Gchil3341.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGchil3341.t1
Unique NameGchil3341.t1
TypemRNA
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length650
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000168_piloncontigtig00000168_pilon:282357..284306 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog130081.XP_005704654.1
PFAMsGYR,YLP
Max annot lvl2759|Eukaryota
GOsGO:0003674,GO:0005488,GO:0005515
Evalue1.53e-17
EggNOG OGs2CKD8@1|root,2QVCG@2759|Eukaryota
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil3341Gchil3341Gracilaria chilensis NLEC103_M9 malegenetig00000168_pilon 282357..284306 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil3341.t1.stop1Gchil3341.t1.stop1Gracilaria chilensis NLEC103_M9 malestop_codontig00000168_pilon 282357..282359 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil3341.t1.CDS1Gchil3341.t1.CDS1Gracilaria chilensis NLEC103_M9 maleCDStig00000168_pilon 282357..284306 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil3341.t1.exon1Gchil3341.t1.exon1Gracilaria chilensis NLEC103_M9 maleexontig00000168_pilon 282357..284306 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil3341.t1.start1Gchil3341.t1.start1Gracilaria chilensis NLEC103_M9 malestart_codontig00000168_pilon 284304..284306 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil3341.t1Gchil3341.t1Gracilaria chilensis NLEC103_M9 malepolypeptidetig00000168_pilon 282357..284306 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gchil3341.t1 ID=Gchil3341.t1|Name=Gchil3341.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=650bp
MCSSNVFKRPTVLLAILSLVLVFCTHPVLSLKTTRYNSDGVSASHSVFLR
KLQLAQNKGDHILDNELNAQDSERQTEDSLANQGVGDAQSVPDTERDEEQ
KAKKPEDDDLSDVEAQIQEIAKRVGITEEELKQANVFKSDANNAADHDAA
KPGYHDSSEDERGKADEDPVKISDARDQTDRIESLHGDDIRKPAQAPPEM
VAPGRPHLRKSEKKGTVEQPRASLGNSDEMTDSSMKSESSELVAQLDSYK
KRLNSLLKSEQEARENERMVRLEADELQKKLASMKNEKRRVEQLAAERNA
DLGKLRESVPQIVKEAKDEEKAEIEEMKETIEEQKRAFDELFEEKQMLSK
MLGDEQHKLDELQEKIQHPDLGLWVSQRAERAAILVEGPETDAIKYYASK
YMAPKVTKVKHRLQMLENRVEQTVDHLLPEKYGSVVAMLLSIGLVGFPIF
VTLSTVVSLTKGVSLRQYVLLGNIFLTSFAVGLCAAGLLLRQDPLQTLYE
ANSGMFILLQLCIGLGYPMFLGVLLLTVARCREKFDVLVFGCELLFYVVI
GMNYRARVWRPTMLGENIDCGSMMYVVYTMDFFAMTALTVALSRPTQFGG
FGGHDVEKGHGEDIGERSGRASVSSKGIGSLGSGLMQLVAGGKQDEKAE*
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spliced messenger RNA

>Gchil3341.t1 ID=Gchil3341.t1|Name=Gchil3341.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1950bp|location=Sequence derived from alignment at tig00000168_pilon:282357..284306- (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGTGCTCTTCAAACGTTTTCAAGCGGCCTACCGTACTGCTCGCCATATT
