Gchil3368.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGchil3368.t1
Unique NameGchil3368.t1
TypemRNA
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length230
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000168_piloncontigtig00000168_pilon:539837..540617 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog242159.ABO98387
PFAMsPAP2
Max annot lvl3041|Chlorophyta
KEGG rclassRC00002
KEGG koko:K07252
KEGG ReactionR01004
KEGG Pathwayko00510,map00510
Evalue1.04e-24
EggNOG OGsCOG0671@1|root,KOG3146@2759|Eukaryota,37MC6@33090|Viridiplantae,34ID8@3041|Chlorophyta
EC3.6.1.43
DescriptionLipid phosphate phosphatase epsilon
COG categoryI
BRITEko00000,ko00001,ko01000
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil3368Gchil3368Gracilaria chilensis NLEC103_M9 malegenetig00000168_pilon 539837..540617 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil3368.t1Gchil3368.t1Gracilaria chilensis NLEC103_M9 malepolypeptidetig00000168_pilon 539837..540617 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil3368.t1.start1Gchil3368.t1.start1Gracilaria chilensis NLEC103_M9 malestart_codontig00000168_pilon 539837..539839 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil3368.t1.CDS1Gchil3368.t1.CDS1Gracilaria chilensis NLEC103_M9 maleCDStig00000168_pilon 539837..540430 +
Gchil3368.t1.CDS2Gchil3368.t1.CDS2Gracilaria chilensis NLEC103_M9 maleCDStig00000168_pilon 540522..540617 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil3368.t1.exon1Gchil3368.t1.exon1Gracilaria chilensis NLEC103_M9 maleexontig00000168_pilon 539837..540430 +
Gchil3368.t1.exon2Gchil3368.t1.exon2Gracilaria chilensis NLEC103_M9 maleexontig00000168_pilon 540522..540617 +


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil3368.t1.intron1Gchil3368.t1.intron1Gracilaria chilensis NLEC103_M9 maleintrontig00000168_pilon 540431..540521 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil3368.t1.stop1Gchil3368.t1.stop1Gracilaria chilensis NLEC103_M9 malestop_codontig00000168_pilon 540615..540617 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gchil3368.t1 ID=Gchil3368.t1|Name=Gchil3368.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=230bp
MAFVLTTHLPHLLRPVSIQRDCKRPLTMSTNRTPLNKVLADVTKYTVSVA
VGSLVLYNHDAPTIFYIMAAVLNSAAGKVLKLLIKQPRPDGAQRGDPGMP
SSHATSLSFLSLAFLGYIALYFDSVAKTVGAGVMVIMSVLASSWRVSAGY
HTVPQVVAGWIVGSINVAVYITLLPKILPRLDLLMEGKALFVTTVILMAA
FVVIVGPDLIPFVRRFSRATRRYRDPSSQ*
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spliced messenger RNA

>Gchil3368.t1 ID=Gchil3368.t1|Name=Gchil3368.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=690bp|location=Sequence derived from alignment at tig00000168_pilon:539837..540617+ (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGCCTTCGTTCTTACTACCCATCTCCCTCATTTGCTTCGCCCTGTTAG
TATTCAACGAGATTGCAAACGCCCGCTTACCATGAGCACCAACCGAACGC
CGCTGAACAAGGTTCTTGCTGATGTTACCAAATATACTGTTTCTGTCGCG
GTGGGCAGTTTGGTTCTCTACAACCATGACGCACCAACTATCTTCTATAT
CATGGCCGCTGTACTCAATTCAGCCGCTGGGAAAGTGTTGAAACTTCTAA
TAAAGCAACCAAGGCCTGATGGTGCACAAAGGGGGGATCCTGGTATGCCA
TCGTCCCATGCGACTTCTTTGTCATTCTTATCGCTGGCATTCCTCGGATA
TATCGCGTTATACTTCGACTCTGTTGCAAAAACTGTGGGTGCTGGGGTTA
TGGTTATAATGTCGGTTCTGGCTTCATCTTGGCGCGTTTCAGCTGGATAC
CACACTGTCCCGCAAGTTGTCGCAGGGTGGATTGTCGGTTCGATCAATGT
GGCAGTATACATTACGTTGCTTCCCAAGATTTTACCTCGCCTTGACCTTC
TGATGGAGGGAAAGGCTTTGTTCGTCACAACTGTGATACTGATGGCAGCC
TTCGTGGTTATCGTGGGCCCAGATCTTATTCCTTTTGTTCGTCGCTTTTC
AAGAGCGACGCGGCGGTATCGCGACCCATCATCTCAATAG
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protein sequence of Gchil3368.t1

