Gchil3339.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGchil3339.t1
Unique NameGchil3339.t1
TypemRNA
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length654
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000168_piloncontigtig00000168_pilon:278772..280855 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog130081.XP_005703223.1
PFAMsWAK_assoc,zf-RING_2
Max annot lvl2759|Eukaryota
KEGG koko:K11982
GOsGO:0003674,GO:0003824,GO:0004842,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005768,GO:0005769,GO:0005770,GO:0005794,GO:0006464,GO:0006807,GO:0008150,GO:0008152,GO:0009966,GO:0009968,GO:0009987,GO:0010646,GO:0010648,GO:0012505,GO:0016567,GO:0016740,GO:0019538,GO:0019787,GO:0023051,GO:0023057,GO:0030111,GO:0030178,GO:0031410,GO:0031982,GO:0032446,GO:0036211,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043412,GO:0044237,GO:0044238,GO:0044260,GO:0044267,GO:0044424,GO:0044444,GO:0044464,GO:0048519,GO:0048523,GO:0048583,GO:0048585,GO:0050789,GO:0050794,GO:0065007,GO:0070647,GO:0071704,GO:0097708,GO:0140096,GO:1901564
Evalue3.22e-14
EggNOG OGsKOG0800@1|root,KOG0800@2759|Eukaryota
EC2.3.2.27
Descriptionubiquitin-protein transferase activity
COG categoryO
BRITEko00000,ko01000,ko04121,ko04131
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil3339Gchil3339Gracilaria chilensis NLEC103_M9 malegenetig00000168_pilon 278772..280855 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil3339.t1Gchil3339.t1Gracilaria chilensis NLEC103_M9 malepolypeptidetig00000168_pilon 278772..280855 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil3339.t1.stop1Gchil3339.t1.stop1Gracilaria chilensis NLEC103_M9 malestop_codontig00000168_pilon 278772..278774 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil3339.t1.CDS1Gchil3339.t1.CDS1Gracilaria chilensis NLEC103_M9 maleCDStig00000168_pilon 278772..278860 -
Gchil3339.t1.CDS2Gchil3339.t1.CDS2Gracilaria chilensis NLEC103_M9 maleCDStig00000168_pilon 278983..280855 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil3339.t1.exon1Gchil3339.t1.exon1Gracilaria chilensis NLEC103_M9 maleexontig00000168_pilon 278772..278860 -
Gchil3339.t1.exon2Gchil3339.t1.exon2Gracilaria chilensis NLEC103_M9 maleexontig00000168_pilon 278983..280855 -


