Gchil3297.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gchil3297.t1
Unique Name	Gchil3297.t1
Type	mRNA
Organism	Gracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length	672

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
tig00000168_pilon	contig	tig00000168_pilon:63916..65931 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria chilensis NLEC103_M9 male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	1173264.KI913949_gene2297
PFAMs	ABC1
Max annot lvl	1117\|Cyanobacteria
Evalue	3.75e-153
EggNOG OGs	COG0661@1\|root,COG0661@2\|Bacteria,1G0X9@1117\|Cyanobacteria,1H92B@1150\|Oscillatoriales
Description	Unusual protein kinase
COG category	S

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gchil3297	Gchil3297	Gracilaria chilensis NLEC103_M9 male	gene	tig00000168_pilon 63916..65931 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil3297.t1.start1	Gchil3297.t1.start1	Gracilaria chilensis NLEC103_M9 male	start_codon	tig00000168_pilon 63916..63918 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil3297.t1.CDS1	Gchil3297.t1.CDS1	Gracilaria chilensis NLEC103_M9 male	CDS	tig00000168_pilon 63916..65931 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil3297.t1.exon1	Gchil3297.t1.exon1	Gracilaria chilensis NLEC103_M9 male	exon	tig00000168_pilon 63916..65931 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil3297.t1.stop1	Gchil3297.t1.stop1	Gracilaria chilensis NLEC103_M9 male	stop_codon	tig00000168_pilon 65929..65931 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil3297.t1	Gchil3297.t1	Gracilaria chilensis NLEC103_M9 male	polypeptide	tig00000168_pilon 63916..65931 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at tig00000168_pilon:63916..65931+
coding sequence from alignment at tig00000168_pilon:63916..65931+

mRNA sequence

>Gchil3297.t1 ID=Gchil3297.t1|Name=Gchil3297.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=672bp
MACPHGFPAFLSATPLAPLSSPLTKSPRCARMVLADRDRTAAAPASPVKT
HQPLPPGSYIGTPAPVRRGTLRLDYAQRFLDPNQPRNTPPLETRRSTAWQ
RGNTTSRSLAIWSFIGRILLQNWLDSKPLTYWMFNRTDAAVSDRRRKLAA
YSREQVLRLGPTMIKVGQLASTRADLLPPEVIDELSSLQDRVPAFSWQTA
EQLLKEQYGREISQVFAFFDKTPIAAASLGQVYRARLFTGEEVVVKVQRP
KLKRLFDLDLNALKIVAQYLQKSKKYGGNGRDWVAIYEEVAKVLYEEIDY
VREANNCQRFGDNFRNAAIWYVRVPKVYMQYTTTTVLCLQYLPGIKVTDK
NTLERAGLDLSLIANRLGDAFIRQVLDFAFFSSDPHPGNCAIGANETIIF
YDFGMMGELNPRIKERLIDILRGVIEKDAQVVMDALVDLGALVLPPDPTP
VRRAIQYFLDSVGSRPNRDQTVAAIGDDLYATAYDRPFRLPAASIFLLRA
LSTLEGLAKSLDDDFKFSEVALPYADEILRERTGGINSPQQVFRSLIASL
ITGRQDPVSRELTKRFVGVGTDAVRAAGRIERIEKTLSQLERGDIKLRSR
STETEKLLRKQYSLTESSNYLLSTGTTALAATQLYAAGSLEPAAAMAVFS
ALLGMTYVRKLAKINKSDKFR*

