Gchil6404.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGchil6404.t1
Unique NameGchil6404.t1
TypemRNA
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length605
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000196_piloncontigtig00000196_pilon:702028..703842 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog983917.RGE_19020
Preferred namepepV
PFAMsM20_dimer,Peptidase_M20
Max annot lvl28216|Betaproteobacteria
KEGG rclassRC00064,RC00090
KEGG koko:K01439
KEGG ReactionR02734
KEGG Pathwayko00300,ko01100,ko01120,ko01230,map00300,map01100,map01120,map01230
KEGG ModuleM00016
Evalue2.63e-134
EggNOG OGsCOG0624@1|root,COG0624@2|Bacteria,1R44A@1224|Proteobacteria,2VMBU@28216|Betaproteobacteria
EC3.5.1.18
DescriptionDipeptidase
COG categoryE
BRITEko00000,ko00001,ko00002,ko01000
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil6404Gchil6404Gracilaria chilensis NLEC103_M9 malegenetig00000196_pilon 702028..703842 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil6404.t1.stop1Gchil6404.t1.stop1Gracilaria chilensis NLEC103_M9 malestop_codontig00000196_pilon 702028..702030 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil6404.t1.CDS1Gchil6404.t1.CDS1Gracilaria chilensis NLEC103_M9 maleCDStig00000196_pilon 702028..703842 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil6404.t1.exon1Gchil6404.t1.exon1Gracilaria chilensis NLEC103_M9 maleexontig00000196_pilon 702028..703842 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil6404.t1.start1Gchil6404.t1.start1Gracilaria chilensis NLEC103_M9 malestart_codontig00000196_pilon 703840..703842 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil6404.t1Gchil6404.t1Gracilaria chilensis NLEC103_M9 malepolypeptidetig00000196_pilon 702028..703842 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gchil6404.t1 ID=Gchil6404.t1|Name=Gchil6404.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=605bp
MDNQILSNLWTNWANETTDLCKIKAYRDADLSDEQVHAGLSQCRKYIFRI
AENFNQTVMQKHQLVSFQWCGDGTNGTHNPTEEEIASSPFWVFGFRIGSD
SAENKVSIVCHLDTVPASDGDGWTPFTPTQEERDYPGGTTSPQQFLVGRG
CIDDKGPAMSAFIMFRALAQTYDKAEPDLFETTQLEIIFDTSEEWDMSTP
RYMLDPGTKLPSFGVVYDAWWIVRAEKGCERPVFFVGPMDESPEVPLYAS
AMYTSSNNSCNTIPDWAKVEVTGHPAALATFKETVPDVFKNFTFDDPNYY
RGVLEVDSQSDSNGTLTKVILTVNVEGAQHGSAPDQNRLNGVNPFVSLSN
FVAGLSDAGTLGVNAVSSMAKFIQWTWGTFAFGENHESLYKHDSIFSEGN
GTTYGVTKSTMQEDGSLKLEIDIRYALPHHALEWDGETEGELDGNSKFSA
IFTTLADRFNGTHPTLGSVSVKPKTIFGPDIRVPDSNENYLKAEEAFRKV
MMMNPPRLAIGGGTDAKGNLALLAMGPLFDTDMGMPISYHGISEGAPMTD
MQVSTQIIYNLFESELKDPSSVKMNKLMRQKKEANMVAALKKNVSRARKH