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil3339.t1.intron1Gchil3339.t1.intron1Gracilaria chilensis NLEC103_M9 maleintrontig00000168_pilon 278861..278982 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil3339.t1.start1Gchil3339.t1.start1Gracilaria chilensis NLEC103_M9 malestart_codontig00000168_pilon 280853..280855 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gchil3339.t1 ID=Gchil3339.t1|Name=Gchil3339.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=654bp
MPRSAAVVEDDTDIVVVETVPSSPPRDRHLAPHNVIVLDNSRPPPRTTNS
SIEPIVIDEAPRKRRRRDQSSSHPSSHNPVSHPQHVIIVDDSDSPPHRPS
LIAFRGRETQTSRIERQRIHLHQRNASPSPYEEDIIEMAVSGPRLAPEQP
PPPPPILNSGETLVQPSFSMTPNIPPPANQRQSMPPWPDLNSPFSALNRL
PDSATSTEQLGLHNLQLPSIPAVEPQPRSQSHPTERHYTPHLVELDQILA
RNHRISSHRHRDYRNNTDASQFTPALRPSSVHPSGHLHRHPHRHNPTVSH
RYIHLERDQGGSTGPVLVPGFVRVGAVRREHTSQSNRPSRYSGDATASPY
AASTGFFPPSQPRLNPLRQSDQSDANQFSQNVDSTADHLESRNGNHYAAA
TTNMNTAISDSLNSPAPHGATPLQAPRAQFRRHTHTAHSGAESDGAELAG
YRELRHLQRRRDHYRSRQSPRRMSTARPLPAVSPFANVARNNLLGAQRLQ
RQAAMRARARSQNPVPHRHSHHHITAVLNRMLNQVGGPPVEIHYFHGLQH
PDHSLDYERLIRLDDQLIREKNRAERDQIDSLPVKKATTEDKEIRCCICM
CDVEEGEDLRVLPCAHKYHKSCIDEWLTYNGCCPVDKKRIAPSRPRRRCA
RHS*
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spliced messenger RNA

>Gchil3339.t1 ID=Gchil3339.t1|Name=Gchil3339.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1962bp|location=Sequence derived from alignment at tig00000168_pilon:278772..280855- (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCCCCGCAGTGCCGCTGTCGTAGAGGATGATACGGACATCGTCGTCGT
CGAGACCGTGCCATCTAGCCCTCCGCGCGATCGTCACCTCGCCCCCCACA
ACGTCATCGTGCTAGATAATTCCCGACCGCCCCCCCGCACAACGAACAGC
TCCATCGAGCCCATTGTAATCGACGAAGCCCCGCGAAAACGTCGCCGTCG
AGATCAATCTTCCTCGCATCCCTCATCTCACAATCCCGTTTCTCACCCTC
AACATGTCATTATCGTTGACGATAGTGACTCACCTCCCCATCGCCCGTCT
CTCATTGCATTCAGGGGACGCGAAACGCAAACCTCGCGCATTGAGCGGCA
ACGCATCCACCTGCATCAACGCAATGCATCGCCTTCTCCGTACGAGGAAG
ATATTATCGAAATGGCTGTATCCGGACCGCGCCTCGCACCGGAACAACCA
CCGCCTCCCCCGCCCATCCTCAACTCCGGCGAAACTCTCGTCCAGCCTTC
GTTTTCAATGACGCCCAATATCCCCCCTCCTGCAAACCAGCGTCAGAGTA
TGCCGCCATGGCCAGACTTAAACTCTCCGTTTTCCGCTCTCAACCGCCTG
CCAGACTCCGCTACTTCAACGGAACAGTTAGGCCTGCACAACTTGCAGCT
TCCATCCATTCCTGCGGTGGAACCTCAACCGAGATCGCAGTCACATCCCA
CAGAACGTCATTATACTCCTCATCTTGTGGAGCTCGATCAAATACTTGCA
AGGAACCATCGTATATCTTCCCATCGCCATCGCGACTACCGTAACAATAC
CGATGCAAGTCAGTTTACACCCGCTCTGCGTCCCTCGTCTGTCCACCCAT
CTGGGCACTTGCATCGCCATCCGCACAGGCACAATCCAACTGTTTCACAT
