Gchil7408.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGchil7408.t1
Unique NameGchil7408.t1
TypemRNA
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length541
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000007_piloncontigtig00000007_pilon:994735..996667 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog78898.MVEG_09761T0
PFAMsAAA
Max annot lvl4751|Fungi
Evalue1.85e-84
EggNOG OGsCOG0464@1|root,KOG0730@2759|Eukaryota,39TVA@33154|Opisthokonta,3NZXX@4751|Fungi,1GRZ6@112252|Fungi incertae sedis
DescriptionATPase family associated with various cellular activities (AAA)
COG categoryO
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil7408Gchil7408Gracilaria chilensis NLEC103_M9 malegenetig00000007_pilon 994735..996667 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil7408.t1Gchil7408.t1Gracilaria chilensis NLEC103_M9 malepolypeptidetig00000007_pilon 994735..996667 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil7408.t1.stop1Gchil7408.t1.stop1Gracilaria chilensis NLEC103_M9 malestop_codontig00000007_pilon 994735..994737 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil7408.t1.CDS1Gchil7408.t1.CDS1Gracilaria chilensis NLEC103_M9 maleCDStig00000007_pilon 994735..995620 -
Gchil7408.t1.CDS2Gchil7408.t1.CDS2Gracilaria chilensis NLEC103_M9 maleCDStig00000007_pilon 995717..996218 -
Gchil7408.t1.CDS3Gchil7408.t1.CDS3Gracilaria chilensis NLEC103_M9 maleCDStig00000007_pilon 996305..996365 -
Gchil7408.t1.CDS4Gchil7408.t1.CDS4Gracilaria chilensis NLEC103_M9 maleCDStig00000007_pilon 996494..996667 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil7408.t1.exon1Gchil7408.t1.exon1Gracilaria chilensis NLEC103_M9 maleexontig00000007_pilon 994735..995620 -
Gchil7408.t1.exon2Gchil7408.t1.exon2Gracilaria chilensis NLEC103_M9 maleexontig00000007_pilon 995717..996218 -
Gchil7408.t1.exon3Gchil7408.t1.exon3Gracilaria chilensis NLEC103_M9 maleexontig00000007_pilon 996305..996365 -
Gchil7408.t1.exon4Gchil7408.t1.exon4Gracilaria chilensis NLEC103_M9 maleexontig00000007_pilon 996494..996667 -


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil7408.t1.intron1Gchil7408.t1.intron1Gracilaria chilensis NLEC103_M9 maleintrontig00000007_pilon 995621..995716 -
Gchil7408.t1.intron2Gchil7408.t1.intron2Gracilaria chilensis NLEC103_M9 maleintrontig00000007_pilon 996219..996304 -
Gchil7408.t1.intron3Gchil7408.t1.intron3Gracilaria chilensis NLEC103_M9 maleintrontig00000007_pilon 996366..996493 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil7408.t1.start1Gchil7408.t1.start1Gracilaria chilensis NLEC103_M9 malestart_codontig00000007_pilon 996665..996667 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gchil7408.t1 ID=Gchil7408.t1|Name=Gchil7408.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=541bp
