Gchil7315.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGchil7315.t1
Unique NameGchil7315.t1
TypemRNA
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length339
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000007_piloncontigtig00000007_pilon:97961..98977 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog130081.XP_005708572.1
Preferred nameSRR
PFAMsPALP
Max annot lvl2759|Eukaryota
KEGG rclassRC00302,RC00418,RC02600
KEGG koko:K01754,ko:K12235,ko:K17538,ko:K19413,ko:K21851
KEGG ReactionR00220,R00589,R00996
KEGG Pathwayko00260,ko00290,ko01100,ko01110,ko01130,ko01200,ko01230,map00260,map00290,map01100,map01110,map01130,map01200,map01230
KEGG ModuleM00570
GOsGO:0000166,GO:0000287,GO:0002237,GO:0003674,GO:0003824,GO:0003941,GO:0005488,GO:0005509,GO:0005515,GO:0005524,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005886,GO:0006082,GO:0006090,GO:0006520,GO:0006563,GO:0006564,GO:0006807,GO:0007275,GO:0007399,GO:0007417,GO:0007420,GO:0007568,GO:0008144,GO:0008150,GO:0008152,GO:0008652,GO:0008721,GO:0009058,GO:0009069,GO:0009070,GO:0009410,GO:0009605,GO:0009607,GO:0009617,GO:0009987,GO:0010033,GO:0010243,GO:0014070,GO:0014072,GO:0016020,GO:0016043,GO:0016053,GO:0016594,GO:0016597,GO:0016829,GO:0016840,GO:0016841,GO:0016853,GO:0016854,GO:0016855,GO:0017076,GO:0017144,GO:0018114,GO:0019752,GO:0019842,GO:0019904,GO:0022607,GO:0030165,GO:0030170,GO:0030378,GO:0030554,GO:0031406,GO:0032496,GO:0032501,GO:0032502,GO:0032553,GO:0032555,GO:0032559,GO:0032787,GO:0033993,GO:0035639,GO:0036094,GO:0036361,GO:0036477,GO:0042165,GO:0042221,GO:0042493,GO:0042802,GO:0042803,GO:0042866,GO:0043025,GO:0043167,GO:0043168,GO:0043169,GO:0043177,GO:0043207,GO:0043278,GO:0043279,GO:0043436,GO:0043933,GO:0044085,GO:0044237,GO:0044238,GO:0044249,GO:0044281,GO:0044283,GO:0044297,GO:0044424,GO:0044444,GO:0044464,GO:0045177,GO:0046394,GO:0046416,GO:0046437,GO:0046872,GO:0046983,GO:0047661,GO:0048037,GO:0048513,GO:0048731,GO:0048856,GO:0050662,GO:0050896,GO:0051259,GO:0051260,GO:0051262,GO:0051289,GO:0051704,GO:0051707,GO:0060322,GO:0060359,GO:0065003,GO:0070178,GO:0070179,GO:0070279,GO:0071704,GO:0071840,GO:0071944,GO:0072330,GO:0072347,GO:0097159,GO:0097367,GO:0097458,GO:1901265,GO:1901363,GO:1901564,GO:1901566,GO:1901576,GO:1901605,GO:1901607,GO:1901698,GO:1901700
Evalue9.23e-88
EggNOG OGsCOG1171@1|root,KOG1251@2759|Eukaryota
EC2.7.10.2,4.3.1.19,5.1.1.18
Descriptionserine racemase
COG categoryE
BRITEko00000,ko00001,ko00002,ko01000,ko01001,ko03036,ko04131