CCFR*
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spliced messenger RNA

>Gchil6404.t1 ID=Gchil6404.t1|Name=Gchil6404.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1815bp|location=Sequence derived from alignment at tig00000196_pilon:702028..703842- (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGACAATCAGATTCTGAGCAACCTGTGGACGAATTGGGCGAACGAGAC
CACGGATCTGTGCAAAATCAAAGCGTATAGAGATGCTGACCTTTCAGATG
AGCAGGTGCATGCGGGCCTGAGCCAATGCCGGAAATATATCTTTCGCATC
GCCGAGAACTTCAACCAAACTGTTATGCAAAAGCACCAGCTCGTTTCATT
TCAGTGGTGTGGCGACGGTACTAATGGTACACACAATCCAACTGAAGAAG
AAATTGCCAGCAGCCCATTCTGGGTGTTTGGCTTTCGTATCGGTTCTGAT
TCTGCTGAAAACAAGGTCAGTATTGTCTGCCATCTTGATACCGTTCCGGC
GTCGGACGGAGATGGATGGACGCCGTTCACCCCAACGCAAGAGGAGAGAG
ATTATCCTGGTGGAACAACCTCACCTCAGCAGTTTCTGGTAGGTAGGGGT
TGCATCGACGACAAGGGACCGGCCATGTCTGCTTTCATTATGTTCCGTGC
TCTTGCTCAGACGTATGACAAGGCTGAACCAGATTTATTTGAGACAACGC
AACTGGAGATCATCTTTGATACATCTGAAGAATGGGATATGTCGACACCC
AGGTACATGTTGGATCCTGGTACGAAACTTCCTAGCTTCGGCGTTGTTTA
CGATGCTTGGTGGATTGTTCGAGCTGAGAAAGGTTGCGAACGACCCGTGT
TTTTTGTGGGTCCGATGGACGAATCTCCTGAGGTGCCTTTGTACGCGTCT
GCCATGTACACATCTTCGAACAATTCTTGTAACACCATTCCGGATTGGGC
TAAGGTTGAGGTAACTGGTCACCCAGCAGCGCTAGCTACATTTAAGGAGA
CTGTACCGGACGTGTTTAAAAACTTTACTTTCGATGATCCGAATTATTAC
AGAGGCGTTCTTGAAGTGGACTCTCAAAGTGACTCAAACGGAACACTAAC
GAAGGTAATTCTAACGGTCAATGTCGAAGGCGCCCAACACGGATCAGCCC
CTGATCAGAATCGCCTCAACGGAGTGAACCCGTTTGTGTCGCTCTCGAAC
TTTGTCGCTGGCCTGTCTGACGCTGGAACTTTGGGCGTAAATGCTGTAAG
TTCAATGGCGAAATTCATCCAATGGACATGGGGAACTTTTGCGTTTGGAG
AGAATCACGAATCGCTCTATAAGCATGACTCGATATTTTCAGAGGGTAAT
GGAACAACGTATGGCGTGACAAAGAGTACCATGCAGGAAGATGGATCTTT
AAAACTAGAAATTGATATCAGATACGCTTTGCCTCATCACGCTCTGGAAT
GGGATGGAGAGACCGAGGGGGAGTTGGACGGCAATAGTAAGTTCAGCGCC
ATTTTCACTACCCTTGCGGATAGGTTCAATGGAACTCATCCGACACTTGG
AAGTGTTTCAGTGAAGCCCAAGACCATCTTCGGACCTGACATCCGAGTGC
CGGATTCAAACGAAAACTATCTCAAGGCAGAAGAGGCATTCCGAAAGGTG
ATGATGATGAACCCGCCCCGCTTGGCGATTGGGGGAGGTACGGATGCAAA
GGGAAATCTAGCTTTGTTGGCGATGGGTCCACTGTTTGATACGGACATGG
GCATGCCGATAAGCTACCATGGCATTTCTGAGGGAGCGCCAATGACTGAT
ATGCAGGTCAGCACGCAAATTATCTACAATCTATTTGAATCCGAGTTGAA
GGATCCAAGTAGCGTAAAGATGAACAAGCTGATGAGACAGAAGAAAGAAG
CGAATATGGTGGCGGCACTTAAGAAGAATGTTAGTAGAGCACGTAAACAC
TGCTGTTTCCGCTAG
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protein sequence of Gchil6404.t1

>Gchil6404.t1 ID=Gchil6404.t1|Name=Gchil6404.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=605bp
MDNQILSNLWTNWANETTDLCKIKAYRDADLSDEQVHAGLSQCRKYIFRI
AENFNQTVMQKHQLVSFQWCGDGTNGTHNPTEEEIASSPFWVFGFRIGSD
