Gchil7553.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gchil7553.t1
Unique Name	Gchil7553.t1
Type	mRNA
Organism	Gracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length	436

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
tig00000007_pilon	contig	tig00000007_pilon:1874550..1875857 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria chilensis NLEC103_M9 male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	3885.XP_007150258.1
Max annot lvl	35493\|Streptophyta
KEGG ko	ko:K11671
GOs	GO:0000228,GO:0000785,GO:0000790,GO:0002020,GO:0003674,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005694,GO:0019899,GO:0031011,GO:0031974,GO:0031981,GO:0032991,GO:0033202,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0044422,GO:0044424,GO:0044427,GO:0044428,GO:0044446,GO:0044454,GO:0044464,GO:0070013,GO:0070603,GO:0097346,GO:1902494,GO:1904949
Evalue	3.97e-40
EggNOG OGs	KOG1927@1\|root,KOG1927@2759\|Eukaryota,37KKC@33090\|Viridiplantae,3GGQX@35493\|Streptophyta,4JJK6@91835\|fabids
Description	protease binding
COG category	K
BRITE	ko00000,ko03036

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gchil7553	Gchil7553	Gracilaria chilensis NLEC103_M9 male	gene	tig00000007_pilon 1874550..1875857 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil7553.t1.start1	Gchil7553.t1.start1	Gracilaria chilensis NLEC103_M9 male	start_codon	tig00000007_pilon 1874550..1874552 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil7553.t1.CDS1	Gchil7553.t1.CDS1	Gracilaria chilensis NLEC103_M9 male	CDS	tig00000007_pilon 1874550..1875857 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil7553.t1.exon1	Gchil7553.t1.exon1	Gracilaria chilensis NLEC103_M9 male	exon	tig00000007_pilon 1874550..1875857 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil7553.t1.stop1	Gchil7553.t1.stop1	Gracilaria chilensis NLEC103_M9 male	stop_codon	tig00000007_pilon 1875855..1875857 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil7553.t1	Gchil7553.t1	Gracilaria chilensis NLEC103_M9 male	polypeptide	tig00000007_pilon 1874550..1875857 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at tig00000007_pilon:1874550..1875857+
coding sequence from alignment at tig00000007_pilon:1874550..1875857+

mRNA sequence

>Gchil7553.t1 ID=Gchil7553.t1|Name=Gchil7553.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=436bp
MPFRGRRRGGRGGRPRSEYSVREATVRSLDMFGLSATPVLPTAGRPPVLK
RKPKKKLPGKRKADEEEVVVSSGEEYTRNLLETYIGQIGACCALGMKAGD
VINIQSWEKFSEEERESLRQHLPRHLTDEEKEQTARMLVSGADMYFGAPR
ERCFDAVAAGLSHPRVKRWRLRVTLIERRHHIMAMREYQNRSIRRLLARK
ACLKHSGDAMAGLAAVGGNLTRTGGALQALPSRIQATAEAAARSSIMKEW
DAPRWHRVLDFRNQETQRYMVPEKAFRYRNPWGFSIVGPLKRGPAIDGGR
PREHILLRNERPSHVTILCIVRDAASRLPNNRGTRADICDLLRDSQYVRE
GATFQQLNTVVSGALDRLHYEENAPVRYDGETKEWCYLHNDMNEEDFERP
AWARETSQKQGAAVENTAMAVARNKPRKKKKRKVA*