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil7315Gchil7315Gracilaria chilensis NLEC103_M9 malegenetig00000007_pilon 97961..98977 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil7315.t1.stop1Gchil7315.t1.stop1Gracilaria chilensis NLEC103_M9 malestop_codontig00000007_pilon 97961..97963 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil7315.t1.CDS1Gchil7315.t1.CDS1Gracilaria chilensis NLEC103_M9 maleCDStig00000007_pilon 97961..98977 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil7315.t1.exon1Gchil7315.t1.exon1Gracilaria chilensis NLEC103_M9 maleexontig00000007_pilon 97961..98977 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil7315.t1.start1Gchil7315.t1.start1Gracilaria chilensis NLEC103_M9 malestart_codontig00000007_pilon 98975..98977 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil7315.t1Gchil7315.t1Gracilaria chilensis NLEC103_M9 malepolypeptidetig00000007_pilon 97961..98977 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gchil7315.t1 ID=Gchil7315.t1|Name=Gchil7315.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=339bp
MATETASLDLVREASTASGVSLYDIQQAAEVMKDKAHLTPVITSTLVNRS
LSSCQTEFYFKCENFQRTGSFKFRGAYYAISSLQSGVTKGTSVVTHSSGN
HAQAIAAAAALHDVRAHVVMPDNAAHVKVQAVKSYGGQITFCKPNSHDRM
KTAEQVRKIERGTLVHPFENPYVVAGQGTIGLELIHQAHNLEAIIVPIGG
GGLISGITIAVKSFDPSIVVIGAEPELACGAFQSFQKNERVPVSGASETV
ADGLKTGIGNLGWEVVSRLVDRIITVSEEEILQATKMVWEFMKIVIEPSS
GVGVAAARSTEFRNLGFKRVGIILCGGNVNLDSLPWQK*
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spliced messenger RNA

>Gchil7315.t1 ID=Gchil7315.t1|Name=Gchil7315.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1017bp|location=Sequence derived from alignment at tig00000007_pilon:97961..98977- (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGCAACAGAAACTGCTTCCCTGGACCTCGTCAGAGAAGCATCTACCGC
TTCTGGAGTGTCTCTGTATGACATTCAACAAGCCGCTGAGGTGATGAAAG
ACAAGGCACATCTCACCCCTGTAATCACCAGTACTCTTGTGAATCGGTCA
TTGTCTTCATGTCAAACTGAATTCTATTTCAAGTGCGAGAACTTTCAAAG
GACTGGCTCATTTAAGTTTCGTGGCGCGTACTATGCTATCTCTTCTCTTC
AAAGTGGCGTCACCAAGGGCACTTCCGTTGTCACTCATTCATCTGGAAAC
CATGCGCAAGCCATTGCAGCAGCTGCTGCCTTGCATGATGTCAGGGCCCA
TGTAGTCATGCCTGACAATGCGGCGCACGTGAAGGTTCAAGCTGTGAAGA
GCTACGGGGGCCAGATTACGTTTTGTAAACCCAATTCTCATGATAGAATG
AAGACGGCTGAGCAAGTGCGAAAGATTGAACGAGGAACTCTGGTGCACCC
ATTTGAAAACCCGTATGTTGTGGCTGGTCAAGGAACAATTGGTCTCGAAT
TAATTCATCAAGCCCACAATCTCGAAGCAATCATCGTTCCTATAGGAGGC
GGAGGACTCATTTCGGGCATCACAATCGCTGTGAAATCATTTGATCCTAG
TATTGTAGTTATTGGTGCGGAACCTGAACTCGCGTGTGGAGCTTTTCAAA
GCTTTCAAAAGAACGAAAGAGTCCCGGTTTCAGGCGCTTCCGAAACGGTC
GCAGATGGGTTGAAAACAGGGATCGGGAACCTTGGGTGGGAAGTTGTGTC
AAGATTGGTCGACAGAATTATCACAGTTTCTGAGGAAGAAATTTTGCAGG
CCACAAAGATGGTGTGGGAGTTTATGAAGATTGTCATTGAGCCGAGTTCT
GGAGTTGGGGTTGCAGCAGCTCGTTCAACAGAGTTCAGGAATCTGGGCTT
TAAACGTGTTGGAATAATACTGTGCGGAGGCAATGTGAACCTTGACAGCC
TTCCTTGGCAGAAGTAG
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protein sequence of Gchil7315.t1

>Gchil7315.t1 ID=Gchil7315.t1|Name=Gchil7315.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=339bp
MATETASLDLVREASTASGVSLYDIQQAAEVMKDKAHLTPVITSTLVNRS
LSSCQTEFYFKCENFQRTGSFKFRGAYYAISSLQSGVTKGTSVVTHSSGN
HAQAIAAAAALHDVRAHVVMPDNAAHVKVQAVKSYGGQITFCKPNSHDRM
KTAEQVRKIERGTLVHPFENPYVVAGQGTIGLELIHQAHNLEAIIVPIGG
GGLISGITIAVKSFDPSIVVIGAEPELACGAFQSFQKNERVPVSGASETV
ADGLKTGIGNLGWEVVSRLVDRIITVSEEEILQATKMVWEFMKIVIEPSS
