Gchil3355.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGchil3355.t1
Unique NameGchil3355.t1
TypemRNA
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length303
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000168_piloncontigtig00000168_pilon:405768..406676 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil3355Gchil3355Gracilaria chilensis NLEC103_M9 malegenetig00000168_pilon 405768..406676 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil3355.t1.start1Gchil3355.t1.start1Gracilaria chilensis NLEC103_M9 malestart_codontig00000168_pilon 405768..405770 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil3355.t1.CDS1Gchil3355.t1.CDS1Gracilaria chilensis NLEC103_M9 maleCDStig00000168_pilon 405768..406676 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil3355.t1.exon1Gchil3355.t1.exon1Gracilaria chilensis NLEC103_M9 maleexontig00000168_pilon 405768..406676 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil3355.t1.stop1Gchil3355.t1.stop1Gracilaria chilensis NLEC103_M9 malestop_codontig00000168_pilon 406674..406676 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil3355.t1Gchil3355.t1Gracilaria chilensis NLEC103_M9 malepolypeptidetig00000168_pilon 405768..406676 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gchil3355.t1 ID=Gchil3355.t1|Name=Gchil3355.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=303bp
MSSSPAWLSVALSTLATVKEQPDEVLRTGIRKLPQSHILHHLNRWARHVW
RPAISSEQLQVLTENPQPTSVEHLNAGAASLLAALLEAVRRCKAEPWLQV
IGVMFLADDPWAIDVGHDKQLQVNKCVRAIEALFANSNAVESIASALNSE
TVELPVDGEFAATHDESYAELRCRVAALQLQLDDVTAVVRRNEQNTKDML
SSFHFWSLLLLDELRSYRLAVRSPLNTPTQSQASAELSSGLPLMRSLSPA
WRIGTDLSEQGARGSSPVNSVSAVSPYASVPTAQSEAIRPKRVFRDGKWT
TL*
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spliced messenger RNA

>Gchil3355.t1 ID=Gchil3355.t1|Name=Gchil3355.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=909bp|location=Sequence derived from alignment at tig00000168_pilon:405768..406676+ (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGTCATCCTCTCCGGCATGGCTATCCGTAGCACTCTCAACATTAGCTAC
AGTGAAGGAACAACCGGACGAAGTGTTACGCACGGGGATTAGAAAGCTCC
CACAATCGCACATTCTTCACCACCTCAACCGCTGGGCACGTCATGTATGG
CGCCCTGCAATCTCATCAGAGCAACTTCAAGTACTAACGGAGAATCCGCA
ACCCACTTCCGTTGAGCATCTCAACGCCGGGGCGGCATCGCTGCTCGCGG
CGCTTCTTGAGGCTGTGCGACGCTGCAAAGCGGAACCCTGGCTGCAAGTG
ATCGGGGTGATGTTCCTTGCAGACGACCCGTGGGCCATAGATGTCGGCCA
CGACAAACAATTGCAAGTGAACAAATGCGTTCGTGCCATTGAGGCTTTGT
TTGCCAACTCTAACGCAGTCGAAAGCATCGCATCAGCCTTAAATTCAGAA
ACGGTAGAATTACCGGTTGATGGAGAGTTCGCGGCCACTCATGACGAATC
GTACGCTGAACTGCGATGTCGCGTAGCAGCTCTTCAACTGCAATTGGATG
ACGTCACAGCTGTTGTGCGACGAAATGAACAAAACACAAAAGACATGTTA
AGTTCTTTTCACTTTTGGTCACTGCTTTTGCTCGATGAGTTGCGAAGCTA
CAGGTTGGCTGTTAGATCTCCCTTGAACACTCCCACACAATCTCAAGCTT
CCGCTGAATTGAGCTCTGGATTGCCACTCATGAGATCGCTATCACCTGCG
TGGAGAATCGGAACTGATCTGAGCGAACAAGGTGCAAGGGGCAGTTCCCC
CGTCAATAGCGTGTCCGCGGTTTCGCCCTACGCCTCTGTGCCCACGGCGC
AGTCAGAAGCTATTCGACCAAAGCGGGTATTTCGTGATGGAAAGTGGACC
ACGCTGTGA
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protein sequence of Gchil3355.t1

>Gchil3355.t1 ID=Gchil3355.t1|Name=Gchil3355.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=303bp
MSSSPAWLSVALSTLATVKEQPDEVLRTGIRKLPQSHILHHLNRWARHVW
RPAISSEQLQVLTENPQPTSVEHLNAGAASLLAALLEAVRRCKAEPWLQV
IGVMFLADDPWAIDVGHDKQLQVNKCVRAIEALFANSNAVESIASALNSE
TVELPVDGEFAATHDESYAELRCRVAALQLQLDDVTAVVRRNEQNTKDML
SSFHFWSLLLLDELRSYRLAVRSPLNTPTQSQASAELSSGLPLMRSLSPA
WRIGTDLSEQGARGSSPVNSVSAVSPYASVPTAQSEAIRPKRVFRDGKWT
TL*
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mRNA from alignment at tig00000168_pilon:405768..406676+

Legend: start_codonpolypeptideCDSexonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gchil3355.t1 ID=Gchil3355.t1|Name=Gchil3355.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=909bp|location=Sequence derived from alignment at tig00000168_pilon:405768..406676+ (Gracilaria chilensis NLEC103_M9 male)
ATGTCATCCTCTCCGGCATGGCTATCCGTAGCACTCTCAACATTAGCTAC
AGTGAAGGAACAACCGGACGAAGTGTTACGCACGGGGATTAGAAAGCTCC
CACAATCGCACATTCTTCACCACCTCAACCGCTGGGCACGTCATGTATGG
CGCCCTGCAATCTCATCAGAGCAACTTCAAGTACTAACGGAGAATCCGCA
ACCCACTTCCGTTGAGCATCTCAACGCCGGGGCGGCATCGCTGCTCGCGG
CGCTTCTTGAGGCTGTGCGACGCTGCAAAGCGGAACCCTGGCTGCAAGTG
ATCGGGGTGATGTTCCTTGCAGACGACCCGTGGGCCATAGATGTCGGCCA
CGACAAACAATTGCAAGTGAACAAATGCGTTCGTGCCATTGAGGCTTTGT
TTGCCAACTCTAACGCAGTCGAAAGCATCGCATCAGCCTTAAATTCAGAA
ACGGTAGAATTACCGGTTGATGGAGAGTTCGCGGCCACTCATGACGAATC
GTACGCTGAACTGCGATGTCGCGTAGCAGCTCTTCAACTGCAATTGGATG
ACGTCACAGCTGTTGTGCGACGAAATGAACAAAACACAAAAGACATGTTA
AGTTCTTTTCACTTTTGGTCACTGCTTTTGCTCGATGAGTTGCGAAGCTA
CAGGTTGGCTGTTAGATCTCCCTTGAACACTCCCACACAATCTCAAGCTT
CCGCTGAATTGAGCTCTGGATTGCCACTCATGAGATCGCTATCACCTGCG
TGGAGAATCGGAACTGATCTGAGCGAACAAGGTGCAAGGGGCAGTTCCCC
CGTCAATAGCGTGTCCGCGGTTTCGCCCTACGCCTCTGTGCCCACGGCGC
AGTCAGAAGCTATTCGACCAAAGCGGGTATTTCGTGATGGAAAGTGGACC
ACGCTGTGA
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Coding sequence (CDS) from alignment at tig00000168_pilon:405768..406676+

>Gchil3355.t1 ID=Gchil3355.t1|Name=Gchil3355.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=909bp|location=Sequence derived from alignment at tig00000168_pilon:405768..406676+ (Gracilaria chilensis NLEC103_M9 male)
ATGTCATCCTCTCCGGCATGGCTATCCGTAGCACTCTCAACATTAGCTAC
AGTGAAGGAACAACCGGACGAAGTGTTACGCACGGGGATTAGAAAGCTCC
CACAATCGCACATTCTTCACCACCTCAACCGCTGGGCACGTCATGTATGG
CGCCCTGCAATCTCATCAGAGCAACTTCAAGTACTAACGGAGAATCCGCA
ACCCACTTCCGTTGAGCATCTCAACGCCGGGGCGGCATCGCTGCTCGCGG
CGCTTCTTGAGGCTGTGCGACGCTGCAAAGCGGAACCCTGGCTGCAAGTG
ATCGGGGTGATGTTCCTTGCAGACGACCCGTGGGCCATAGATGTCGGCCA
CGACAAACAATTGCAAGTGAACAAATGCGTTCGTGCCATTGAGGCTTTGT
TTGCCAACTCTAACGCAGTCGAAAGCATCGCATCAGCCTTAAATTCAGAA
ACGGTAGAATTACCGGTTGATGGAGAGTTCGCGGCCACTCATGACGAATC
GTACGCTGAACTGCGATGTCGCGTAGCAGCTCTTCAACTGCAATTGGATG
ACGTCACAGCTGTTGTGCGACGAAATGAACAAAACACAAAAGACATGTTA
AGTTCTTTTCACTTTTGGTCACTGCTTTTGCTCGATGAGTTGCGAAGCTA
CAGGTTGGCTGTTAGATCTCCCTTGAACACTCCCACACAATCTCAAGCTT
CCGCTGAATTGAGCTCTGGATTGCCACTCATGAGATCGCTATCACCTGCG
TGGAGAATCGGAACTGATCTGAGCGAACAAGGTGCAAGGGGCAGTTCCCC
CGTCAATAGCGTGTCCGCGGTTTCGCCCTACGCCTCTGTGCCCACGGCGC
AGTCAGAAGCTATTCGACCAAAGCGGGTATTTCGTGATGGAAAGTGGACC
ACGCTGTGA
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