GTCGCTTGTATTAGTCTTTTGCACTCACCCCGTTCTGTCGCTCAAGACAA
CCCGCTATAATTCAGACGGAGTTTCAGCTTCTCATAGTGTTTTTCTGAGG
AAACTCCAACTGGCTCAAAACAAGGGTGATCACATTCTTGATAATGAATT
GAATGCACAAGACTCCGAACGTCAAACAGAGGATTCTTTGGCAAATCAGG
GGGTGGGCGATGCACAAAGTGTTCCCGACACTGAGCGCGATGAGGAGCAA
AAGGCCAAAAAGCCAGAAGATGATGATCTTAGTGATGTTGAGGCACAAAT
TCAAGAGATTGCGAAGCGAGTCGGAATCACTGAAGAAGAACTCAAGCAAG
CGAATGTCTTCAAATCTGATGCGAATAACGCCGCGGATCATGATGCTGCC
AAACCAGGCTACCACGACTCCTCGGAAGATGAACGTGGAAAGGCGGATGA
AGATCCGGTTAAAATATCCGACGCCAGAGACCAAACTGATCGCATAGAAT
CCCTTCATGGAGATGATATCCGAAAACCTGCGCAGGCACCACCGGAAATG
GTTGCTCCGGGACGACCACACTTGCGAAAATCGGAAAAGAAAGGAACTGT
CGAGCAACCACGTGCCTCTCTGGGTAACAGTGATGAGATGACAGACAGTT
CTATGAAGTCGGAAAGTTCTGAGCTTGTTGCACAGTTGGATTCGTATAAA
AAACGTTTAAACAGTCTCTTGAAAAGTGAACAAGAAGCACGGGAAAACGA
ACGAATGGTTAGACTTGAAGCGGATGAGTTGCAGAAGAAATTGGCATCGA
TGAAGAACGAAAAAAGGAGAGTGGAACAGCTCGCAGCGGAGCGCAATGCT
GATCTTGGAAAACTTCGCGAAAGCGTGCCTCAGATTGTGAAGGAGGCAAA
AGATGAAGAGAAGGCCGAAATTGAGGAGATGAAGGAGACCATCGAAGAGC
AAAAGAGAGCTTTTGATGAACTGTTTGAAGAGAAGCAAATGTTGTCAAAA
ATGCTTGGTGATGAACAACACAAGTTGGATGAGCTTCAGGAGAAAATTCA
ACATCCTGACCTAGGTTTGTGGGTGAGTCAGCGTGCTGAAAGGGCGGCAA
TTCTTGTGGAGGGTCCCGAAACGGATGCCATCAAGTATTACGCAAGCAAA
TACATGGCTCCGAAAGTCACAAAGGTGAAGCATCGACTACAAATGCTGGA
GAATCGAGTGGAGCAAACTGTAGACCATCTTTTACCAGAAAAGTACGGAA
GCGTGGTGGCTATGTTGCTGTCAATTGGACTGGTTGGGTTCCCAATATTT
GTTACATTATCGACCGTAGTTTCTCTGACGAAAGGAGTGTCGCTACGACA
GTATGTGCTTCTTGGAAATATATTCTTAACTTCGTTTGCGGTTGGACTGT
GCGCAGCTGGACTTTTGCTAAGGCAAGATCCGCTTCAGACATTGTACGAA
GCTAACAGTGGAATGTTTATATTGCTCCAGTTGTGTATCGGACTAGGGTA
CCCGATGTTTTTGGGGGTTTTGCTGCTCACTGTAGCGAGGTGTCGGGAAA
AATTTGACGTGCTTGTGTTTGGGTGCGAGTTGCTTTTCTACGTGGTTATC
GGTATGAATTATCGTGCACGCGTTTGGAGACCTACAATGTTGGGTGAGAA
CATTGATTGCGGAAGCATGATGTACGTTGTGTACACAATGGACTTTTTTG
CGATGACGGCGTTGACTGTGGCATTGTCACGACCAACGCAGTTTGGAGGA
TTTGGAGGACATGATGTTGAGAAAGGGCATGGAGAGGATATCGGTGAGAG
ATCTGGAAGGGCCAGCGTGAGCTCGAAGGGAATCGGATCGCTGGGGAGTG
GATTGATGCAACTAGTTGCTGGGGGCAAACAGGACGAGAAGGCTGAATAA
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protein sequence of Gchil3341.t1

>Gchil3341.t1 ID=Gchil3341.t1|Name=Gchil3341.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=650bp
MCSSNVFKRPTVLLAILSLVLVFCTHPVLSLKTTRYNSDGVSASHSVFLR
KLQLAQNKGDHILDNELNAQDSERQTEDSLANQGVGDAQSVPDTERDEEQ
KAKKPEDDDLSDVEAQIQEIAKRVGITEEELKQANVFKSDANNAADHDAA
KPGYHDSSEDERGKADEDPVKISDARDQTDRIESLHGDDIRKPAQAPPEM
VAPGRPHLRKSEKKGTVEQPRASLGNSDEMTDSSMKSESSELVAQLDSYK
KRLNSLLKSEQEARENERMVRLEADELQKKLASMKNEKRRVEQLAAERNA
DLGKLRESVPQIVKEAKDEEKAEIEEMKETIEEQKRAFDELFEEKQMLSK
