Gchil3302.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGchil3302.t1
Unique NameGchil3302.t1
TypemRNA
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length474
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000168_piloncontigtig00000168_pilon:81248..82669 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog45157.CMQ233CT
Preferred namebem46
PFAMsHydrolase_4,Peptidase_S9
Max annot lvl2759|Eukaryota
KEGG koko:K06889
GOsGO:0000322,GO:0000323,GO:0000324,GO:0003674,GO:0003824,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005739,GO:0005773,GO:0005783,GO:0005886,GO:0007275,GO:0008150,GO:0012505,GO:0016020,GO:0016787,GO:0016788,GO:0019866,GO:0022622,GO:0031090,GO:0031967,GO:0031975,GO:0032501,GO:0032502,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044422,GO:0044424,GO:0044444,GO:0044446,GO:0044464,GO:0048364,GO:0048731,GO:0048856,GO:0071944,GO:0099402
Evalue1.91e-87
EggNOG OGsCOG1073@1|root,KOG4391@2759|Eukaryota
Descriptionprotein depalmitoylation
COG categoryO
BRITEko00000
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil3302Gchil3302Gracilaria chilensis NLEC103_M9 malegenetig00000168_pilon 81248..82669 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil3302.t1.stop1Gchil3302.t1.stop1Gracilaria chilensis NLEC103_M9 malestop_codontig00000168_pilon 81248..81250 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil3302.t1.CDS1Gchil3302.t1.CDS1Gracilaria chilensis NLEC103_M9 maleCDStig00000168_pilon 81248..82669 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil3302.t1.exon1Gchil3302.t1.exon1Gracilaria chilensis NLEC103_M9 maleexontig00000168_pilon 81248..82669 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil3302.t1.start1Gchil3302.t1.start1Gracilaria chilensis NLEC103_M9 malestart_codontig00000168_pilon 82667..82669 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil3302.t1Gchil3302.t1Gracilaria chilensis NLEC103_M9 malepolypeptidetig00000168_pilon 81248..82669 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gchil3302.t1 ID=Gchil3302.t1|Name=Gchil3302.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=474bp
MQRSTFAYIPSACLHPRLHRSTFVTPISPKQQPLRSVRVLQPCMTSGSKP
SSKLTSLPRLAVITTAISAALLPLVPMHVYSAPLSVAQSSESISSSTRAS
HALSGRVVRVKYAPSGMLATTISRPALATVQSPVVTRLSAKSHVRKIIPT
TADTLLHKLLKLALLAAIVSFIITAVTISVFWIIQDSLVYKPTKVWRGNP
GSYGMPFFDDVSHCTMDGVEIIGWFIKQPPESFRSARTLIYFHGTDKNAS
FRLRKVVGLYEKCKCNILLLSYRGYGPSTGKPNERGVRIDAESAYEYLKS
RGDVDVGLGGNLWIYGESLGGAVAVYFSHKYQDCINALVLENTFTSLLDM
IKLEFPILGIFRYLSRNRWQSKKRIKNIAIPLLFLSGLKDGYIPPAMMRK
MHALATKSTLKEFVEFENGTHNRTWTAEGFYDSVARFMDRVDTEKGRELV
PKASQMQIFEGRSEEGGRFAATA*
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spliced messenger RNA

>Gchil3302.t1 ID=Gchil3302.t1|Name=Gchil3302.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1422bp|location=Sequence derived from alignment at tig00000168_pilon:81248..82669- (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCAGCGATCCACCTTCGCATATATACCATCTGCTTGCTTGCATCCGCG