CGATATATTCACTTGGAACGCGATCAAGGGGGTTCCACAGGCCCGGTTTT
AGTTCCAGGCTTCGTTCGTGTGGGCGCAGTGCGGCGCGAGCATACCTCTC
AATCGAACAGGCCATCTAGATACAGTGGCGATGCCACTGCTAGCCCGTAC
GCAGCCTCCACGGGCTTCTTTCCCCCCTCCCAACCTCGCTTAAATCCCTT
ACGACAGAGCGATCAGTCTGATGCAAACCAGTTTTCCCAAAATGTGGACA
GTACTGCGGACCACTTGGAAAGCCGAAATGGCAACCACTACGCTGCGGCC
ACAACAAATATGAACACCGCGATAAGTGACAGTCTGAACTCACCGGCTCC
CCACGGTGCAACACCGCTTCAGGCACCACGGGCACAGTTTCGAAGACACA
CGCATACGGCTCATAGTGGTGCAGAATCGGATGGTGCAGAGTTAGCAGGC
TATCGTGAATTACGTCACCTACAACGCAGACGCGACCATTATCGAAGCCG
CCAATCACCTCGTCGCATGTCTACCGCGCGGCCGCTCCCCGCTGTGTCTC
CCTTTGCAAATGTTGCCCGCAATAACTTATTAGGCGCTCAGAGGTTGCAG
CGTCAAGCGGCTATGAGGGCGAGGGCTCGATCGCAAAACCCCGTTCCCCA
TCGTCACTCTCATCACCACATTACAGCCGTTCTAAACCGCATGTTGAACC
AAGTTGGTGGACCACCCGTGGAAATCCACTATTTCCATGGATTGCAGCAT
CCAGATCACTCTCTTGATTATGAACGCCTAATTCGCCTGGACGATCAGCT
CATCCGAGAGAAGAATCGCGCCGAAAGAGACCAGATCGATTCTTTGCCTG
TAAAGAAGGCAACCACCGAAGACAAGGAAATACGCTGCTGCATTTGCATG
TGTGATGTTGAAGAAGGAGAGGACCTTCGTGTCCTTCCCTGTGCCCACAA
ATATCACAAGAGTTGTATTGACGAATGGCTTACGTACAATGGATGTTGCC
CCGTCGATAAGAAGAGAATCGCGCCGTCGCGCCCTAGAAGAAGGTGTGCC
CGCCACAGTTGA
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protein sequence of Gchil3339.t1

>Gchil3339.t1 ID=Gchil3339.t1|Name=Gchil3339.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=654bp
MPRSAAVVEDDTDIVVVETVPSSPPRDRHLAPHNVIVLDNSRPPPRTTNS
SIEPIVIDEAPRKRRRRDQSSSHPSSHNPVSHPQHVIIVDDSDSPPHRPS
LIAFRGRETQTSRIERQRIHLHQRNASPSPYEEDIIEMAVSGPRLAPEQP
PPPPPILNSGETLVQPSFSMTPNIPPPANQRQSMPPWPDLNSPFSALNRL
PDSATSTEQLGLHNLQLPSIPAVEPQPRSQSHPTERHYTPHLVELDQILA
RNHRISSHRHRDYRNNTDASQFTPALRPSSVHPSGHLHRHPHRHNPTVSH
RYIHLERDQGGSTGPVLVPGFVRVGAVRREHTSQSNRPSRYSGDATASPY
AASTGFFPPSQPRLNPLRQSDQSDANQFSQNVDSTADHLESRNGNHYAAA
TTNMNTAISDSLNSPAPHGATPLQAPRAQFRRHTHTAHSGAESDGAELAG
YRELRHLQRRRDHYRSRQSPRRMSTARPLPAVSPFANVARNNLLGAQRLQ
RQAAMRARARSQNPVPHRHSHHHITAVLNRMLNQVGGPPVEIHYFHGLQH
PDHSLDYERLIRLDDQLIREKNRAERDQIDSLPVKKATTEDKEIRCCICM
CDVEEGEDLRVLPCAHKYHKSCIDEWLTYNGCCPVDKKRIAPSRPRRRCA
RHS*
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mRNA from alignment at tig00000168_pilon:278772..280855-

Legend: polypeptideCDSexonstart_codonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gchil3339.t1 ID=Gchil3339.t1|Name=Gchil3339.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=2084bp|location=Sequence derived from alignment at tig00000168_pilon:278772..280855- (Gracilaria chilensis NLEC103_M9 male)