MLGDEQHKLDELQEKIQHPDLGLWVSQRAERAAILVEGPETDAIKYYASK
YMAPKVTKVKHRLQMLENRVEQTVDHLLPEKYGSVVAMLLSIGLVGFPIF
VTLSTVVSLTKGVSLRQYVLLGNIFLTSFAVGLCAAGLLLRQDPLQTLYE
ANSGMFILLQLCIGLGYPMFLGVLLLTVARCREKFDVLVFGCELLFYVVI
GMNYRARVWRPTMLGENIDCGSMMYVVYTMDFFAMTALTVALSRPTQFGG
FGGHDVEKGHGEDIGERSGRASVSSKGIGSLGSGLMQLVAGGKQDEKAE*
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mRNA from alignment at tig00000168_pilon:282357..284306-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gchil3341.t1 ID=Gchil3341.t1|Name=Gchil3341.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1950bp|location=Sequence derived from alignment at tig00000168_pilon:282357..284306- (Gracilaria chilensis NLEC103_M9 male)
ATGTGCTCTTCAAACGTTTTCAAGCGGCCTACCGTACTGCTCGCCATATT
GTCGCTTGTATTAGTCTTTTGCACTCACCCCGTTCTGTCGCTCAAGACAA
CCCGCTATAATTCAGACGGAGTTTCAGCTTCTCATAGTGTTTTTCTGAGG
AAACTCCAACTGGCTCAAAACAAGGGTGATCACATTCTTGATAATGAATT
GAATGCACAAGACTCCGAACGTCAAACAGAGGATTCTTTGGCAAATCAGG
GGGTGGGCGATGCACAAAGTGTTCCCGACACTGAGCGCGATGAGGAGCAA
AAGGCCAAAAAGCCAGAAGATGATGATCTTAGTGATGTTGAGGCACAAAT
TCAAGAGATTGCGAAGCGAGTCGGAATCACTGAAGAAGAACTCAAGCAAG
CGAATGTCTTCAAATCTGATGCGAATAACGCCGCGGATCATGATGCTGCC
AAACCAGGCTACCACGACTCCTCGGAAGATGAACGTGGAAAGGCGGATGA
AGATCCGGTTAAAATATCCGACGCCAGAGACCAAACTGATCGCATAGAAT
CCCTTCATGGAGATGATATCCGAAAACCTGCGCAGGCACCACCGGAAATG
GTTGCTCCGGGACGACCACACTTGCGAAAATCGGAAAAGAAAGGAACTGT
CGAGCAACCACGTGCCTCTCTGGGTAACAGTGATGAGATGACAGACAGTT
CTATGAAGTCGGAAAGTTCTGAGCTTGTTGCACAGTTGGATTCGTATAAA
AAACGTTTAAACAGTCTCTTGAAAAGTGAACAAGAAGCACGGGAAAACGA
ACGAATGGTTAGACTTGAAGCGGATGAGTTGCAGAAGAAATTGGCATCGA
TGAAGAACGAAAAAAGGAGAGTGGAACAGCTCGCAGCGGAGCGCAATGCT
GATCTTGGAAAACTTCGCGAAAGCGTGCCTCAGATTGTGAAGGAGGCAAA
AGATGAAGAGAAGGCCGAAATTGAGGAGATGAAGGAGACCATCGAAGAGC
AAAAGAGAGCTTTTGATGAACTGTTTGAAGAGAAGCAAATGTTGTCAAAA
ATGCTTGGTGATGAACAACACAAGTTGGATGAGCTTCAGGAGAAAATTCA
ACATCCTGACCTAGGTTTGTGGGTGAGTCAGCGTGCTGAAAGGGCGGCAA
TTCTTGTGGAGGGTCCCGAAACGGATGCCATCAAGTATTACGCAAGCAAA
TACATGGCTCCGAAAGTCACAAAGGTGAAGCATCGACTACAAATGCTGGA
GAATCGAGTGGAGCAAACTGTAGACCATCTTTTACCAGAAAAGTACGGAA
GCGTGGTGGCTATGTTGCTGTCAATTGGACTGGTTGGGTTCCCAATATTT
GTTACATTATCGACCGTAGTTTCTCTGACGAAAGGAGTGTCGCTACGACA
GTATGTGCTTCTTGGAAATATATTCTTAACTTCGTTTGCGGTTGGACTGT
GCGCAGCTGGACTTTTGCTAAGGCAAGATCCGCTTCAGACATTGTACGAA
GCTAACAGTGGAATGTTTATATTGCTCCAGTTGTGTATCGGACTAGGGTA
CCCGATGTTTTTGGGGGTTTTGCTGCTCACTGTAGCGAGGTGTCGGGAAA
AATTTGACGTGCTTGTGTTTGGGTGCGAGTTGCTTTTCTACGTGGTTATC
GGTATGAATTATCGTGCACGCGTTTGGAGACCTACAATGTTGGGTGAGAA
CATTGATTGCGGAAGCATGATGTACGTTGTGTACACAATGGACTTTTTTG
CGATGACGGCGTTGACTGTGGCATTGTCACGACCAACGCAGTTTGGAGGA