spliced messenger RNA

>Gchil3297.t1 ID=Gchil3297.t1|Name=Gchil3297.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=2016bp|location=Sequence derived from alignment at tig00000168_pilon:63916..65931+ (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGCGTGTCCGCATGGCTTTCCGGCGTTTTTGTCCGCCACTCCGCTGGC
GCCCTTGTCTTCACCTCTGACAAAGTCACCGCGATGCGCACGCATGGTGC
TCGCCGACCGAGACCGCACCGCTGCCGCGCCCGCCAGCCCTGTCAAAACG
CACCAGCCCTTGCCGCCTGGCTCGTACATCGGCACCCCGGCCCCTGTGCG
CCGTGGTACTCTTCGCCTGGATTATGCACAGCGTTTTCTCGACCCCAATC
AGCCTAGAAATACTCCGCCGCTGGAAACACGTCGCTCCACTGCCTGGCAG
CGCGGGAACACCACATCTCGCTCTCTCGCTATTTGGAGCTTCATTGGACG
CATCCTGTTACAAAATTGGCTCGACTCCAAGCCGCTTACTTATTGGATGT
TTAACAGAACTGATGCTGCCGTCAGCGACAGGCGGAGAAAGCTCGCTGCG
TACTCGAGAGAGCAAGTTTTGAGGCTCGGTCCTACTATGATCAAAGTTGG
TCAGCTGGCCAGCACACGTGCCGATCTCTTGCCTCCGGAGGTCATCGACG
AGCTTTCTTCGTTGCAGGACCGCGTACCAGCTTTTTCATGGCAGACTGCT
GAGCAATTGCTCAAGGAGCAGTATGGCCGCGAGATTTCGCAAGTGTTTGC
GTTTTTTGACAAAACTCCTATTGCTGCTGCCTCATTGGGTCAGGTGTATC
GTGCGCGACTTTTCACCGGGGAGGAGGTTGTCGTGAAAGTGCAGCGCCCC
AAGTTGAAGCGCTTGTTTGATCTTGATCTCAATGCGCTCAAGATCGTTGC
GCAGTACCTGCAAAAGTCAAAGAAGTACGGTGGAAATGGTAGGGATTGGG
TCGCCATTTACGAGGAGGTGGCCAAAGTCTTGTATGAGGAGATTGATTAC
GTGCGTGAGGCCAACAATTGCCAGCGCTTTGGCGACAACTTCAGAAATGC
TGCCATTTGGTATGTCAGAGTGCCCAAAGTGTATATGCAGTACACAACTA
CTACCGTTCTTTGTTTACAATATCTGCCCGGTATTAAAGTCACGGACAAG
AACACTTTGGAAAGGGCCGGACTGGATTTGTCACTTATTGCCAATCGACT
AGGCGATGCGTTCATTCGTCAGGTATTGGATTTTGCCTTCTTCAGCTCTG
ATCCACATCCTGGAAATTGCGCAATTGGTGCCAACGAAACGATCATCTTC
TATGACTTTGGAATGATGGGCGAACTGAACCCTCGCATCAAAGAGCGGCT
GATAGATATCTTGCGTGGAGTCATCGAAAAGGATGCCCAAGTGGTAATGG
ACGCATTAGTCGATCTGGGTGCTTTGGTATTGCCACCAGACCCAACTCCT
GTTCGACGCGCTATACAGTATTTCCTTGACTCTGTTGGTTCTCGTCCGAA
TCGAGATCAAACTGTTGCCGCGATCGGTGATGACTTGTATGCTACTGCAT
ATGACAGACCGTTCCGTTTGCCGGCGGCCAGTATCTTCTTGTTGAGAGCC
TTGTCCACATTGGAGGGTCTGGCAAAGAGCCTTGATGATGATTTCAAATT
CTCTGAAGTAGCGCTTCCATATGCGGATGAAATTCTCCGAGAGAGAACGG
GCGGTATCAACTCACCACAGCAGGTGTTCCGCTCTCTCATCGCCAGTCTG
ATAACTGGTCGCCAAGATCCCGTTTCTAGGGAATTAACAAAACGGTTTGT
TGGTGTTGGGACCGACGCTGTGCGGGCGGCTGGTAGAATTGAAAGGATTG
AGAAGACTCTCTCACAGCTGGAACGTGGTGACATCAAGCTACGGTCGCGA
TCGACGGAAACTGAGAAATTGCTTCGAAAACAATACTCTTTGACGGAAAG
CTCTAACTATCTTTTGTCTACCGGCACCACAGCACTGGCTGCAACGCAAT
TGTACGCTGCCGGAAGTCTTGAGCCGGCTGCTGCGATGGCTGTGTTTTCT
GCGTTGCTGGGTATGACGTACGTGAGAAAACTGGCAAAAATCAACAAATC
TGACAAGTTTAGGTAA

