Gchil6310.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gchil6310.t1
Unique Name	Gchil6310.t1
Type	mRNA
Organism	Gracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length	726

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
tig00000196_pilon	contig	tig00000196_pilon:75659..77836 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria chilensis NLEC103_M9 male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	45157.CMT459CT
Preferred name	AAE15
PFAMs	AMP-binding
Max annot lvl	2759\|Eukaryota
KEGG rclass	RC00004,RC00014
KEGG ko	ko:K01897
KEGG TC	4.C.1.1
KEGG Reaction	R01280
KEGG Pathway	ko00061,ko00071,ko01100,ko01212,ko02024,ko03320,ko04146,ko04216,ko04714,ko04920,map00061,map00071,map01100,map01212,map02024,map03320,map04146,map04216,map04714,map04920
KEGG Module	M00086
GOs	GO:0003674,GO:0003824,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006082,GO:0006629,GO:0006631,GO:0006633,GO:0008150,GO:0008152,GO:0008610,GO:0008922,GO:0009058,GO:0009507,GO:0009526,GO:0009536,GO:0009941,GO:0009987,GO:0015645,GO:0016053,GO:0016874,GO:0016877,GO:0016878,GO:0019752,GO:0030497,GO:0031967,GO:0031975,GO:0032787,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043436,GO:0044237,GO:0044238,GO:0044249,GO:0044255,GO:0044281,GO:0044283,GO:0044422,GO:0044424,GO:0044434,GO:0044435,GO:0044444,GO:0044446,GO:0044464,GO:0046394,GO:0071704,GO:0072330,GO:1901576
Evalue	5.65e-156
EggNOG OGs	COG1022@1\|root,KOG1256@2759\|Eukaryota
EC	6.2.1.3
Description	decanoate-CoA ligase activity
COG category	I
BRITE	ko00000,ko00001,ko00002,ko01000,ko01004,ko04147

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gchil6310	Gchil6310	Gracilaria chilensis NLEC103_M9 male	gene	tig00000196_pilon 75659..77836 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil6310.t1.start1	Gchil6310.t1.start1	Gracilaria chilensis NLEC103_M9 male	start_codon	tig00000196_pilon 75659..75661 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil6310.t1.CDS1	Gchil6310.t1.CDS1	Gracilaria chilensis NLEC103_M9 male	CDS	tig00000196_pilon 75659..77836 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil6310.t1.exon1	Gchil6310.t1.exon1	Gracilaria chilensis NLEC103_M9 male	exon	tig00000196_pilon 75659..77836 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil6310.t1.stop1	Gchil6310.t1.stop1	Gracilaria chilensis NLEC103_M9 male	stop_codon	tig00000196_pilon 77834..77836 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil6310.t1	Gchil6310.t1	Gracilaria chilensis NLEC103_M9 male	polypeptide	tig00000196_pilon 75659..77836 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at tig00000196_pilon:75659..77836+
coding sequence from alignment at tig00000196_pilon:75659..77836+

mRNA sequence

>Gchil6310.t1 ID=Gchil6310.t1|Name=Gchil6310.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=726bp
MGVVAFQPSLPLPPPLSSSRSRAPARPRRAVAAARRLRLAVSPPQSPETR
VRPQLYPPHVTPYPRPPGSSGEQALKVRTLRSVPELFLALAQPPTAHLTA
LVDVHHQPHQHLTFAQLAEQINCCTAALRLLGLRPHSNVALFSENSARWC
VLDQAIMSAGAAAAVRGVSAPPHELHFILQHSESKVLFVENVSVLRVLCQ
EGVHFSALQFVVLLFGHAQPAKQFVIDVPVYSFEDLMAMGANYTRDLVKP
LPNRSDIATLLYTSGTTGNPKGVVLTHSNLLSQLEDVSLGSFDPSPGEVF
LSVLPCWHVFERTAEYWSLSKGMKLVYSDKRHFREDLRKHKPHMLISVPR
VFENLYAAVTQKIKRSSPLRRALFAFFMAVSMAFIGARRRLRRQHIHAAP
PAGSLATALCALQMALLTPLYALANMLLWRKIRAGFGGRLRICLSGGGSL
AGYLEDFFEIAGIEICIGYGLTETSPVIANRFGESNVRGSTGMELPRAYV
RIVDTESGVAVPFGEQGRLCVKGPYVFREYWKDQGATAKAFDSEGYFDTG
DIAYRARGGDIVISGRAKELIVLSNGENVEPAPIEDVVMASPLIDQLMLV
GQDEKALGALVVPNVAELEAQGLVEEGTGARVGKLLDDEAGNREQLRELE
ARLMRSDEIVNRVEEEIAQRNQERVAYTANDRVVHTHLLLVPFTVENGMM
TQTLKLKKKIVAARYAKEIEAMYRK*