CCTGCATCGGTCAACTTTTGTGACCCCCATTTCCCCGAAGCAGCAGCCAC
TTCGATCAGTTCGCGTTCTTCAACCATGCATGACCTCGGGCTCCAAGCCC
TCCTCCAAGCTAACTTCGCTGCCCCGATTAGCCGTCATTACGACTGCCAT
AAGCGCCGCACTATTACCTTTGGTCCCAATGCATGTTTACTCAGCTCCGC
TTTCCGTTGCGCAATCCTCTGAATCGATTTCGTCCTCAACCCGTGCCAGT
CATGCGCTTTCGGGTCGCGTAGTGCGGGTAAAGTACGCTCCGTCTGGCAT
GCTAGCGACTACCATTTCGAGACCGGCTCTTGCTACAGTTCAATCTCCCG
TTGTTACCAGGCTTTCTGCCAAGTCACATGTGCGTAAAATTATTCCGACG
ACCGCAGACACACTTCTTCACAAGCTTTTAAAACTTGCTTTGTTGGCTGC
TATCGTCAGCTTTATTATAACGGCTGTCACTATTTCTGTGTTTTGGATTA
TTCAAGATTCTCTTGTTTATAAACCCACAAAGGTATGGCGTGGAAACCCG
GGTTCTTATGGAATGCCCTTTTTCGACGATGTCAGTCACTGCACCATGGA
CGGAGTTGAAATTATTGGATGGTTCATCAAACAGCCCCCTGAGAGTTTTC
GCAGCGCGCGAACTCTGATATACTTTCATGGAACTGACAAGAATGCCAGC
TTCAGGCTGAGGAAGGTTGTCGGTTTGTACGAGAAGTGCAAATGTAACAT
TTTGCTGCTGTCTTACAGAGGCTATGGGCCATCCACCGGGAAACCGAACG
AGCGGGGAGTTCGAATCGATGCCGAAAGTGCGTATGAATATCTGAAGAGC
CGTGGAGATGTTGATGTTGGACTAGGGGGCAACTTGTGGATTTACGGAGA
ATCTCTGGGGGGCGCGGTTGCGGTTTATTTTTCCCACAAGTACCAGGACT
GCATAAATGCGCTTGTTTTGGAGAATACTTTCACAAGTCTTCTTGACATG
ATCAAGCTCGAGTTTCCGATATTGGGCATATTCAGATATCTCAGCAGAAA
TAGATGGCAAAGCAAGAAAAGGATCAAGAACATTGCTATTCCGTTACTAT
TTCTCAGCGGTCTAAAGGACGGCTATATCCCCCCAGCTATGATGAGGAAG
ATGCATGCGCTCGCAACTAAATCGACGTTGAAGGAATTTGTAGAATTTGA
AAACGGGACACATAATAGAACGTGGACAGCGGAAGGGTTTTATGACTCTG
TTGCAAGATTCATGGACAGAGTGGATACGGAGAAGGGGCGAGAACTTGTT
CCAAAAGCTTCACAGATGCAAATTTTTGAGGGAAGAAGTGAGGAGGGAGG
GCGCTTCGCTGCAACCGCATAA
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protein sequence of Gchil3302.t1

>Gchil3302.t1 ID=Gchil3302.t1|Name=Gchil3302.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=474bp
MQRSTFAYIPSACLHPRLHRSTFVTPISPKQQPLRSVRVLQPCMTSGSKP
SSKLTSLPRLAVITTAISAALLPLVPMHVYSAPLSVAQSSESISSSTRAS
HALSGRVVRVKYAPSGMLATTISRPALATVQSPVVTRLSAKSHVRKIIPT
TADTLLHKLLKLALLAAIVSFIITAVTISVFWIIQDSLVYKPTKVWRGNP
GSYGMPFFDDVSHCTMDGVEIIGWFIKQPPESFRSARTLIYFHGTDKNAS
FRLRKVVGLYEKCKCNILLLSYRGYGPSTGKPNERGVRIDAESAYEYLKS
RGDVDVGLGGNLWIYGESLGGAVAVYFSHKYQDCINALVLENTFTSLLDM
IKLEFPILGIFRYLSRNRWQSKKRIKNIAIPLLFLSGLKDGYIPPAMMRK
MHALATKSTLKEFVEFENGTHNRTWTAEGFYDSVARFMDRVDTEKGRELV
PKASQMQIFEGRSEEGGRFAATA*
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mRNA from alignment at tig00000168_pilon:81248..82669-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gchil3302.t1 ID=Gchil3302.t1|Name=Gchil3302.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1422bp|location=Sequence derived from alignment at tig00000168_pilon:81248..82669- (Gracilaria chilensis NLEC103_M9 male)
ATGCAGCGATCCACCTTCGCATATATACCATCTGCTTGCTTGCATCCGCG
CCTGCATCGGTCAACTTTTGTGACCCCCATTTCCCCGAAGCAGCAGCCAC
TTCGATCAGTTCGCGTTCTTCAACCATGCATGACCTCGGGCTCCAAGCCC
TCCTCCAAGCTAACTTCGCTGCCCCGATTAGCCGTCATTACGACTGCCAT
AAGCGCCGCACTATTACCTTTGGTCCCAATGCATGTTTACTCAGCTCCGC
TTTCCGTTGCGCAATCCTCTGAATCGATTTCGTCCTCAACCCGTGCCAGT
CATGCGCTTTCGGGTCGCGTAGTGCGGGTAAAGTACGCTCCGTCTGGCAT
GCTAGCGACTACCATTTCGAGACCGGCTCTTGCTACAGTTCAATCTCCCG