protein sequence of Gchil3297.t1

>Gchil3297.t1 ID=Gchil3297.t1|Name=Gchil3297.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=672bp
MACPHGFPAFLSATPLAPLSSPLTKSPRCARMVLADRDRTAAAPASPVKT
HQPLPPGSYIGTPAPVRRGTLRLDYAQRFLDPNQPRNTPPLETRRSTAWQ
RGNTTSRSLAIWSFIGRILLQNWLDSKPLTYWMFNRTDAAVSDRRRKLAA
YSREQVLRLGPTMIKVGQLASTRADLLPPEVIDELSSLQDRVPAFSWQTA
EQLLKEQYGREISQVFAFFDKTPIAAASLGQVYRARLFTGEEVVVKVQRP
KLKRLFDLDLNALKIVAQYLQKSKKYGGNGRDWVAIYEEVAKVLYEEIDY
VREANNCQRFGDNFRNAAIWYVRVPKVYMQYTTTTVLCLQYLPGIKVTDK
NTLERAGLDLSLIANRLGDAFIRQVLDFAFFSSDPHPGNCAIGANETIIF
YDFGMMGELNPRIKERLIDILRGVIEKDAQVVMDALVDLGALVLPPDPTP
VRRAIQYFLDSVGSRPNRDQTVAAIGDDLYATAYDRPFRLPAASIFLLRA
LSTLEGLAKSLDDDFKFSEVALPYADEILRERTGGINSPQQVFRSLIASL
ITGRQDPVSRELTKRFVGVGTDAVRAAGRIERIEKTLSQLERGDIKLRSR
STETEKLLRKQYSLTESSNYLLSTGTTALAATQLYAAGSLEPAAAMAVFS
ALLGMTYVRKLAKINKSDKFR*

mRNA from alignment at tig00000168_pilon:63916..65931+

Legend: start_codonpolypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gchil3297.t1 ID=Gchil3297.t1|Name=Gchil3297.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=2016bp|location=Sequence derived from alignment at tig00000168_pilon:63916..65931+ (Gracilaria chilensis NLEC103_M9 male)
ATGGCGTGTCCGCATGGCTTTCCGGCGTTTTTGTCCGCCACTCCGCTGGC
GCCCTTGTCTTCACCTCTGACAAAGTCACCGCGATGCGCACGCATGGTGC
TCGCCGACCGAGACCGCACCGCTGCCGCGCCCGCCAGCCCTGTCAAAACG
CACCAGCCCTTGCCGCCTGGCTCGTACATCGGCACCCCGGCCCCTGTGCG
CCGTGGTACTCTTCGCCTGGATTATGCACAGCGTTTTCTCGACCCCAATC
AGCCTAGAAATACTCCGCCGCTGGAAACACGTCGCTCCACTGCCTGGCAG
CGCGGGAACACCACATCTCGCTCTCTCGCTATTTGGAGCTTCATTGGACG
CATCCTGTTACAAAATTGGCTCGACTCCAAGCCGCTTACTTATTGGATGT
TTAACAGAACTGATGCTGCCGTCAGCGACAGGCGGAGAAAGCTCGCTGCG
TACTCGAGAGAGCAAGTTTTGAGGCTCGGTCCTACTATGATCAAAGTTGG
TCAGCTGGCCAGCACACGTGCCGATCTCTTGCCTCCGGAGGTCATCGACG
AGCTTTCTTCGTTGCAGGACCGCGTACCAGCTTTTTCATGGCAGACTGCT
GAGCAATTGCTCAAGGAGCAGTATGGCCGCGAGATTTCGCAAGTGTTTGC
GTTTTTTGACAAAACTCCTATTGCTGCTGCCTCATTGGGTCAGGTGTATC
GTGCGCGACTTTTCACCGGGGAGGAGGTTGTCGTGAAAGTGCAGCGCCCC
AAGTTGAAGCGCTTGTTTGATCTTGATCTCAATGCGCTCAAGATCGTTGC
GCAGTACCTGCAAAAGTCAAAGAAGTACGGTGGAAATGGTAGGGATTGGG
TCGCCATTTACGAGGAGGTGGCCAAAGTCTTGTATGAGGAGATTGATTAC
GTGCGTGAGGCCAACAATTGCCAGCGCTTTGGCGACAACTTCAGAAATGC
TGCCATTTGGTATGTCAGAGTGCCCAAAGTGTATATGCAGTACACAACTA
CTACCGTTCTTTGTTTACAATATCTGCCCGGTATTAAAGTCACGGACAAG
AACACTTTGGAAAGGGCCGGACTGGATTTGTCACTTATTGCCAATCGACT
AGGCGATGCGTTCATTCGTCAGGTATTGGATTTTGCCTTCTTCAGCTCTG
ATCCACATCCTGGAAATTGCGCAATTGGTGCCAACGAAACGATCATCTTC
TATGACTTTGGAATGATGGGCGAACTGAACCCTCGCATCAAAGAGCGGCT
GATAGATATCTTGCGTGGAGTCATCGAAAAGGATGCCCAAGTGGTAATGG
ACGCATTAGTCGATCTGGGTGCTTTGGTATTGCCACCAGACCCAACTCCT
GTTCGACGCGCTATACAGTATTTCCTTGACTCTGTTGGTTCTCGTCCGAA
TCGAGATCAAACTGTTGCCGCGATCGGTGATGACTTGTATGCTACTGCAT
ATGACAGACCGTTCCGTTTGCCGGCGGCCAGTATCTTCTTGTTGAGAGCC
TTGTCCACATTGGAGGGTCTGGCAAAGAGCCTTGATGATGATTTCAAATT
CTCTGAAGTAGCGCTTCCATATGCGGATGAAATTCTCCGAGAGAGAACGG
GCGGTATCAACTCACCACAGCAGGTGTTCCGCTCTCTCATCGCCAGTCTG
ATAACTGGTCGCCAAGATCCCGTTTCTAGGGAATTAACAAAACGGTTTGT
TGGTGTTGGGACCGACGCTGTGCGGGCGGCTGGTAGAATTGAAAGGATTG
AGAAGACTCTCTCACAGCTGGAACGTGGTGACATCAAGCTACGGTCGCGA
TCGACGGAAACTGAGAAATTGCTTCGAAAACAATACTCTTTGACGGAAAG
CTCTAACTATCTTTTGTCTACCGGCACCACAGCACTGGCTGCAACGCAAT
TGTACGCTGCCGGAAGTCTTGAGCCGGCTGCTGCGATGGCTGTGTTTTCT
GCGTTGCTGGGTATGACGTACGTGAGAAAACTGGCAAAAATCAACAAATC
TGACAAGTTTAGGTAA