TTTGGAGGACATGATGTTGAGAAAGGGCATGGAGAGGATATCGGTGAGAG
ATCTGGAAGGGCCAGCGTGAGCTCGAAGGGAATCGGATCGCTGGGGAGTG
GATTGATGCAACTAGTTGCTGGGGGCAAACAGGACGAGAAGGCTGAATAA
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Coding sequence (CDS) from alignment at tig00000168_pilon:282357..284306-

>Gchil3341.t1 ID=Gchil3341.t1|Name=Gchil3341.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=1950bp|location=Sequence derived from alignment at tig00000168_pilon:282357..284306- (Gracilaria chilensis NLEC103_M9 male)
ATGTGCTCTTCAAACGTTTTCAAGCGGCCTACCGTACTGCTCGCCATATT
GTCGCTTGTATTAGTCTTTTGCACTCACCCCGTTCTGTCGCTCAAGACAA
CCCGCTATAATTCAGACGGAGTTTCAGCTTCTCATAGTGTTTTTCTGAGG
AAACTCCAACTGGCTCAAAACAAGGGTGATCACATTCTTGATAATGAATT
GAATGCACAAGACTCCGAACGTCAAACAGAGGATTCTTTGGCAAATCAGG
GGGTGGGCGATGCACAAAGTGTTCCCGACACTGAGCGCGATGAGGAGCAA
AAGGCCAAAAAGCCAGAAGATGATGATCTTAGTGATGTTGAGGCACAAAT
TCAAGAGATTGCGAAGCGAGTCGGAATCACTGAAGAAGAACTCAAGCAAG
CGAATGTCTTCAAATCTGATGCGAATAACGCCGCGGATCATGATGCTGCC
AAACCAGGCTACCACGACTCCTCGGAAGATGAACGTGGAAAGGCGGATGA
AGATCCGGTTAAAATATCCGACGCCAGAGACCAAACTGATCGCATAGAAT
CCCTTCATGGAGATGATATCCGAAAACCTGCGCAGGCACCACCGGAAATG
GTTGCTCCGGGACGACCACACTTGCGAAAATCGGAAAAGAAAGGAACTGT
CGAGCAACCACGTGCCTCTCTGGGTAACAGTGATGAGATGACAGACAGTT
CTATGAAGTCGGAAAGTTCTGAGCTTGTTGCACAGTTGGATTCGTATAAA
AAACGTTTAAACAGTCTCTTGAAAAGTGAACAAGAAGCACGGGAAAACGA
ACGAATGGTTAGACTTGAAGCGGATGAGTTGCAGAAGAAATTGGCATCGA
TGAAGAACGAAAAAAGGAGAGTGGAACAGCTCGCAGCGGAGCGCAATGCT
GATCTTGGAAAACTTCGCGAAAGCGTGCCTCAGATTGTGAAGGAGGCAAA
AGATGAAGAGAAGGCCGAAATTGAGGAGATGAAGGAGACCATCGAAGAGC
AAAAGAGAGCTTTTGATGAACTGTTTGAAGAGAAGCAAATGTTGTCAAAA
ATGCTTGGTGATGAACAACACAAGTTGGATGAGCTTCAGGAGAAAATTCA
ACATCCTGACCTAGGTTTGTGGGTGAGTCAGCGTGCTGAAAGGGCGGCAA
TTCTTGTGGAGGGTCCCGAAACGGATGCCATCAAGTATTACGCAAGCAAA
TACATGGCTCCGAAAGTCACAAAGGTGAAGCATCGACTACAAATGCTGGA
GAATCGAGTGGAGCAAACTGTAGACCATCTTTTACCAGAAAAGTACGGAA
GCGTGGTGGCTATGTTGCTGTCAATTGGACTGGTTGGGTTCCCAATATTT
GTTACATTATCGACCGTAGTTTCTCTGACGAAAGGAGTGTCGCTACGACA
GTATGTGCTTCTTGGAAATATATTCTTAACTTCGTTTGCGGTTGGACTGT
GCGCAGCTGGACTTTTGCTAAGGCAAGATCCGCTTCAGACATTGTACGAA
GCTAACAGTGGAATGTTTATATTGCTCCAGTTGTGTATCGGACTAGGGTA
CCCGATGTTTTTGGGGGTTTTGCTGCTCACTGTAGCGAGGTGTCGGGAAA
AATTTGACGTGCTTGTGTTTGGGTGCGAGTTGCTTTTCTACGTGGTTATC
GGTATGAATTATCGTGCACGCGTTTGGAGACCTACAATGTTGGGTGAGAA
CATTGATTGCGGAAGCATGATGTACGTTGTGTACACAATGGACTTTTTTG
CGATGACGGCGTTGACTGTGGCATTGTCACGACCAACGCAGTTTGGAGGA
TTTGGAGGACATGATGTTGAGAAAGGGCATGGAGAGGATATCGGTGAGAG
ATCTGGAAGGGCCAGCGTGAGCTCGAAGGGAATCGGATCGCTGGGGAGTG
GATTGATGCAACTAGTTGCTGGGGGCAAACAGGACGAGAAGGCTGAATAA
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