spliced messenger RNA

>Gchil6310.t1 ID=Gchil6310.t1|Name=Gchil6310.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=2178bp|location=Sequence derived from alignment at tig00000196_pilon:75659..77836+ (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGGCGTCGTGGCGTTCCAACCGTCGCTACCGCTGCCGCCGCCTCTTTC
TTCGTCGCGGTCGCGCGCCCCAGCGCGGCCCCGCCGCGCGGTGGCGGCCG
CTCGTCGACTGCGACTCGCCGTGTCGCCGCCGCAGTCGCCCGAGACGCGC
GTGCGCCCTCAGCTGTACCCCCCCCACGTCACGCCGTACCCGCGCCCGCC
CGGCTCGTCCGGTGAGCAGGCGCTCAAGGTACGTACGCTGCGCAGCGTGC
CTGAGCTCTTTCTCGCGCTGGCCCAGCCGCCCACGGCCCACCTCACCGCG
CTCGTCGACGTGCACCACCAGCCGCACCAGCACCTCACCTTTGCGCAGCT
CGCAGAGCAGATCAATTGCTGCACTGCCGCGCTGCGCTTACTCGGGCTGC
GTCCCCACTCCAACGTCGCCCTCTTCTCCGAGAACTCCGCGCGCTGGTGC
GTGCTCGACCAGGCTATCATGTCGGCTGGCGCGGCCGCCGCCGTGCGCGG
CGTTTCCGCTCCCCCCCACGAGCTGCACTTTATCCTGCAGCACTCGGAGA
GCAAGGTGCTGTTCGTCGAAAACGTCTCCGTTCTCAGAGTGTTGTGCCAA
GAGGGCGTGCACTTTTCCGCCCTGCAGTTTGTTGTGCTGCTGTTTGGTCA
CGCGCAGCCTGCCAAGCAATTCGTAATCGACGTTCCCGTGTACTCGTTCG
AAGACCTCATGGCCATGGGCGCTAACTACACGCGCGACCTAGTCAAACCG
CTGCCCAACCGTTCGGACATTGCCACCCTGCTGTACACGTCGGGCACCAC
GGGCAACCCCAAGGGCGTCGTGCTCACCCACTCCAACCTGCTTTCCCAGT
TGGAGGATGTGTCGCTGGGCTCGTTCGACCCGTCGCCAGGAGAAGTTTTC
CTCTCCGTTCTACCGTGCTGGCATGTTTTCGAGCGCACTGCCGAGTATTG
GAGCCTGAGCAAGGGAATGAAGCTCGTGTATTCGGACAAGCGACATTTCA
GGGAAGATCTGCGGAAGCACAAGCCACACATGCTCATCTCCGTTCCGCGC
GTGTTTGAGAATCTGTACGCTGCCGTCACACAGAAGATTAAGCGCTCCTC
CCCGCTCAGAAGGGCTCTGTTTGCCTTTTTCATGGCCGTCAGCATGGCCT
TTATCGGCGCGCGCCGCCGCCTGCGAAGGCAGCACATTCATGCCGCGCCG
CCCGCCGGCAGCTTGGCGACAGCGCTGTGCGCGCTGCAAATGGCTCTTCT
CACGCCGCTGTACGCGTTGGCAAACATGCTGCTCTGGCGCAAGATACGCG
CCGGGTTTGGAGGCAGGCTGCGCATTTGCCTGTCTGGCGGCGGCAGTCTT
GCGGGCTACCTGGAAGACTTTTTCGAGATTGCCGGCATTGAGATTTGCAT
TGGCTACGGGCTTACGGAGACGTCGCCGGTCATTGCTAATCGGTTTGGGG
AGAGCAACGTGCGCGGCTCGACAGGCATGGAGCTGCCGAGGGCGTACGTG
AGGATTGTTGACACGGAGAGTGGCGTGGCGGTTCCGTTTGGTGAGCAGGG
GCGGCTGTGTGTGAAGGGCCCGTATGTGTTTAGGGAGTACTGGAAAGATC
AGGGAGCGACTGCCAAGGCGTTTGACAGCGAGGGGTACTTTGACACGGGG
GACATTGCGTACAGGGCGCGGGGGGGCGACATTGTGATCAGCGGCCGAGC
AAAGGAGCTGATTGTGTTGTCCAATGGAGAAAACGTGGAGCCGGCGCCGA
TCGAGGATGTGGTGATGGCCAGTCCGTTAATTGATCAGCTGATGCTGGTC
GGGCAGGATGAAAAGGCGCTGGGGGCGCTAGTGGTGCCGAATGTGGCGGA
GCTAGAGGCGCAGGGGCTGGTGGAAGAAGGAACGGGCGCGCGGGTGGGAA
AATTACTGGACGATGAGGCGGGCAACCGAGAGCAGCTGAGAGAGCTTGAG
GCGAGGCTGATGCGGTCGGACGAGATTGTGAACCGGGTGGAGGAGGAGAT
TGCGCAGCGAAATCAGGAGCGGGTGGCGTACACGGCGAACGATCGTGTTG
TGCACACGCACTTGCTGTTGGTGCCGTTCACGGTGGAGAATGGGATGATG
ACGCAAACGCTCAAGCTGAAGAAGAAGATTGTGGCTGCCAGGTACGCGAA
GGAGATCGAAGCCATGTACAGAAAATAG