SAENKVSIVCHLDTVPASDGDGWTPFTPTQEERDYPGGTTSPQQFLVGRG
CIDDKGPAMSAFIMFRALAQTYDKAEPDLFETTQLEIIFDTSEEWDMSTP
RYMLDPGTKLPSFGVVYDAWWIVRAEKGCERPVFFVGPMDESPEVPLYAS
AMYTSSNNSCNTIPDWAKVEVTGHPAALATFKETVPDVFKNFTFDDPNYY
RGVLEVDSQSDSNGTLTKVILTVNVEGAQHGSAPDQNRLNGVNPFVSLSN
FVAGLSDAGTLGVNAVSSMAKFIQWTWGTFAFGENHESLYKHDSIFSEGN
GTTYGVTKSTMQEDGSLKLEIDIRYALPHHALEWDGETEGELDGNSKFSA
IFTTLADRFNGTHPTLGSVSVKPKTIFGPDIRVPDSNENYLKAEEAFRKV
MMMNPPRLAIGGGTDAKGNLALLAMGPLFDTDMGMPISYHGISEGAPMTD
MQVSTQIIYNLFESELKDPSSVKMNKLMRQKKEANMVAALKKNVSRARKH
CCFR*
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mRNA from alignment at tig00000196_pilon:702028..703842-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gchil6404.t1 ID=Gchil6404.t1|Name=Gchil6404.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1815bp|location=Sequence derived from alignment at tig00000196_pilon:702028..703842- (Gracilaria chilensis NLEC103_M9 male)
ATGGACAATCAGATTCTGAGCAACCTGTGGACGAATTGGGCGAACGAGAC
CACGGATCTGTGCAAAATCAAAGCGTATAGAGATGCTGACCTTTCAGATG
AGCAGGTGCATGCGGGCCTGAGCCAATGCCGGAAATATATCTTTCGCATC
GCCGAGAACTTCAACCAAACTGTTATGCAAAAGCACCAGCTCGTTTCATT
TCAGTGGTGTGGCGACGGTACTAATGGTACACACAATCCAACTGAAGAAG
AAATTGCCAGCAGCCCATTCTGGGTGTTTGGCTTTCGTATCGGTTCTGAT
TCTGCTGAAAACAAGGTCAGTATTGTCTGCCATCTTGATACCGTTCCGGC
GTCGGACGGAGATGGATGGACGCCGTTCACCCCAACGCAAGAGGAGAGAG
ATTATCCTGGTGGAACAACCTCACCTCAGCAGTTTCTGGTAGGTAGGGGT
TGCATCGACGACAAGGGACCGGCCATGTCTGCTTTCATTATGTTCCGTGC
TCTTGCTCAGACGTATGACAAGGCTGAACCAGATTTATTTGAGACAACGC
AACTGGAGATCATCTTTGATACATCTGAAGAATGGGATATGTCGACACCC
AGGTACATGTTGGATCCTGGTACGAAACTTCCTAGCTTCGGCGTTGTTTA
CGATGCTTGGTGGATTGTTCGAGCTGAGAAAGGTTGCGAACGACCCGTGT
TTTTTGTGGGTCCGATGGACGAATCTCCTGAGGTGCCTTTGTACGCGTCT
GCCATGTACACATCTTCGAACAATTCTTGTAACACCATTCCGGATTGGGC
TAAGGTTGAGGTAACTGGTCACCCAGCAGCGCTAGCTACATTTAAGGAGA
CTGTACCGGACGTGTTTAAAAACTTTACTTTCGATGATCCGAATTATTAC
AGAGGCGTTCTTGAAGTGGACTCTCAAAGTGACTCAAACGGAACACTAAC
GAAGGTAATTCTAACGGTCAATGTCGAAGGCGCCCAACACGGATCAGCCC
CTGATCAGAATCGCCTCAACGGAGTGAACCCGTTTGTGTCGCTCTCGAAC
TTTGTCGCTGGCCTGTCTGACGCTGGAACTTTGGGCGTAAATGCTGTAAG
TTCAATGGCGAAATTCATCCAATGGACATGGGGAACTTTTGCGTTTGGAG
AGAATCACGAATCGCTCTATAAGCATGACTCGATATTTTCAGAGGGTAAT
GGAACAACGTATGGCGTGACAAAGAGTACCATGCAGGAAGATGGATCTTT
AAAACTAGAAATTGATATCAGATACGCTTTGCCTCATCACGCTCTGGAAT
GGGATGGAGAGACCGAGGGGGAGTTGGACGGCAATAGTAAGTTCAGCGCC
ATTTTCACTACCCTTGCGGATAGGTTCAATGGAACTCATCCGACACTTGG
AAGTGTTTCAGTGAAGCCCAAGACCATCTTCGGACCTGACATCCGAGTGC
CGGATTCAAACGAAAACTATCTCAAGGCAGAAGAGGCATTCCGAAAGGTG
ATGATGATGAACCCGCCCCGCTTGGCGATTGGGGGAGGTACGGATGCAAA
GGGAAATCTAGCTTTGTTGGCGATGGGTCCACTGTTTGATACGGACATGG