MFDTVGFLRSQLPGKLFQVKSVERVDNPVLRQNVSKHAVRLRKRAEQGEK
PCIRTVANTRVMLSVRTSCAIVFQHISCKAPRSLLLSGPSDVGKSFGVRA
AIRQARIRLLEVTPFDGSDRLKHILDHAPRIARCKKTKVVVFLDDIDGLC
PVPIHKAQENYMDSNTAMLLSALKPLPMEYERFSSVYFIAATNRPHMVHP
QILSSSCFHKHLQLELSVSLKTDISHSGSLIEYNSSIATTGFNNTCHNTV
SLSSSLQFEKSKQKSTQAKNLKTSWADIGGMAGIKLRLQMAVEWPLLYPS
TFIRLGLNAPRGILLHGPPGCSKTSLVKAAARSSGASFFGLSGADIFSCY
LGEAERILREAFSNARRVKPSIIFLDEIDAIVGKRSPGGQVDGNRVQERV
LSTLLTEMDGILSAEGVLVVGASNRIDLLDDALLRPGRFDDILEVPLPNE
KERVEILRIHTNSILLDKDVDLAELASMTKGLSGADLKRMCINAGLESLR
EKYQNGSKESKESFHMDFGKKPETKVSTKHFLLNSNTRYY*
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spliced messenger RNA

>Gchil7408.t1 ID=Gchil7408.t1|Name=Gchil7408.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1623bp|location=Sequence derived from alignment at tig00000007_pilon:994735..996667- (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGTTTGACACGGTCGGCTTCTTACGGTCTCAATTGCCCGGAAAGCTTTT
TCAGGTCAAATCCGTGGAAAGGGTTGATAACCCCGTTCTGAGGCAAAACG
TTTCAAAGCACGCCGTTCGTTTACGAAAACGCGCTGAGCAGGGTGAAAAA
CCCTGTATCCGGACAGTCGCCAATACACGGGTAATGCTTTCTGTCAGGAC
TTCTTGTGCCATAGTTTTCCAACACATATCATGCAAGGCGCCTCGTTCTT
TGTTGCTTAGTGGTCCGTCAGATGTTGGAAAGTCTTTTGGTGTGCGCGCT
GCTATTCGCCAAGCCCGAATCCGGCTTCTCGAGGTGACACCATTCGATGG
TTCTGATCGTCTTAAGCACATTTTGGACCATGCGCCACGAATTGCTCGCT
GTAAGAAGACGAAAGTTGTCGTTTTCCTCGATGATATTGATGGACTATGT
CCTGTACCCATACATAAGGCACAAGAGAACTACATGGATTCCAACACGGC
TATGCTGTTATCTGCGTTAAAACCACTTCCTATGGAATACGAACGATTTT
CTTCTGTCTACTTCATTGCAGCAACCAACCGTCCACATATGGTCCATCCC
CAAATTCTTTCTTCGTCTTGCTTTCATAAACACCTCCAACTGGAACTTTC
AGTATCTCTCAAAACAGATATTTCGCACTCTGGTTCGCTCATAGAATACA
ACTCCAGTATAGCCACTACTGGTTTTAATAATACGTGTCACAATACCGTG
TCTCTGAGTTCATCATTACAATTTGAGAAATCAAAACAAAAATCGACTCA
AGCAAAGAATTTGAAAACCTCATGGGCTGATATTGGTGGCATGGCAGGTA
TAAAACTTAGACTGCAAATGGCAGTTGAATGGCCTCTTCTGTATCCGTCA
ACATTTATTCGTCTTGGTTTAAATGCACCTCGCGGCATTCTGCTACATGG
CCCTCCGGGATGTAGTAAAACATCTTTGGTCAAAGCCGCTGCTAGGAGCA
GCGGTGCATCATTTTTTGGACTTAGTGGTGCAGACATATTCTCGTGCTAC
CTAGGGGAGGCAGAGCGCATATTACGTGAGGCATTTTCAAATGCAAGAAG
GGTCAAGCCAAGCATTATTTTCTTAGACGAGATTGACGCTATTGTCGGGA
AACGATCGCCAGGCGGTCAAGTTGATGGCAACAGAGTTCAAGAACGCGTA
CTGAGCACCTTACTAACAGAAATGGACGGTATTTTATCCGCAGAAGGAGT
GCTAGTAGTTGGGGCATCAAATCGAATCGACCTTTTGGACGATGCATTAC
TAAGGCCTGGTAGATTTGATGACATTCTTGAAGTTCCTTTGCCCAATGAA
AAGGAAAGAGTGGAAATACTGCGCATACATACCAACTCCATTTTGTTGGA
TAAGGATGTTGACCTAGCTGAACTGGCTAGCATGACAAAAGGCCTAAGTG
GTGCAGATTTGAAGCGCATGTGTATCAATGCCGGGTTAGAATCTTTGAGA
GAAAAGTATCAAAATGGAAGCAAGGAATCCAAAGAAAGTTTTCATATGGA
TTTCGGGAAGAAACCCGAAACCAAGGTGAGTACGAAGCACTTCTTGCTGA