protein sequence of Gchil6310.t1

>Gchil6310.t1 ID=Gchil6310.t1|Name=Gchil6310.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=726bp
MGVVAFQPSLPLPPPLSSSRSRAPARPRRAVAAARRLRLAVSPPQSPETR
VRPQLYPPHVTPYPRPPGSSGEQALKVRTLRSVPELFLALAQPPTAHLTA
LVDVHHQPHQHLTFAQLAEQINCCTAALRLLGLRPHSNVALFSENSARWC
VLDQAIMSAGAAAAVRGVSAPPHELHFILQHSESKVLFVENVSVLRVLCQ
EGVHFSALQFVVLLFGHAQPAKQFVIDVPVYSFEDLMAMGANYTRDLVKP
LPNRSDIATLLYTSGTTGNPKGVVLTHSNLLSQLEDVSLGSFDPSPGEVF
LSVLPCWHVFERTAEYWSLSKGMKLVYSDKRHFREDLRKHKPHMLISVPR
VFENLYAAVTQKIKRSSPLRRALFAFFMAVSMAFIGARRRLRRQHIHAAP
PAGSLATALCALQMALLTPLYALANMLLWRKIRAGFGGRLRICLSGGGSL
AGYLEDFFEIAGIEICIGYGLTETSPVIANRFGESNVRGSTGMELPRAYV
RIVDTESGVAVPFGEQGRLCVKGPYVFREYWKDQGATAKAFDSEGYFDTG
DIAYRARGGDIVISGRAKELIVLSNGENVEPAPIEDVVMASPLIDQLMLV
GQDEKALGALVVPNVAELEAQGLVEEGTGARVGKLLDDEAGNREQLRELE
ARLMRSDEIVNRVEEEIAQRNQERVAYTANDRVVHTHLLLVPFTVENGMM
TQTLKLKKKIVAARYAKEIEAMYRK*

