Gchil6356.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gchil6356.t1
Unique Name	Gchil6356.t1
Type	mRNA
Organism	Gracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length	306

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
tig00000196_pilon	contig	tig00000196_pilon:244895..245812 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria chilensis NLEC103_M9 male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	45157.CMT494CT
PFAMs	TraB
Max annot lvl	2759\|Eukaryota
Evalue	8.11e-21
EggNOG OGs	COG1916@1\|root,KOG2860@2759\|Eukaryota
Description	TraB family
COG category	KLT

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gchil6356	Gchil6356	Gracilaria chilensis NLEC103_M9 male	gene	tig00000196_pilon 244895..245812 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil6356.t1.start1	Gchil6356.t1.start1	Gracilaria chilensis NLEC103_M9 male	start_codon	tig00000196_pilon 244895..244897 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil6356.t1.CDS1	Gchil6356.t1.CDS1	Gracilaria chilensis NLEC103_M9 male	CDS	tig00000196_pilon 244895..245812 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil6356.t1.exon1	Gchil6356.t1.exon1	Gracilaria chilensis NLEC103_M9 male	exon	tig00000196_pilon 244895..245812 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil6356.t1.stop1	Gchil6356.t1.stop1	Gracilaria chilensis NLEC103_M9 male	stop_codon	tig00000196_pilon 245810..245812 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil6356.t1	Gchil6356.t1	Gracilaria chilensis NLEC103_M9 male	polypeptide	tig00000196_pilon 244895..245812 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at tig00000196_pilon:244895..245812+
coding sequence from alignment at tig00000196_pilon:244895..245812+

mRNA sequence

>Gchil6356.t1 ID=Gchil6356.t1|Name=Gchil6356.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=306bp
MLVLTRPNVMNQIRILKRIPTARCKHTYSSRSTAVLESKYGTVHLLGTMH
IAEASAEATRDLITREYRKGSLGAVFLELDQERFVRLKRATSLPDESLLS
HALKILSSHKSPIAGLMELGIGSIYRALHRLGFASGVDFKAAIETAEDLN
VPIILGDQEVRTTMRRLGEGFRTDFDLQRMMAILMARSNSQSPESPIERK
LGEAFQAMASGEVTTGQAKLAELIDRNTVHQLIEPMRMFAPNVARAMLYE
RDVIMTENLIKAVKDLGKEKNVIVGVVGLAHIEGIVDEWDSQTEDLSHPS
GNGKE*

spliced messenger RNA

>Gchil6356.t1 ID=Gchil6356.t1|Name=Gchil6356.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=918bp|location=Sequence derived from alignment at tig00000196_pilon:244895..245812+ (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGTTGGTCCTGACTCGCCCGAACGTAATGAATCAAATAAGGATCCTGAA
AAGGATTCCCACCGCCCGTTGCAAACACACCTATTCATCTCGCAGCACCG
CCGTTCTTGAGTCGAAGTACGGAACAGTTCATCTGCTAGGTACAATGCAT
ATCGCGGAGGCATCCGCAGAAGCAACACGTGATCTTATCACCCGCGAATA
TCGGAAGGGATCTTTAGGTGCCGTATTTCTGGAACTTGACCAAGAGCGTT
TTGTCCGGCTTAAGAGAGCAACATCTTTACCAGACGAATCGCTTCTATCT
CATGCTCTTAAGATACTTTCCAGTCACAAAAGCCCCATCGCAGGGCTCAT
GGAGCTCGGGATTGGCAGTATATACCGTGCCTTGCATCGATTGGGCTTCG
CGAGCGGCGTGGACTTCAAGGCCGCCATCGAAACTGCTGAAGATTTGAAC
GTGCCAATCATCCTTGGCGATCAAGAGGTGCGAACAACCATGCGCCGCCT
TGGGGAAGGATTTCGAACAGACTTCGATTTACAGCGTATGATGGCCATCC
TCATGGCTCGTTCAAACTCGCAAAGCCCAGAATCTCCGATAGAACGTAAA
CTGGGTGAAGCATTCCAAGCAATGGCCTCAGGAGAGGTTACAACAGGGCA
AGCAAAACTGGCAGAACTCATCGATCGCAACACTGTTCACCAGCTAATAG
AACCAATGCGTATGTTCGCCCCGAATGTAGCCCGTGCAATGTTGTACGAA
CGCGATGTCATAATGACTGAGAACTTGATCAAAGCGGTCAAAGACTTAGG
AAAGGAGAAAAACGTTATCGTCGGAGTTGTGGGCCTTGCTCATATTGAAG
GTATCGTAGACGAGTGGGATTCCCAGACGGAAGACTTGTCGCATCCGTCT
GGGAATGGCAAGGAGTGA

protein sequence of Gchil6356.t1

>Gchil6356.t1 ID=Gchil6356.t1|Name=Gchil6356.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=306bp
MLVLTRPNVMNQIRILKRIPTARCKHTYSSRSTAVLESKYGTVHLLGTMH
IAEASAEATRDLITREYRKGSLGAVFLELDQERFVRLKRATSLPDESLLS
HALKILSSHKSPIAGLMELGIGSIYRALHRLGFASGVDFKAAIETAEDLN
VPIILGDQEVRTTMRRLGEGFRTDFDLQRMMAILMARSNSQSPESPIERK
LGEAFQAMASGEVTTGQAKLAELIDRNTVHQLIEPMRMFAPNVARAMLYE
RDVIMTENLIKAVKDLGKEKNVIVGVVGLAHIEGIVDEWDSQTEDLSHPS
GNGKE*