ATGCCCCGCAGTGCCGCTGTCGTAGAGGATGATACGGACATCGTCGTCGT
CGAGACCGTGCCATCTAGCCCTCCGCGCGATCGTCACCTCGCCCCCCACA
ACGTCATCGTGCTAGATAATTCCCGACCGCCCCCCCGCACAACGAACAGC
TCCATCGAGCCCATTGTAATCGACGAAGCCCCGCGAAAACGTCGCCGTCG
AGATCAATCTTCCTCGCATCCCTCATCTCACAATCCCGTTTCTCACCCTC
AACATGTCATTATCGTTGACGATAGTGACTCACCTCCCCATCGCCCGTCT
CTCATTGCATTCAGGGGACGCGAAACGCAAACCTCGCGCATTGAGCGGCA
ACGCATCCACCTGCATCAACGCAATGCATCGCCTTCTCCGTACGAGGAAG
ATATTATCGAAATGGCTGTATCCGGACCGCGCCTCGCACCGGAACAACCA
CCGCCTCCCCCGCCCATCCTCAACTCCGGCGAAACTCTCGTCCAGCCTTC
GTTTTCAATGACGCCCAATATCCCCCCTCCTGCAAACCAGCGTCAGAGTA
TGCCGCCATGGCCAGACTTAAACTCTCCGTTTTCCGCTCTCAACCGCCTG
CCAGACTCCGCTACTTCAACGGAACAGTTAGGCCTGCACAACTTGCAGCT
TCCATCCATTCCTGCGGTGGAACCTCAACCGAGATCGCAGTCACATCCCA
CAGAACGTCATTATACTCCTCATCTTGTGGAGCTCGATCAAATACTTGCA
AGGAACCATCGTATATCTTCCCATCGCCATCGCGACTACCGTAACAATAC
CGATGCAAGTCAGTTTACACCCGCTCTGCGTCCCTCGTCTGTCCACCCAT
CTGGGCACTTGCATCGCCATCCGCACAGGCACAATCCAACTGTTTCACAT
CGATATATTCACTTGGAACGCGATCAAGGGGGTTCCACAGGCCCGGTTTT
AGTTCCAGGCTTCGTTCGTGTGGGCGCAGTGCGGCGCGAGCATACCTCTC
AATCGAACAGGCCATCTAGATACAGTGGCGATGCCACTGCTAGCCCGTAC
GCAGCCTCCACGGGCTTCTTTCCCCCCTCCCAACCTCGCTTAAATCCCTT
ACGACAGAGCGATCAGTCTGATGCAAACCAGTTTTCCCAAAATGTGGACA
GTACTGCGGACCACTTGGAAAGCCGAAATGGCAACCACTACGCTGCGGCC
ACAACAAATATGAACACCGCGATAAGTGACAGTCTGAACTCACCGGCTCC
CCACGGTGCAACACCGCTTCAGGCACCACGGGCACAGTTTCGAAGACACA
CGCATACGGCTCATAGTGGTGCAGAATCGGATGGTGCAGAGTTAGCAGGC
TATCGTGAATTACGTCACCTACAACGCAGACGCGACCATTATCGAAGCCG
CCAATCACCTCGTCGCATGTCTACCGCGCGGCCGCTCCCCGCTGTGTCTC
CCTTTGCAAATGTTGCCCGCAATAACTTATTAGGCGCTCAGAGGTTGCAG
CGTCAAGCGGCTATGAGGGCGAGGGCTCGATCGCAAAACCCCGTTCCCCA
TCGTCACTCTCATCACCACATTACAGCCGTTCTAAACCGCATGTTGAACC
AAGTTGGTGGACCACCCGTGGAAATCCACTATTTCCATGGATTGCAGCAT
CCAGATCACTCTCTTGATTATGAACGCCTAATTCGCCTGGACGATCAGCT
CATCCGAGAGAAGAATCGCGCCGAAAGAGACCAGATCGATTCTTTGCCTG
TAAAGAAGGCAACCACCGAAGACAAGGAAATACGCTGCTGCATTTGCATG
TGTGATGTTGAAGAAGGAGAGGACCTTCGTGTCCTTCCCTGTGCCCACAA
ATATCACAAGAGTTGTATTGACGGTAAGTTACCCTTATCACCATGTTGGG
GGTTACTAAAAGTGCAGATATCTTTTCCTTTTGTTTTAAGTTGCTAACAA
GTACCCTACTTTTTTGTTTGTCCTGGACAATATTCGCCGTCGCAGAATGG
CTTACGTACAATGGATGTTGCCCCGTCGATAAGAAGAGAATCGCGCCGTC
GCGCCCTAGAAGAAGGTGTGCCCGCCACAGTTGA
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Coding sequence (CDS) from alignment at tig00000168_pilon:278772..280855-