mRNA from alignment at tig00000196_pilon:75659..77836+

Legend: start_codonpolypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gchil6310.t1 ID=Gchil6310.t1|Name=Gchil6310.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=2178bp|location=Sequence derived from alignment at tig00000196_pilon:75659..77836+ (Gracilaria chilensis NLEC103_M9 male)
ATGGGCGTCGTGGCGTTCCAACCGTCGCTACCGCTGCCGCCGCCTCTTTC
TTCGTCGCGGTCGCGCGCCCCAGCGCGGCCCCGCCGCGCGGTGGCGGCCG
CTCGTCGACTGCGACTCGCCGTGTCGCCGCCGCAGTCGCCCGAGACGCGC
GTGCGCCCTCAGCTGTACCCCCCCCACGTCACGCCGTACCCGCGCCCGCC
CGGCTCGTCCGGTGAGCAGGCGCTCAAGGTACGTACGCTGCGCAGCGTGC
CTGAGCTCTTTCTCGCGCTGGCCCAGCCGCCCACGGCCCACCTCACCGCG
CTCGTCGACGTGCACCACCAGCCGCACCAGCACCTCACCTTTGCGCAGCT
CGCAGAGCAGATCAATTGCTGCACTGCCGCGCTGCGCTTACTCGGGCTGC
GTCCCCACTCCAACGTCGCCCTCTTCTCCGAGAACTCCGCGCGCTGGTGC
GTGCTCGACCAGGCTATCATGTCGGCTGGCGCGGCCGCCGCCGTGCGCGG
CGTTTCCGCTCCCCCCCACGAGCTGCACTTTATCCTGCAGCACTCGGAGA
GCAAGGTGCTGTTCGTCGAAAACGTCTCCGTTCTCAGAGTGTTGTGCCAA
GAGGGCGTGCACTTTTCCGCCCTGCAGTTTGTTGTGCTGCTGTTTGGTCA
CGCGCAGCCTGCCAAGCAATTCGTAATCGACGTTCCCGTGTACTCGTTCG
AAGACCTCATGGCCATGGGCGCTAACTACACGCGCGACCTAGTCAAACCG
CTGCCCAACCGTTCGGACATTGCCACCCTGCTGTACACGTCGGGCACCAC
GGGCAACCCCAAGGGCGTCGTGCTCACCCACTCCAACCTGCTTTCCCAGT
TGGAGGATGTGTCGCTGGGCTCGTTCGACCCGTCGCCAGGAGAAGTTTTC
CTCTCCGTTCTACCGTGCTGGCATGTTTTCGAGCGCACTGCCGAGTATTG
GAGCCTGAGCAAGGGAATGAAGCTCGTGTATTCGGACAAGCGACATTTCA
GGGAAGATCTGCGGAAGCACAAGCCACACATGCTCATCTCCGTTCCGCGC
GTGTTTGAGAATCTGTACGCTGCCGTCACACAGAAGATTAAGCGCTCCTC
CCCGCTCAGAAGGGCTCTGTTTGCCTTTTTCATGGCCGTCAGCATGGCCT
TTATCGGCGCGCGCCGCCGCCTGCGAAGGCAGCACATTCATGCCGCGCCG
CCCGCCGGCAGCTTGGCGACAGCGCTGTGCGCGCTGCAAATGGCTCTTCT
CACGCCGCTGTACGCGTTGGCAAACATGCTGCTCTGGCGCAAGATACGCG
CCGGGTTTGGAGGCAGGCTGCGCATTTGCCTGTCTGGCGGCGGCAGTCTT
GCGGGCTACCTGGAAGACTTTTTCGAGATTGCCGGCATTGAGATTTGCAT
TGGCTACGGGCTTACGGAGACGTCGCCGGTCATTGCTAATCGGTTTGGGG
AGAGCAACGTGCGCGGCTCGACAGGCATGGAGCTGCCGAGGGCGTACGTG
AGGATTGTTGACACGGAGAGTGGCGTGGCGGTTCCGTTTGGTGAGCAGGG
GCGGCTGTGTGTGAAGGGCCCGTATGTGTTTAGGGAGTACTGGAAAGATC
AGGGAGCGACTGCCAAGGCGTTTGACAGCGAGGGGTACTTTGACACGGGG
GACATTGCGTACAGGGCGCGGGGGGGCGACATTGTGATCAGCGGCCGAGC
AAAGGAGCTGATTGTGTTGTCCAATGGAGAAAACGTGGAGCCGGCGCCGA
TCGAGGATGTGGTGATGGCCAGTCCGTTAATTGATCAGCTGATGCTGGTC
GGGCAGGATGAAAAGGCGCTGGGGGCGCTAGTGGTGCCGAATGTGGCGGA
GCTAGAGGCGCAGGGGCTGGTGGAAGAAGGAACGGGCGCGCGGGTGGGAA
AATTACTGGACGATGAGGCGGGCAACCGAGAGCAGCTGAGAGAGCTTGAG
GCGAGGCTGATGCGGTCGGACGAGATTGTGAACCGGGTGGAGGAGGAGAT
TGCGCAGCGAAATCAGGAGCGGGTGGCGTACACGGCGAACGATCGTGTTG
TGCACACGCACTTGCTGTTGGTGCCGTTCACGGTGGAGAATGGGATGATG
ACGCAAACGCTCAAGCTGAAGAAGAAGATTGTGGCTGCCAGGTACGCGAA
GGAGATCGAAGCCATGTACAGAAAATAG