ACTCAAACACCAGATATTATTAG
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protein sequence of Gchil7408.t1

>Gchil7408.t1 ID=Gchil7408.t1|Name=Gchil7408.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=541bp
MFDTVGFLRSQLPGKLFQVKSVERVDNPVLRQNVSKHAVRLRKRAEQGEK
PCIRTVANTRVMLSVRTSCAIVFQHISCKAPRSLLLSGPSDVGKSFGVRA
AIRQARIRLLEVTPFDGSDRLKHILDHAPRIARCKKTKVVVFLDDIDGLC
PVPIHKAQENYMDSNTAMLLSALKPLPMEYERFSSVYFIAATNRPHMVHP
QILSSSCFHKHLQLELSVSLKTDISHSGSLIEYNSSIATTGFNNTCHNTV
SLSSSLQFEKSKQKSTQAKNLKTSWADIGGMAGIKLRLQMAVEWPLLYPS
TFIRLGLNAPRGILLHGPPGCSKTSLVKAAARSSGASFFGLSGADIFSCY
LGEAERILREAFSNARRVKPSIIFLDEIDAIVGKRSPGGQVDGNRVQERV
LSTLLTEMDGILSAEGVLVVGASNRIDLLDDALLRPGRFDDILEVPLPNE
KERVEILRIHTNSILLDKDVDLAELASMTKGLSGADLKRMCINAGLESLR
EKYQNGSKESKESFHMDFGKKPETKVSTKHFLLNSNTRYY*
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mRNA from alignment at tig00000007_pilon:994735..996667-

Legend: polypeptideCDSexonstart_codonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gchil7408.t1 ID=Gchil7408.t1|Name=Gchil7408.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1933bp|location=Sequence derived from alignment at tig00000007_pilon:994735..996667- (Gracilaria chilensis NLEC103_M9 male)
ATGTTTGACACGGTCGGCTTCTTACGGTCTCAATTGCCCGGAAAGCTTTT
TCAGGTCAAATCCGTGGAAAGGGTTGATAACCCCGTTCTGAGGCAAAACG
TTTCAAAGCACGCCGTTCGTTTACGAAAACGCGCTGAGCAGGGTGAAAAA
CCCTGTATCCGGACAGTCGCCAATGTACGTCTTTTTGTAGGGATATTAGG
GAACGCAAGGTAATGATGGAGAATTCCATGCCGAGCTTACATTTGTAGGG
ACAGCCAAGAGATCTAAACTTCGCTTACTAAGACATATCAAAATTCGTTT
AGACACGGGTAATGCTTTCTGTCAGGACTTCTTGTGCCATAGTTTTCCAA
CACATATCATGCAGTCCAAATCACAGACTTGTGAAGAAGATATCGTTCTT
ACTGACTCTCTTCTAGCTGTAAGGTCACTTCTACATCCGAGATGTCAAGA
GGCGCCTCGTTCTTTGTTGCTTAGTGGTCCGTCAGATGTTGGAAAGTCTT
TTGGTGTGCGCGCTGCTATTCGCCAAGCCCGAATCCGGCTTCTCGAGGTG
ACACCATTCGATGGTTCTGATCGTCTTAAGCACATTTTGGACCATGCGCC
ACGAATTGCTCGCTGTAAGAAGACGAAAGTTGTCGTTTTCCTCGATGATA
TTGATGGACTATGTCCTGTACCCATACATAAGGCACAAGAGAACTACATG
GATTCCAACACGGCTATGCTGTTATCTGCGTTAAAACCACTTCCTATGGA
ATACGAACGATTTTCTTCTGTCTACTTCATTGCAGCAACCAACCGTCCAC
ATATGGTCCATCCCCAAATTCTTTCTTCGTCTTGCTTTCATAAACACCTC
CAACTGGAACTTTCAGTATCTCTCAAAACAGATATTTCGCACTCTGGTTC
GCTCATAGAATACAACTCCAGTATAGCCACTACTGGTTTTAATAATACGT
GGTATGTTGCTCCCAACGTTATAATGGGTGTGGAAGTCGTAGAACAAAAC
TAACTTTGGGAAACTTGGTATACTCGTCCATCATATTGATACAACAGTCA
CAATACCGTGTCTCTGAGTTCATCATTACAATTTGAGAAATCAAAACAAA
AATCGACTCAAGCAAAGAATTTGAAAACCTCATGGGCTGATATTGGTGGC
ATGGCAGGTATAAAACTTAGACTGCAAATGGCAGTTGAATGGCCTCTTCT
GTATCCGTCAACATTTATTCGTCTTGGTTTAAATGCACCTCGCGGCATTC
TGCTACATGGCCCTCCGGGATGTAGTAAAACATCTTTGGTCAAAGCCGCT
GCTAGGAGCAGCGGTGCATCATTTTTTGGACTTAGTGGTGCAGACATATT
CTCGTGCTACCTAGGGGAGGCAGAGCGCATATTACGTGAGGCATTTTCAA