TTGTTACCAGGCTTTCTGCCAAGTCACATGTGCGTAAAATTATTCCGACG
ACCGCAGACACACTTCTTCACAAGCTTTTAAAACTTGCTTTGTTGGCTGC
TATCGTCAGCTTTATTATAACGGCTGTCACTATTTCTGTGTTTTGGATTA
TTCAAGATTCTCTTGTTTATAAACCCACAAAGGTATGGCGTGGAAACCCG
GGTTCTTATGGAATGCCCTTTTTCGACGATGTCAGTCACTGCACCATGGA
CGGAGTTGAAATTATTGGATGGTTCATCAAACAGCCCCCTGAGAGTTTTC
GCAGCGCGCGAACTCTGATATACTTTCATGGAACTGACAAGAATGCCAGC
TTCAGGCTGAGGAAGGTTGTCGGTTTGTACGAGAAGTGCAAATGTAACAT
TTTGCTGCTGTCTTACAGAGGCTATGGGCCATCCACCGGGAAACCGAACG
AGCGGGGAGTTCGAATCGATGCCGAAAGTGCGTATGAATATCTGAAGAGC
CGTGGAGATGTTGATGTTGGACTAGGGGGCAACTTGTGGATTTACGGAGA
ATCTCTGGGGGGCGCGGTTGCGGTTTATTTTTCCCACAAGTACCAGGACT
GCATAAATGCGCTTGTTTTGGAGAATACTTTCACAAGTCTTCTTGACATG
ATCAAGCTCGAGTTTCCGATATTGGGCATATTCAGATATCTCAGCAGAAA
TAGATGGCAAAGCAAGAAAAGGATCAAGAACATTGCTATTCCGTTACTAT
TTCTCAGCGGTCTAAAGGACGGCTATATCCCCCCAGCTATGATGAGGAAG
ATGCATGCGCTCGCAACTAAATCGACGTTGAAGGAATTTGTAGAATTTGA
AAACGGGACACATAATAGAACGTGGACAGCGGAAGGGTTTTATGACTCTG
TTGCAAGATTCATGGACAGAGTGGATACGGAGAAGGGGCGAGAACTTGTT
CCAAAAGCTTCACAGATGCAAATTTTTGAGGGAAGAAGTGAGGAGGGAGG
GCGCTTCGCTGCAACCGCATAA
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Coding sequence (CDS) from alignment at tig00000168_pilon:81248..82669-

>Gchil3302.t1 ID=Gchil3302.t1|Name=Gchil3302.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=1422bp|location=Sequence derived from alignment at tig00000168_pilon:81248..82669- (Gracilaria chilensis NLEC103_M9 male)
ATGCAGCGATCCACCTTCGCATATATACCATCTGCTTGCTTGCATCCGCG
CCTGCATCGGTCAACTTTTGTGACCCCCATTTCCCCGAAGCAGCAGCCAC
TTCGATCAGTTCGCGTTCTTCAACCATGCATGACCTCGGGCTCCAAGCCC
TCCTCCAAGCTAACTTCGCTGCCCCGATTAGCCGTCATTACGACTGCCAT
AAGCGCCGCACTATTACCTTTGGTCCCAATGCATGTTTACTCAGCTCCGC
TTTCCGTTGCGCAATCCTCTGAATCGATTTCGTCCTCAACCCGTGCCAGT
CATGCGCTTTCGGGTCGCGTAGTGCGGGTAAAGTACGCTCCGTCTGGCAT
GCTAGCGACTACCATTTCGAGACCGGCTCTTGCTACAGTTCAATCTCCCG
TTGTTACCAGGCTTTCTGCCAAGTCACATGTGCGTAAAATTATTCCGACG
ACCGCAGACACACTTCTTCACAAGCTTTTAAAACTTGCTTTGTTGGCTGC
TATCGTCAGCTTTATTATAACGGCTGTCACTATTTCTGTGTTTTGGATTA
TTCAAGATTCTCTTGTTTATAAACCCACAAAGGTATGGCGTGGAAACCCG
GGTTCTTATGGAATGCCCTTTTTCGACGATGTCAGTCACTGCACCATGGA
CGGAGTTGAAATTATTGGATGGTTCATCAAACAGCCCCCTGAGAGTTTTC
GCAGCGCGCGAACTCTGATATACTTTCATGGAACTGACAAGAATGCCAGC
TTCAGGCTGAGGAAGGTTGTCGGTTTGTACGAGAAGTGCAAATGTAACAT
TTTGCTGCTGTCTTACAGAGGCTATGGGCCATCCACCGGGAAACCGAACG
AGCGGGGAGTTCGAATCGATGCCGAAAGTGCGTATGAATATCTGAAGAGC
CGTGGAGATGTTGATGTTGGACTAGGGGGCAACTTGTGGATTTACGGAGA
ATCTCTGGGGGGCGCGGTTGCGGTTTATTTTTCCCACAAGTACCAGGACT
GCATAAATGCGCTTGTTTTGGAGAATACTTTCACAAGTCTTCTTGACATG
ATCAAGCTCGAGTTTCCGATATTGGGCATATTCAGATATCTCAGCAGAAA
TAGATGGCAAAGCAAGAAAAGGATCAAGAACATTGCTATTCCGTTACTAT
TTCTCAGCGGTCTAAAGGACGGCTATATCCCCCCAGCTATGATGAGGAAG
ATGCATGCGCTCGCAACTAAATCGACGTTGAAGGAATTTGTAGAATTTGA
AAACGGGACACATAATAGAACGTGGACAGCGGAAGGGTTTTATGACTCTG
TTGCAAGATTCATGGACAGAGTGGATACGGAGAAGGGGCGAGAACTTGTT
CCAAAAGCTTCACAGATGCAAATTTTTGAGGGAAGAAGTGAGGAGGGAGG
GCGCTTCGCTGCAACCGCATAA
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