>Gchil3339.t1 ID=Gchil3339.t1|Name=Gchil3339.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=1962bp|location=Sequence derived from alignment at tig00000168_pilon:278772..280855- (Gracilaria chilensis NLEC103_M9 male)
ATGCCCCGCAGTGCCGCTGTCGTAGAGGATGATACGGACATCGTCGTCGT
CGAGACCGTGCCATCTAGCCCTCCGCGCGATCGTCACCTCGCCCCCCACA
ACGTCATCGTGCTAGATAATTCCCGACCGCCCCCCCGCACAACGAACAGC
TCCATCGAGCCCATTGTAATCGACGAAGCCCCGCGAAAACGTCGCCGTCG
AGATCAATCTTCCTCGCATCCCTCATCTCACAATCCCGTTTCTCACCCTC
AACATGTCATTATCGTTGACGATAGTGACTCACCTCCCCATCGCCCGTCT
CTCATTGCATTCAGGGGACGCGAAACGCAAACCTCGCGCATTGAGCGGCA
ACGCATCCACCTGCATCAACGCAATGCATCGCCTTCTCCGTACGAGGAAG
ATATTATCGAAATGGCTGTATCCGGACCGCGCCTCGCACCGGAACAACCA
CCGCCTCCCCCGCCCATCCTCAACTCCGGCGAAACTCTCGTCCAGCCTTC
GTTTTCAATGACGCCCAATATCCCCCCTCCTGCAAACCAGCGTCAGAGTA
TGCCGCCATGGCCAGACTTAAACTCTCCGTTTTCCGCTCTCAACCGCCTG
CCAGACTCCGCTACTTCAACGGAACAGTTAGGCCTGCACAACTTGCAGCT
TCCATCCATTCCTGCGGTGGAACCTCAACCGAGATCGCAGTCACATCCCA
CAGAACGTCATTATACTCCTCATCTTGTGGAGCTCGATCAAATACTTGCA
AGGAACCATCGTATATCTTCCCATCGCCATCGCGACTACCGTAACAATAC
CGATGCAAGTCAGTTTACACCCGCTCTGCGTCCCTCGTCTGTCCACCCAT
CTGGGCACTTGCATCGCCATCCGCACAGGCACAATCCAACTGTTTCACAT
CGATATATTCACTTGGAACGCGATCAAGGGGGTTCCACAGGCCCGGTTTT
AGTTCCAGGCTTCGTTCGTGTGGGCGCAGTGCGGCGCGAGCATACCTCTC
AATCGAACAGGCCATCTAGATACAGTGGCGATGCCACTGCTAGCCCGTAC
GCAGCCTCCACGGGCTTCTTTCCCCCCTCCCAACCTCGCTTAAATCCCTT
ACGACAGAGCGATCAGTCTGATGCAAACCAGTTTTCCCAAAATGTGGACA
GTACTGCGGACCACTTGGAAAGCCGAAATGGCAACCACTACGCTGCGGCC
ACAACAAATATGAACACCGCGATAAGTGACAGTCTGAACTCACCGGCTCC
CCACGGTGCAACACCGCTTCAGGCACCACGGGCACAGTTTCGAAGACACA
CGCATACGGCTCATAGTGGTGCAGAATCGGATGGTGCAGAGTTAGCAGGC
TATCGTGAATTACGTCACCTACAACGCAGACGCGACCATTATCGAAGCCG
CCAATCACCTCGTCGCATGTCTACCGCGCGGCCGCTCCCCGCTGTGTCTC
CCTTTGCAAATGTTGCCCGCAATAACTTATTAGGCGCTCAGAGGTTGCAG
CGTCAAGCGGCTATGAGGGCGAGGGCTCGATCGCAAAACCCCGTTCCCCA
TCGTCACTCTCATCACCACATTACAGCCGTTCTAAACCGCATGTTGAACC
AAGTTGGTGGACCACCCGTGGAAATCCACTATTTCCATGGATTGCAGCAT
CCAGATCACTCTCTTGATTATGAACGCCTAATTCGCCTGGACGATCAGCT
CATCCGAGAGAAGAATCGCGCCGAAAGAGACCAGATCGATTCTTTGCCTG
TAAAGAAGGCAACCACCGAAGACAAGGAAATACGCTGCTGCATTTGCATG
TGTGATGTTGAAGAAGGAGAGGACCTTCGTGTCCTTCCCTGTGCCCACAA
ATATCACAAGAGTTGTATTGACGAATGGCTTACGTACAATGGATGTTGCC
CCGTCGATAAGAAGAGAATCGCGCCGTCGCGCCCTAGAAGAAGGTGTGCC
CGCCACAGTTGA
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