ATGCAAGAAGGGTCAAGCCAAGCATTATTTTCTTAGACGAGATTGACGCT
ATTGTCGGGAAACGATCGCCAGGCGGTCAAGTTGATGGCAACAGAGTTCA
AGAACGCGTACTGAGCACCTTACTAACAGAAATGGACGGTATTTTATCCG
CAGAAGGAGTGCTAGTAGTTGGGGCATCAAATCGAATCGACCTTTTGGAC
GATGCATTACTAAGGCCTGGTAGATTTGATGACATTCTTGAAGTTCCTTT
GCCCAATGAAAAGGAAAGAGTGGAAATACTGCGCATACATACCAACTCCA
TTTTGTTGGATAAGGATGTTGACCTAGCTGAACTGGCTAGCATGACAAAA
GGCCTAAGTGGTGCAGATTTGAAGCGCATGTGTATCAATGCCGGGTTAGA
ATCTTTGAGAGAAAAGTATCAAAATGGAAGCAAGGAATCCAAAGAAAGTT
TTCATATGGATTTCGGGAAGAAACCCGAAACCAAGGTGAGTACGAAGCAC
TTCTTGCTGAACTCAAACACCAGATATTATTAG
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Coding sequence (CDS) from alignment at tig00000007_pilon:994735..996667-

>Gchil7408.t1 ID=Gchil7408.t1|Name=Gchil7408.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=1623bp|location=Sequence derived from alignment at tig00000007_pilon:994735..996667- (Gracilaria chilensis NLEC103_M9 male)
ATGTTTGACACGGTCGGCTTCTTACGGTCTCAATTGCCCGGAAAGCTTTT
TCAGGTCAAATCCGTGGAAAGGGTTGATAACCCCGTTCTGAGGCAAAACG
TTTCAAAGCACGCCGTTCGTTTACGAAAACGCGCTGAGCAGGGTGAAAAA
CCCTGTATCCGGACAGTCGCCAATACACGGGTAATGCTTTCTGTCAGGAC
TTCTTGTGCCATAGTTTTCCAACACATATCATGCAAGGCGCCTCGTTCTT
TGTTGCTTAGTGGTCCGTCAGATGTTGGAAAGTCTTTTGGTGTGCGCGCT
GCTATTCGCCAAGCCCGAATCCGGCTTCTCGAGGTGACACCATTCGATGG
TTCTGATCGTCTTAAGCACATTTTGGACCATGCGCCACGAATTGCTCGCT
GTAAGAAGACGAAAGTTGTCGTTTTCCTCGATGATATTGATGGACTATGT
CCTGTACCCATACATAAGGCACAAGAGAACTACATGGATTCCAACACGGC
TATGCTGTTATCTGCGTTAAAACCACTTCCTATGGAATACGAACGATTTT
CTTCTGTCTACTTCATTGCAGCAACCAACCGTCCACATATGGTCCATCCC
CAAATTCTTTCTTCGTCTTGCTTTCATAAACACCTCCAACTGGAACTTTC
AGTATCTCTCAAAACAGATATTTCGCACTCTGGTTCGCTCATAGAATACA
ACTCCAGTATAGCCACTACTGGTTTTAATAATACGTGTCACAATACCGTG
TCTCTGAGTTCATCATTACAATTTGAGAAATCAAAACAAAAATCGACTCA
AGCAAAGAATTTGAAAACCTCATGGGCTGATATTGGTGGCATGGCAGGTA
TAAAACTTAGACTGCAAATGGCAGTTGAATGGCCTCTTCTGTATCCGTCA
ACATTTATTCGTCTTGGTTTAAATGCACCTCGCGGCATTCTGCTACATGG
CCCTCCGGGATGTAGTAAAACATCTTTGGTCAAAGCCGCTGCTAGGAGCA
GCGGTGCATCATTTTTTGGACTTAGTGGTGCAGACATATTCTCGTGCTAC
CTAGGGGAGGCAGAGCGCATATTACGTGAGGCATTTTCAAATGCAAGAAG
GGTCAAGCCAAGCATTATTTTCTTAGACGAGATTGACGCTATTGTCGGGA
AACGATCGCCAGGCGGTCAAGTTGATGGCAACAGAGTTCAAGAACGCGTA
CTGAGCACCTTACTAACAGAAATGGACGGTATTTTATCCGCAGAAGGAGT
GCTAGTAGTTGGGGCATCAAATCGAATCGACCTTTTGGACGATGCATTAC
TAAGGCCTGGTAGATTTGATGACATTCTTGAAGTTCCTTTGCCCAATGAA
AAGGAAAGAGTGGAAATACTGCGCATACATACCAACTCCATTTTGTTGGA
TAAGGATGTTGACCTAGCTGAACTGGCTAGCATGACAAAAGGCCTAAGTG
GTGCAGATTTGAAGCGCATGTGTATCAATGCCGGGTTAGAATCTTTGAGA
GAAAAGTATCAAAATGGAAGCAAGGAATCCAAAGAAAGTTTTCATATGGA
TTTCGGGAAGAAACCCGAAACCAAGGTGAGTACGAAGCACTTCTTGCTGA
ACTCAAACACCAGATATTATTAG
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