTCTCGAGCAACTTCCGCCACGCACTTCCGAAGAAGCGCGTGGC
GGTAGAATTTGTGGAGTGATTCACACATAG
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Coding sequence (CDS) from alignment at tig00000196_pilon:679201..679780-

>Gchil6402.t1 ID=Gchil6402.t1|Name=Gchil6402.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=516bp|location=Sequence derived from alignment at tig00000196_pilon:679201..679780- (Gracilaria chilensis NLEC103_M9 male)
ATGGATGCCCCATGTCGAAGCTCTACGATAGAACGATGTGATAATTATTG
CGCCGGTGGGGAGAAGAAGCGTACCACAATTGCTGAAATGCTTGCTGTAA
TAAATGCTGGCGTAGTGTTTATGGACAATTGGTTAAAGGGGCTTGATAGT
TCCACCACGCTAAGTATTACAAAGTCTTTACGCGAGTTTTCGGATATGGG
TGGAGCCCCTATCACAACTTTGATGGAAGCCCCAGGCACCGACGTATATA
ATGTTTTTGACACCATATGCGTCCTAGATCAAGGTCATGTTATCTACTTC
GGACCTCGAGCGGAAGCGGAACACTACTCTACGGGACTCGGATTTAAACG
TCCACCCCAACGCTCTGTCCCGGATTTTTTGACGACTGTTGCTAATCCTG
CAATGAGTGATGAATACCTCTCATCATATATCGACCTTTCCGGTCTCGAG
CAACTTCCGCCACGCACTTCCGAAGAAGCGCGTGGCGGTAGAATTTGTGG
AGTGATTCACACATAG
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