spliced messenger RNA

>Gchil7553.t1 ID=Gchil7553.t1|Name=Gchil7553.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1308bp|location=Sequence derived from alignment at tig00000007_pilon:1874550..1875857+ (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCCTTTCCGTGGTAGAAGGCGCGGCGGGCGCGGCGGAAGGCCGCGTTC
CGAATACAGTGTTCGCGAGGCCACTGTGAGAAGCCTTGATATGTTCGGCT
TGTCCGCCACACCTGTGCTCCCTACTGCTGGAAGACCCCCCGTCTTGAAG
AGAAAACCAAAAAAAAAGTTGCCTGGAAAACGCAAAGCAGATGAAGAAGA
GGTGGTTGTCAGTTCAGGGGAAGAGTATACACGCAATTTGCTTGAAACCT
ACATTGGACAAATTGGTGCCTGTTGTGCGCTTGGAATGAAAGCAGGCGAT
GTCATCAACATCCAATCGTGGGAAAAGTTCTCCGAGGAAGAACGAGAGTC
TTTGCGTCAGCATCTGCCTCGACATTTGACAGACGAGGAGAAGGAACAAA
CTGCGAGAATGCTTGTGTCTGGCGCTGATATGTACTTTGGAGCACCCCGC
GAGAGATGTTTTGACGCAGTTGCTGCTGGTCTTTCACACCCGCGAGTGAA
GCGATGGCGATTAAGAGTTACACTAATTGAAAGACGCCATCACATTATGG
CTATGCGAGAGTATCAGAATAGGTCAATTAGACGATTGTTAGCTCGAAAG
GCCTGTCTTAAACATTCTGGTGACGCCATGGCAGGACTGGCTGCAGTAGG
TGGTAATCTCACGAGAACAGGTGGCGCTTTGCAAGCTTTGCCGAGTAGAA
TTCAGGCCACTGCCGAAGCTGCAGCGCGATCGAGCATTATGAAGGAGTGG
GATGCCCCGCGTTGGCATAGGGTGCTTGATTTCCGTAATCAGGAGACACA
GCGCTACATGGTACCAGAAAAGGCTTTTAGGTACCGCAACCCTTGGGGTT
TCTCGATAGTTGGACCATTGAAGCGAGGCCCTGCTATTGACGGAGGTCGA
CCCCGTGAGCACATTTTGCTCCGGAATGAACGCCCAAGTCACGTTACGAT
TCTTTGCATTGTGCGGGATGCTGCGAGTAGGCTTCCTAACAACCGAGGGA
CAAGAGCGGATATTTGCGATCTGTTGAGGGATAGTCAATACGTAAGAGAG
GGTGCCACATTTCAGCAACTGAACACTGTTGTGTCTGGAGCGCTTGACCG
CCTGCATTATGAAGAAAATGCTCCTGTTCGGTATGATGGAGAGACCAAAG
AGTGGTGTTATTTGCACAATGACATGAATGAAGAAGACTTTGAAAGGCCA
GCGTGGGCGCGCGAGACTTCACAGAAACAAGGAGCAGCGGTCGAGAATAC
GGCCATGGCGGTTGCGAGAAACAAGCCAAGGAAGAAGAAAAAAAGGAAAG
TCGCATGA

protein sequence of Gchil7553.t1

>Gchil7553.t1 ID=Gchil7553.t1|Name=Gchil7553.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=436bp
MPFRGRRRGGRGGRPRSEYSVREATVRSLDMFGLSATPVLPTAGRPPVLK
RKPKKKLPGKRKADEEEVVVSSGEEYTRNLLETYIGQIGACCALGMKAGD
VINIQSWEKFSEEERESLRQHLPRHLTDEEKEQTARMLVSGADMYFGAPR
ERCFDAVAAGLSHPRVKRWRLRVTLIERRHHIMAMREYQNRSIRRLLARK
ACLKHSGDAMAGLAAVGGNLTRTGGALQALPSRIQATAEAAARSSIMKEW
DAPRWHRVLDFRNQETQRYMVPEKAFRYRNPWGFSIVGPLKRGPAIDGGR
PREHILLRNERPSHVTILCIVRDAASRLPNNRGTRADICDLLRDSQYVRE
GATFQQLNTVVSGALDRLHYEENAPVRYDGETKEWCYLHNDMNEEDFERP
AWARETSQKQGAAVENTAMAVARNKPRKKKKRKVA*

mRNA from alignment at tig00000007_pilon:1874550..1875857+

Legend: start_codonpolypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gchil7553.t1 ID=Gchil7553.t1|Name=Gchil7553.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1308bp|location=Sequence derived from alignment at tig00000007_pilon:1874550..1875857+ (Gracilaria chilensis NLEC103_M9 male)
ATGCCTTTCCGTGGTAGAAGGCGCGGCGGGCGCGGCGGAAGGCCGCGTTC
CGAATACAGTGTTCGCGAGGCCACTGTGAGAAGCCTTGATATGTTCGGCT
TGTCCGCCACACCTGTGCTCCCTACTGCTGGAAGACCCCCCGTCTTGAAG
AGAAAACCAAAAAAAAAGTTGCCTGGAAAACGCAAAGCAGATGAAGAAGA
GGTGGTTGTCAGTTCAGGGGAAGAGTATACACGCAATTTGCTTGAAACCT
ACATTGGACAAATTGGTGCCTGTTGTGCGCTTGGAATGAAAGCAGGCGAT
GTCATCAACATCCAATCGTGGGAAAAGTTCTCCGAGGAAGAACGAGAGTC
TTTGCGTCAGCATCTGCCTCGACATTTGACAGACGAGGAGAAGGAACAAA
CTGCGAGAATGCTTGTGTCTGGCGCTGATATGTACTTTGGAGCACCCCGC
GAGAGATGTTTTGACGCAGTTGCTGCTGGTCTTTCACACCCGCGAGTGAA
GCGATGGCGATTAAGAGTTACACTAATTGAAAGACGCCATCACATTATGG
CTATGCGAGAGTATCAGAATAGGTCAATTAGACGATTGTTAGCTCGAAAG
GCCTGTCTTAAACATTCTGGTGACGCCATGGCAGGACTGGCTGCAGTAGG
TGGTAATCTCACGAGAACAGGTGGCGCTTTGCAAGCTTTGCCGAGTAGAA
TTCAGGCCACTGCCGAAGCTGCAGCGCGATCGAGCATTATGAAGGAGTGG
GATGCCCCGCGTTGGCATAGGGTGCTTGATTTCCGTAATCAGGAGACACA
GCGCTACATGGTACCAGAAAAGGCTTTTAGGTACCGCAACCCTTGGGGTT
TCTCGATAGTTGGACCATTGAAGCGAGGCCCTGCTATTGACGGAGGTCGA
CCCCGTGAGCACATTTTGCTCCGGAATGAACGCCCAAGTCACGTTACGAT
TCTTTGCATTGTGCGGGATGCTGCGAGTAGGCTTCCTAACAACCGAGGGA
CAAGAGCGGATATTTGCGATCTGTTGAGGGATAGTCAATACGTAAGAGAG
GGTGCCACATTTCAGCAACTGAACACTGTTGTGTCTGGAGCGCTTGACCG
CCTGCATTATGAAGAAAATGCTCCTGTTCGGTATGATGGAGAGACCAAAG
AGTGGTGTTATTTGCACAATGACATGAATGAAGAAGACTTTGAAAGGCCA
GCGTGGGCGCGCGAGACTTCACAGAAACAAGGAGCAGCGGTCGAGAATAC
GGCCATGGCGGTTGCGAGAAACAAGCCAAGGAAGAAGAAAAAAAGGAAAG
TCGCATGA