GCATGCCGATAAGCTACCATGGCATTTCTGAGGGAGCGCCAATGACTGAT
ATGCAGGTCAGCACGCAAATTATCTACAATCTATTTGAATCCGAGTTGAA
GGATCCAAGTAGCGTAAAGATGAACAAGCTGATGAGACAGAAGAAAGAAG
CGAATATGGTGGCGGCACTTAAGAAGAATGTTAGTAGAGCACGTAAACAC
TGCTGTTTCCGCTAG
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Coding sequence (CDS) from alignment at tig00000196_pilon:702028..703842-

>Gchil6404.t1 ID=Gchil6404.t1|Name=Gchil6404.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=1815bp|location=Sequence derived from alignment at tig00000196_pilon:702028..703842- (Gracilaria chilensis NLEC103_M9 male)
ATGGACAATCAGATTCTGAGCAACCTGTGGACGAATTGGGCGAACGAGAC
CACGGATCTGTGCAAAATCAAAGCGTATAGAGATGCTGACCTTTCAGATG
AGCAGGTGCATGCGGGCCTGAGCCAATGCCGGAAATATATCTTTCGCATC
GCCGAGAACTTCAACCAAACTGTTATGCAAAAGCACCAGCTCGTTTCATT
TCAGTGGTGTGGCGACGGTACTAATGGTACACACAATCCAACTGAAGAAG
AAATTGCCAGCAGCCCATTCTGGGTGTTTGGCTTTCGTATCGGTTCTGAT
TCTGCTGAAAACAAGGTCAGTATTGTCTGCCATCTTGATACCGTTCCGGC
GTCGGACGGAGATGGATGGACGCCGTTCACCCCAACGCAAGAGGAGAGAG
ATTATCCTGGTGGAACAACCTCACCTCAGCAGTTTCTGGTAGGTAGGGGT
TGCATCGACGACAAGGGACCGGCCATGTCTGCTTTCATTATGTTCCGTGC
TCTTGCTCAGACGTATGACAAGGCTGAACCAGATTTATTTGAGACAACGC
AACTGGAGATCATCTTTGATACATCTGAAGAATGGGATATGTCGACACCC
AGGTACATGTTGGATCCTGGTACGAAACTTCCTAGCTTCGGCGTTGTTTA
CGATGCTTGGTGGATTGTTCGAGCTGAGAAAGGTTGCGAACGACCCGTGT
TTTTTGTGGGTCCGATGGACGAATCTCCTGAGGTGCCTTTGTACGCGTCT
GCCATGTACACATCTTCGAACAATTCTTGTAACACCATTCCGGATTGGGC
TAAGGTTGAGGTAACTGGTCACCCAGCAGCGCTAGCTACATTTAAGGAGA
CTGTACCGGACGTGTTTAAAAACTTTACTTTCGATGATCCGAATTATTAC
AGAGGCGTTCTTGAAGTGGACTCTCAAAGTGACTCAAACGGAACACTAAC
GAAGGTAATTCTAACGGTCAATGTCGAAGGCGCCCAACACGGATCAGCCC
CTGATCAGAATCGCCTCAACGGAGTGAACCCGTTTGTGTCGCTCTCGAAC
TTTGTCGCTGGCCTGTCTGACGCTGGAACTTTGGGCGTAAATGCTGTAAG
TTCAATGGCGAAATTCATCCAATGGACATGGGGAACTTTTGCGTTTGGAG
AGAATCACGAATCGCTCTATAAGCATGACTCGATATTTTCAGAGGGTAAT
GGAACAACGTATGGCGTGACAAAGAGTACCATGCAGGAAGATGGATCTTT
AAAACTAGAAATTGATATCAGATACGCTTTGCCTCATCACGCTCTGGAAT
GGGATGGAGAGACCGAGGGGGAGTTGGACGGCAATAGTAAGTTCAGCGCC
ATTTTCACTACCCTTGCGGATAGGTTCAATGGAACTCATCCGACACTTGG
AAGTGTTTCAGTGAAGCCCAAGACCATCTTCGGACCTGACATCCGAGTGC
CGGATTCAAACGAAAACTATCTCAAGGCAGAAGAGGCATTCCGAAAGGTG
ATGATGATGAACCCGCCCCGCTTGGCGATTGGGGGAGGTACGGATGCAAA
GGGAAATCTAGCTTTGTTGGCGATGGGTCCACTGTTTGATACGGACATGG
GCATGCCGATAAGCTACCATGGCATTTCTGAGGGAGCGCCAATGACTGAT
ATGCAGGTCAGCACGCAAATTATCTACAATCTATTTGAATCCGAGTTGAA
GGATCCAAGTAGCGTAAAGATGAACAAGCTGATGAGACAGAAGAAAGAAG
CGAATATGGTGGCGGCACTTAAGAAGAATGTTAGTAGAGCACGTAAACAC
TGCTGTTTCCGCTAG
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