>Gchil3368.t1 ID=Gchil3368.t1|Name=Gchil3368.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=230bp
MAFVLTTHLPHLLRPVSIQRDCKRPLTMSTNRTPLNKVLADVTKYTVSVA
VGSLVLYNHDAPTIFYIMAAVLNSAAGKVLKLLIKQPRPDGAQRGDPGMP
SSHATSLSFLSLAFLGYIALYFDSVAKTVGAGVMVIMSVLASSWRVSAGY
HTVPQVVAGWIVGSINVAVYITLLPKILPRLDLLMEGKALFVTTVILMAA
FVVIVGPDLIPFVRRFSRATRRYRDPSSQ*
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mRNA from alignment at tig00000168_pilon:539837..540617+

Legend: polypeptidestart_codonCDSexonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gchil3368.t1 ID=Gchil3368.t1|Name=Gchil3368.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=781bp|location=Sequence derived from alignment at tig00000168_pilon:539837..540617+ (Gracilaria chilensis NLEC103_M9 male)
ATGGCCTTCGTTCTTACTACCCATCTCCCTCATTTGCTTCGCCCTGTTAG
TATTCAACGAGATTGCAAACGCCCGCTTACCATGAGCACCAACCGAACGC
CGCTGAACAAGGTTCTTGCTGATGTTACCAAATATACTGTTTCTGTCGCG
GTGGGCAGTTTGGTTCTCTACAACCATGACGCACCAACTATCTTCTATAT
CATGGCCGCTGTACTCAATTCAGCCGCTGGGAAAGTGTTGAAACTTCTAA
TAAAGCAACCAAGGCCTGATGGTGCACAAAGGGGGGATCCTGGTATGCCA
TCGTCCCATGCGACTTCTTTGTCATTCTTATCGCTGGCATTCCTCGGATA
TATCGCGTTATACTTCGACTCTGTTGCAAAAACTGTGGGTGCTGGGGTTA
TGGTTATAATGTCGGTTCTGGCTTCATCTTGGCGCGTTTCAGCTGGATAC
CACACTGTCCCGCAAGTTGTCGCAGGGTGGATTGTCGGTTCGATCAATGT
GGCAGTATACATTACGTTGCTTCCCAAGATTTTACCTCGCCTTGACCTTC
TGATGGAGGGAAAGGCTTTGTTCGTCACAACTGTGATACTGATGGTAAGT
TCTTCCCCTTGCATGTATTAAGGTGAGACTGTGTGGCATCAGAGTTTTTG
GCTGACATCATTTCGAAATATACAAATTTCCTCAGGCAGCCTTCGTGGTT
ATCGTGGGCCCAGATCTTATTCCTTTTGTTCGTCGCTTTTCAAGAGCGAC
GCGGCGGTATCGCGACCCATCATCTCAATAG
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Coding sequence (CDS) from alignment at tig00000168_pilon:539837..540617+

>Gchil3368.t1 ID=Gchil3368.t1|Name=Gchil3368.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=690bp|location=Sequence derived from alignment at tig00000168_pilon:539837..540617+ (Gracilaria chilensis NLEC103_M9 male)
ATGGCCTTCGTTCTTACTACCCATCTCCCTCATTTGCTTCGCCCTGTTAG
TATTCAACGAGATTGCAAACGCCCGCTTACCATGAGCACCAACCGAACGC
CGCTGAACAAGGTTCTTGCTGATGTTACCAAATATACTGTTTCTGTCGCG
GTGGGCAGTTTGGTTCTCTACAACCATGACGCACCAACTATCTTCTATAT
CATGGCCGCTGTACTCAATTCAGCCGCTGGGAAAGTGTTGAAACTTCTAA
TAAAGCAACCAAGGCCTGATGGTGCACAAAGGGGGGATCCTGGTATGCCA
TCGTCCCATGCGACTTCTTTGTCATTCTTATCGCTGGCATTCCTCGGATA
TATCGCGTTATACTTCGACTCTGTTGCAAAAACTGTGGGTGCTGGGGTTA
TGGTTATAATGTCGGTTCTGGCTTCATCTTGGCGCGTTTCAGCTGGATAC
CACACTGTCCCGCAAGTTGTCGCAGGGTGGATTGTCGGTTCGATCAATGT
GGCAGTATACATTACGTTGCTTCCCAAGATTTTACCTCGCCTTGACCTTC
TGATGGAGGGAAAGGCTTTGTTCGTCACAACTGTGATACTGATGGCAGCC
TTCGTGGTTATCGTGGGCCCAGATCTTATTCCTTTTGTTCGTCGCTTTTC
AAGAGCGACGCGGCGGTATCGCGACCCATCATCTCAATAG
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