GVGVAAARSTEFRNLGFKRVGIILCGGNVNLDSLPWQK*
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mRNA from alignment at tig00000007_pilon:97961..98977-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gchil7315.t1 ID=Gchil7315.t1|Name=Gchil7315.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1017bp|location=Sequence derived from alignment at tig00000007_pilon:97961..98977- (Gracilaria chilensis NLEC103_M9 male)
ATGGCAACAGAAACTGCTTCCCTGGACCTCGTCAGAGAAGCATCTACCGC
TTCTGGAGTGTCTCTGTATGACATTCAACAAGCCGCTGAGGTGATGAAAG
ACAAGGCACATCTCACCCCTGTAATCACCAGTACTCTTGTGAATCGGTCA
TTGTCTTCATGTCAAACTGAATTCTATTTCAAGTGCGAGAACTTTCAAAG
GACTGGCTCATTTAAGTTTCGTGGCGCGTACTATGCTATCTCTTCTCTTC
AAAGTGGCGTCACCAAGGGCACTTCCGTTGTCACTCATTCATCTGGAAAC
CATGCGCAAGCCATTGCAGCAGCTGCTGCCTTGCATGATGTCAGGGCCCA
TGTAGTCATGCCTGACAATGCGGCGCACGTGAAGGTTCAAGCTGTGAAGA
GCTACGGGGGCCAGATTACGTTTTGTAAACCCAATTCTCATGATAGAATG
AAGACGGCTGAGCAAGTGCGAAAGATTGAACGAGGAACTCTGGTGCACCC
ATTTGAAAACCCGTATGTTGTGGCTGGTCAAGGAACAATTGGTCTCGAAT
TAATTCATCAAGCCCACAATCTCGAAGCAATCATCGTTCCTATAGGAGGC
GGAGGACTCATTTCGGGCATCACAATCGCTGTGAAATCATTTGATCCTAG
TATTGTAGTTATTGGTGCGGAACCTGAACTCGCGTGTGGAGCTTTTCAAA
GCTTTCAAAAGAACGAAAGAGTCCCGGTTTCAGGCGCTTCCGAAACGGTC
GCAGATGGGTTGAAAACAGGGATCGGGAACCTTGGGTGGGAAGTTGTGTC
AAGATTGGTCGACAGAATTATCACAGTTTCTGAGGAAGAAATTTTGCAGG
CCACAAAGATGGTGTGGGAGTTTATGAAGATTGTCATTGAGCCGAGTTCT
GGAGTTGGGGTTGCAGCAGCTCGTTCAACAGAGTTCAGGAATCTGGGCTT
TAAACGTGTTGGAATAATACTGTGCGGAGGCAATGTGAACCTTGACAGCC
TTCCTTGGCAGAAGTAG
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Coding sequence (CDS) from alignment at tig00000007_pilon:97961..98977-

>Gchil7315.t1 ID=Gchil7315.t1|Name=Gchil7315.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=1017bp|location=Sequence derived from alignment at tig00000007_pilon:97961..98977- (Gracilaria chilensis NLEC103_M9 male)
ATGGCAACAGAAACTGCTTCCCTGGACCTCGTCAGAGAAGCATCTACCGC
TTCTGGAGTGTCTCTGTATGACATTCAACAAGCCGCTGAGGTGATGAAAG
ACAAGGCACATCTCACCCCTGTAATCACCAGTACTCTTGTGAATCGGTCA
TTGTCTTCATGTCAAACTGAATTCTATTTCAAGTGCGAGAACTTTCAAAG
GACTGGCTCATTTAAGTTTCGTGGCGCGTACTATGCTATCTCTTCTCTTC
AAAGTGGCGTCACCAAGGGCACTTCCGTTGTCACTCATTCATCTGGAAAC
CATGCGCAAGCCATTGCAGCAGCTGCTGCCTTGCATGATGTCAGGGCCCA
TGTAGTCATGCCTGACAATGCGGCGCACGTGAAGGTTCAAGCTGTGAAGA
GCTACGGGGGCCAGATTACGTTTTGTAAACCCAATTCTCATGATAGAATG
AAGACGGCTGAGCAAGTGCGAAAGATTGAACGAGGAACTCTGGTGCACCC
ATTTGAAAACCCGTATGTTGTGGCTGGTCAAGGAACAATTGGTCTCGAAT
TAATTCATCAAGCCCACAATCTCGAAGCAATCATCGTTCCTATAGGAGGC
GGAGGACTCATTTCGGGCATCACAATCGCTGTGAAATCATTTGATCCTAG
TATTGTAGTTATTGGTGCGGAACCTGAACTCGCGTGTGGAGCTTTTCAAA
GCTTTCAAAAGAACGAAAGAGTCCCGGTTTCAGGCGCTTCCGAAACGGTC
GCAGATGGGTTGAAAACAGGGATCGGGAACCTTGGGTGGGAAGTTGTGTC
AAGATTGGTCGACAGAATTATCACAGTTTCTGAGGAAGAAATTTTGCAGG
CCACAAAGATGGTGTGGGAGTTTATGAAGATTGTCATTGAGCCGAGTTCT
GGAGTTGGGGTTGCAGCAGCTCGTTCAACAGAGTTCAGGAATCTGGGCTT
TAAACGTGTTGGAATAATACTGTGCGGAGGCAATGTGAACCTTGACAGCC
TTCCTTGGCAGAAGTAG
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