Coding sequence (CDS) from alignment at tig00000007_pilon:1874550..1875857+

>Gchil7553.t1 ID=Gchil7553.t1|Name=Gchil7553.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=1308bp|location=Sequence derived from alignment at tig00000007_pilon:1874550..1875857+ (Gracilaria chilensis NLEC103_M9 male)
ATGCCTTTCCGTGGTAGAAGGCGCGGCGGGCGCGGCGGAAGGCCGCGTTC
CGAATACAGTGTTCGCGAGGCCACTGTGAGAAGCCTTGATATGTTCGGCT
TGTCCGCCACACCTGTGCTCCCTACTGCTGGAAGACCCCCCGTCTTGAAG
AGAAAACCAAAAAAAAAGTTGCCTGGAAAACGCAAAGCAGATGAAGAAGA
GGTGGTTGTCAGTTCAGGGGAAGAGTATACACGCAATTTGCTTGAAACCT
ACATTGGACAAATTGGTGCCTGTTGTGCGCTTGGAATGAAAGCAGGCGAT
GTCATCAACATCCAATCGTGGGAAAAGTTCTCCGAGGAAGAACGAGAGTC
TTTGCGTCAGCATCTGCCTCGACATTTGACAGACGAGGAGAAGGAACAAA
CTGCGAGAATGCTTGTGTCTGGCGCTGATATGTACTTTGGAGCACCCCGC
GAGAGATGTTTTGACGCAGTTGCTGCTGGTCTTTCACACCCGCGAGTGAA
GCGATGGCGATTAAGAGTTACACTAATTGAAAGACGCCATCACATTATGG
CTATGCGAGAGTATCAGAATAGGTCAATTAGACGATTGTTAGCTCGAAAG
GCCTGTCTTAAACATTCTGGTGACGCCATGGCAGGACTGGCTGCAGTAGG
TGGTAATCTCACGAGAACAGGTGGCGCTTTGCAAGCTTTGCCGAGTAGAA
TTCAGGCCACTGCCGAAGCTGCAGCGCGATCGAGCATTATGAAGGAGTGG
GATGCCCCGCGTTGGCATAGGGTGCTTGATTTCCGTAATCAGGAGACACA
GCGCTACATGGTACCAGAAAAGGCTTTTAGGTACCGCAACCCTTGGGGTT
TCTCGATAGTTGGACCATTGAAGCGAGGCCCTGCTATTGACGGAGGTCGA
CCCCGTGAGCACATTTTGCTCCGGAATGAACGCCCAAGTCACGTTACGAT
TCTTTGCATTGTGCGGGATGCTGCGAGTAGGCTTCCTAACAACCGAGGGA
CAAGAGCGGATATTTGCGATCTGTTGAGGGATAGTCAATACGTAAGAGAG
GGTGCCACATTTCAGCAACTGAACACTGTTGTGTCTGGAGCGCTTGACCG
CCTGCATTATGAAGAAAATGCTCCTGTTCGGTATGATGGAGAGACCAAAG
AGTGGTGTTATTTGCACAATGACATGAATGAAGAAGACTTTGAAAGGCCA
GCGTGGGCGCGCGAGACTTCACAGAAACAAGGAGCAGCGGTCGAGAATAC
GGCCATGGCGGTTGCGAGAAACAAGCCAAGGAAGAAGAAAAAAAGGAAAG
TCGCATGA