Coding sequence (CDS) from alignment at tig00000196_pilon:75659..77836+

>Gchil6310.t1 ID=Gchil6310.t1|Name=Gchil6310.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=2178bp|location=Sequence derived from alignment at tig00000196_pilon:75659..77836+ (Gracilaria chilensis NLEC103_M9 male)
ATGGGCGTCGTGGCGTTCCAACCGTCGCTACCGCTGCCGCCGCCTCTTTC
TTCGTCGCGGTCGCGCGCCCCAGCGCGGCCCCGCCGCGCGGTGGCGGCCG
CTCGTCGACTGCGACTCGCCGTGTCGCCGCCGCAGTCGCCCGAGACGCGC
GTGCGCCCTCAGCTGTACCCCCCCCACGTCACGCCGTACCCGCGCCCGCC
CGGCTCGTCCGGTGAGCAGGCGCTCAAGGTACGTACGCTGCGCAGCGTGC
CTGAGCTCTTTCTCGCGCTGGCCCAGCCGCCCACGGCCCACCTCACCGCG
CTCGTCGACGTGCACCACCAGCCGCACCAGCACCTCACCTTTGCGCAGCT
CGCAGAGCAGATCAATTGCTGCACTGCCGCGCTGCGCTTACTCGGGCTGC
GTCCCCACTCCAACGTCGCCCTCTTCTCCGAGAACTCCGCGCGCTGGTGC
GTGCTCGACCAGGCTATCATGTCGGCTGGCGCGGCCGCCGCCGTGCGCGG
CGTTTCCGCTCCCCCCCACGAGCTGCACTTTATCCTGCAGCACTCGGAGA
GCAAGGTGCTGTTCGTCGAAAACGTCTCCGTTCTCAGAGTGTTGTGCCAA
GAGGGCGTGCACTTTTCCGCCCTGCAGTTTGTTGTGCTGCTGTTTGGTCA
CGCGCAGCCTGCCAAGCAATTCGTAATCGACGTTCCCGTGTACTCGTTCG
AAGACCTCATGGCCATGGGCGCTAACTACACGCGCGACCTAGTCAAACCG
CTGCCCAACCGTTCGGACATTGCCACCCTGCTGTACACGTCGGGCACCAC
GGGCAACCCCAAGGGCGTCGTGCTCACCCACTCCAACCTGCTTTCCCAGT
TGGAGGATGTGTCGCTGGGCTCGTTCGACCCGTCGCCAGGAGAAGTTTTC
CTCTCCGTTCTACCGTGCTGGCATGTTTTCGAGCGCACTGCCGAGTATTG
GAGCCTGAGCAAGGGAATGAAGCTCGTGTATTCGGACAAGCGACATTTCA
GGGAAGATCTGCGGAAGCACAAGCCACACATGCTCATCTCCGTTCCGCGC
GTGTTTGAGAATCTGTACGCTGCCGTCACACAGAAGATTAAGCGCTCCTC
CCCGCTCAGAAGGGCTCTGTTTGCCTTTTTCATGGCCGTCAGCATGGCCT
TTATCGGCGCGCGCCGCCGCCTGCGAAGGCAGCACATTCATGCCGCGCCG
CCCGCCGGCAGCTTGGCGACAGCGCTGTGCGCGCTGCAAATGGCTCTTCT
CACGCCGCTGTACGCGTTGGCAAACATGCTGCTCTGGCGCAAGATACGCG
CCGGGTTTGGAGGCAGGCTGCGCATTTGCCTGTCTGGCGGCGGCAGTCTT
GCGGGCTACCTGGAAGACTTTTTCGAGATTGCCGGCATTGAGATTTGCAT
TGGCTACGGGCTTACGGAGACGTCGCCGGTCATTGCTAATCGGTTTGGGG
AGAGCAACGTGCGCGGCTCGACAGGCATGGAGCTGCCGAGGGCGTACGTG
AGGATTGTTGACACGGAGAGTGGCGTGGCGGTTCCGTTTGGTGAGCAGGG
GCGGCTGTGTGTGAAGGGCCCGTATGTGTTTAGGGAGTACTGGAAAGATC
AGGGAGCGACTGCCAAGGCGTTTGACAGCGAGGGGTACTTTGACACGGGG
GACATTGCGTACAGGGCGCGGGGGGGCGACATTGTGATCAGCGGCCGAGC
AAAGGAGCTGATTGTGTTGTCCAATGGAGAAAACGTGGAGCCGGCGCCGA
TCGAGGATGTGGTGATGGCCAGTCCGTTAATTGATCAGCTGATGCTGGTC
GGGCAGGATGAAAAGGCGCTGGGGGCGCTAGTGGTGCCGAATGTGGCGGA
GCTAGAGGCGCAGGGGCTGGTGGAAGAAGGAACGGGCGCGCGGGTGGGAA
AATTACTGGACGATGAGGCGGGCAACCGAGAGCAGCTGAGAGAGCTTGAG
GCGAGGCTGATGCGGTCGGACGAGATTGTGAACCGGGTGGAGGAGGAGAT
TGCGCAGCGAAATCAGGAGCGGGTGGCGTACACGGCGAACGATCGTGTTG
TGCACACGCACTTGCTGTTGGTGCCGTTCACGGTGGAGAATGGGATGATG
ACGCAAACGCTCAAGCTGAAGAAGAAGATTGTGGCTGCCAGGTACGCGAA
GGAGATCGAAGCCATGTACAGAAAATAG