Gchil3311.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGchil3311.t1
Unique NameGchil3311.t1
TypemRNA
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length87
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000168_piloncontigtig00000168_pilon:102792..103162 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog936053.I1CUC0
PFAMsSPT_ssu-like
Max annot lvl4751|Fungi
Evalue1.02e-07
EggNOG OGs29P11@1|root,2RWCC@2759|Eukaryota,39IWZ@33154|Opisthokonta,3Q2PI@4751|Fungi,1GXWB@112252|Fungi incertae sedis
DescriptionSmall subunit of serine palmitoyltransferase-like
COG categoryS
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil3311Gchil3311Gracilaria chilensis NLEC103_M9 malegenetig00000168_pilon 102792..103162 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil3311.t1Gchil3311.t1Gracilaria chilensis NLEC103_M9 malepolypeptidetig00000168_pilon 102792..103162 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil3311.t1.start1Gchil3311.t1.start1Gracilaria chilensis NLEC103_M9 malestart_codontig00000168_pilon 102792..102794 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil3311.t1.CDS1Gchil3311.t1.CDS1Gracilaria chilensis NLEC103_M9 maleCDStig00000168_pilon 102792..102889 +
Gchil3311.t1.CDS2Gchil3311.t1.CDS2Gracilaria chilensis NLEC103_M9 maleCDStig00000168_pilon 103000..103162 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil3311.t1.exon1Gchil3311.t1.exon1Gracilaria chilensis NLEC103_M9 maleexontig00000168_pilon 102792..102889 +
Gchil3311.t1.exon2Gchil3311.t1.exon2Gracilaria chilensis NLEC103_M9 maleexontig00000168_pilon 103000..103162 +


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil3311.t1.intron1Gchil3311.t1.intron1Gracilaria chilensis NLEC103_M9 maleintrontig00000168_pilon 102890..102999 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil3311.t1.stop1Gchil3311.t1.stop1Gracilaria chilensis NLEC103_M9 malestop_codontig00000168_pilon 103160..103162 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gchil3311.t1 ID=Gchil3311.t1|Name=Gchil3311.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=87bp
MSAPAASARQDTARTAQPAPPSKRSLVQSINLCIYRYNLSTALYMLQPWE
RALFNTIVIAIVAYIAYGLYNAALHPLFERLAISYM*
back to top

spliced messenger RNA

>Gchil3311.t1 ID=Gchil3311.t1|Name=Gchil3311.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=261bp|location=Sequence derived from alignment at tig00000168_pilon:102792..103162+ (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGTCGGCACCGGCAGCCTCGGCGCGCCAAGACACGGCGCGCACCGCTCA
ACCCGCCCCGCCATCGAAGCGCTCCCTCGTGCAGTCCATCAACCTATGCA
TCTATCGCTACAACCTTAGCACCGCCCTGTACATGCTCCAACCGTGGGAG
CGCGCTCTCTTTAACACTATTGTTATCGCCATTGTTGCCTACATTGCGTA
CGGTCTGTACAACGCAGCCCTTCACCCCTTGTTCGAACGGCTTGCAATTT
CCTACATGTAA
back to top

protein sequence of Gchil3311.t1

>Gchil3311.t1 ID=Gchil3311.t1|Name=Gchil3311.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=87bp
MSAPAASARQDTARTAQPAPPSKRSLVQSINLCIYRYNLSTALYMLQPWE
RALFNTIVIAIVAYIAYGLYNAALHPLFERLAISYM*
back to top

mRNA from alignment at tig00000168_pilon:102792..103162+

Legend: polypeptidestart_codonCDSexonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gchil3311.t1 ID=Gchil3311.t1|Name=Gchil3311.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=371bp|location=Sequence derived from alignment at tig00000168_pilon:102792..103162+ (Gracilaria chilensis NLEC103_M9 male)
ATGTCGGCACCGGCAGCCTCGGCGCGCCAAGACACGGCGCGCACCGCTCA
ACCCGCCCCGCCATCGAAGCGCTCCCTCGTGCAGTCCATCAACCTATGGT
AAGTAGCCGCCATGCACACCACAAAGCGCACGCCCAACAGGCGCACGTCA
ACAAACGCGCCCAGAATCTTACATGTGTGCTTTGTGCCCTCTTCTTCTGT
TCGCGCAGCATCTATCGCTACAACCTTAGCACCGCCCTGTACATGCTCCA
ACCGTGGGAGCGCGCTCTCTTTAACACTATTGTTATCGCCATTGTTGCCT
ACATTGCGTACGGTCTGTACAACGCAGCCCTTCACCCCTTGTTCGAACGG
CTTGCAATTTCCTACATGTAA
back to top

Coding sequence (CDS) from alignment at tig00000168_pilon:102792..103162+

>Gchil3311.t1 ID=Gchil3311.t1|Name=Gchil3311.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=261bp|location=Sequence derived from alignment at tig00000168_pilon:102792..103162+ (Gracilaria chilensis NLEC103_M9 male)
ATGTCGGCACCGGCAGCCTCGGCGCGCCAAGACACGGCGCGCACCGCTCA
ACCCGCCCCGCCATCGAAGCGCTCCCTCGTGCAGTCCATCAACCTATGCA
TCTATCGCTACAACCTTAGCACCGCCCTGTACATGCTCCAACCGTGGGAG
CGCGCTCTCTTTAACACTATTGTTATCGCCATTGTTGCCTACATTGCGTA
CGGTCTGTACAACGCAGCCCTTCACCCCTTGTTCGAACGGCTTGCAATTT
CCTACATGTAA
back to top