mRNA from alignment at tig00000196_pilon:244895..245812+

Legend: start_codonpolypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gchil6356.t1 ID=Gchil6356.t1|Name=Gchil6356.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=918bp|location=Sequence derived from alignment at tig00000196_pilon:244895..245812+ (Gracilaria chilensis NLEC103_M9 male)
ATGTTGGTCCTGACTCGCCCGAACGTAATGAATCAAATAAGGATCCTGAA
AAGGATTCCCACCGCCCGTTGCAAACACACCTATTCATCTCGCAGCACCG
CCGTTCTTGAGTCGAAGTACGGAACAGTTCATCTGCTAGGTACAATGCAT
ATCGCGGAGGCATCCGCAGAAGCAACACGTGATCTTATCACCCGCGAATA
TCGGAAGGGATCTTTAGGTGCCGTATTTCTGGAACTTGACCAAGAGCGTT
TTGTCCGGCTTAAGAGAGCAACATCTTTACCAGACGAATCGCTTCTATCT
CATGCTCTTAAGATACTTTCCAGTCACAAAAGCCCCATCGCAGGGCTCAT
GGAGCTCGGGATTGGCAGTATATACCGTGCCTTGCATCGATTGGGCTTCG
CGAGCGGCGTGGACTTCAAGGCCGCCATCGAAACTGCTGAAGATTTGAAC
GTGCCAATCATCCTTGGCGATCAAGAGGTGCGAACAACCATGCGCCGCCT
TGGGGAAGGATTTCGAACAGACTTCGATTTACAGCGTATGATGGCCATCC
TCATGGCTCGTTCAAACTCGCAAAGCCCAGAATCTCCGATAGAACGTAAA
CTGGGTGAAGCATTCCAAGCAATGGCCTCAGGAGAGGTTACAACAGGGCA
AGCAAAACTGGCAGAACTCATCGATCGCAACACTGTTCACCAGCTAATAG
AACCAATGCGTATGTTCGCCCCGAATGTAGCCCGTGCAATGTTGTACGAA
CGCGATGTCATAATGACTGAGAACTTGATCAAAGCGGTCAAAGACTTAGG
AAAGGAGAAAAACGTTATCGTCGGAGTTGTGGGCCTTGCTCATATTGAAG
GTATCGTAGACGAGTGGGATTCCCAGACGGAAGACTTGTCGCATCCGTCT
GGGAATGGCAAGGAGTGA

Coding sequence (CDS) from alignment at tig00000196_pilon:244895..245812+

>Gchil6356.t1 ID=Gchil6356.t1|Name=Gchil6356.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=918bp|location=Sequence derived from alignment at tig00000196_pilon:244895..245812+ (Gracilaria chilensis NLEC103_M9 male)
ATGTTGGTCCTGACTCGCCCGAACGTAATGAATCAAATAAGGATCCTGAA
AAGGATTCCCACCGCCCGTTGCAAACACACCTATTCATCTCGCAGCACCG
CCGTTCTTGAGTCGAAGTACGGAACAGTTCATCTGCTAGGTACAATGCAT
ATCGCGGAGGCATCCGCAGAAGCAACACGTGATCTTATCACCCGCGAATA
TCGGAAGGGATCTTTAGGTGCCGTATTTCTGGAACTTGACCAAGAGCGTT
TTGTCCGGCTTAAGAGAGCAACATCTTTACCAGACGAATCGCTTCTATCT
CATGCTCTTAAGATACTTTCCAGTCACAAAAGCCCCATCGCAGGGCTCAT
GGAGCTCGGGATTGGCAGTATATACCGTGCCTTGCATCGATTGGGCTTCG
CGAGCGGCGTGGACTTCAAGGCCGCCATCGAAACTGCTGAAGATTTGAAC
GTGCCAATCATCCTTGGCGATCAAGAGGTGCGAACAACCATGCGCCGCCT
TGGGGAAGGATTTCGAACAGACTTCGATTTACAGCGTATGATGGCCATCC
TCATGGCTCGTTCAAACTCGCAAAGCCCAGAATCTCCGATAGAACGTAAA
CTGGGTGAAGCATTCCAAGCAATGGCCTCAGGAGAGGTTACAACAGGGCA
AGCAAAACTGGCAGAACTCATCGATCGCAACACTGTTCACCAGCTAATAG
AACCAATGCGTATGTTCGCCCCGAATGTAGCCCGTGCAATGTTGTACGAA
CGCGATGTCATAATGACTGAGAACTTGATCAAAGCGGTCAAAGACTTAGG
AAAGGAGAAAAACGTTATCGTCGGAGTTGTGGGCCTTGCTCATATTGAAG
GTATCGTAGACGAGTGGGATTCCCAGACGGAAGACTTGTCGCATCCGTCT
GGGAATGGCAAGGAGTGA