Coding sequence (CDS) from alignment at tig00000168_pilon:63916..65931+

>Gchil3297.t1 ID=Gchil3297.t1|Name=Gchil3297.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=2016bp|location=Sequence derived from alignment at tig00000168_pilon:63916..65931+ (Gracilaria chilensis NLEC103_M9 male)
ATGGCGTGTCCGCATGGCTTTCCGGCGTTTTTGTCCGCCACTCCGCTGGC
GCCCTTGTCTTCACCTCTGACAAAGTCACCGCGATGCGCACGCATGGTGC
TCGCCGACCGAGACCGCACCGCTGCCGCGCCCGCCAGCCCTGTCAAAACG
CACCAGCCCTTGCCGCCTGGCTCGTACATCGGCACCCCGGCCCCTGTGCG
CCGTGGTACTCTTCGCCTGGATTATGCACAGCGTTTTCTCGACCCCAATC
AGCCTAGAAATACTCCGCCGCTGGAAACACGTCGCTCCACTGCCTGGCAG
CGCGGGAACACCACATCTCGCTCTCTCGCTATTTGGAGCTTCATTGGACG
CATCCTGTTACAAAATTGGCTCGACTCCAAGCCGCTTACTTATTGGATGT
TTAACAGAACTGATGCTGCCGTCAGCGACAGGCGGAGAAAGCTCGCTGCG
TACTCGAGAGAGCAAGTTTTGAGGCTCGGTCCTACTATGATCAAAGTTGG
TCAGCTGGCCAGCACACGTGCCGATCTCTTGCCTCCGGAGGTCATCGACG
AGCTTTCTTCGTTGCAGGACCGCGTACCAGCTTTTTCATGGCAGACTGCT
GAGCAATTGCTCAAGGAGCAGTATGGCCGCGAGATTTCGCAAGTGTTTGC
GTTTTTTGACAAAACTCCTATTGCTGCTGCCTCATTGGGTCAGGTGTATC
GTGCGCGACTTTTCACCGGGGAGGAGGTTGTCGTGAAAGTGCAGCGCCCC
AAGTTGAAGCGCTTGTTTGATCTTGATCTCAATGCGCTCAAGATCGTTGC
GCAGTACCTGCAAAAGTCAAAGAAGTACGGTGGAAATGGTAGGGATTGGG
TCGCCATTTACGAGGAGGTGGCCAAAGTCTTGTATGAGGAGATTGATTAC
GTGCGTGAGGCCAACAATTGCCAGCGCTTTGGCGACAACTTCAGAAATGC
TGCCATTTGGTATGTCAGAGTGCCCAAAGTGTATATGCAGTACACAACTA
CTACCGTTCTTTGTTTACAATATCTGCCCGGTATTAAAGTCACGGACAAG
AACACTTTGGAAAGGGCCGGACTGGATTTGTCACTTATTGCCAATCGACT
AGGCGATGCGTTCATTCGTCAGGTATTGGATTTTGCCTTCTTCAGCTCTG
ATCCACATCCTGGAAATTGCGCAATTGGTGCCAACGAAACGATCATCTTC
TATGACTTTGGAATGATGGGCGAACTGAACCCTCGCATCAAAGAGCGGCT
GATAGATATCTTGCGTGGAGTCATCGAAAAGGATGCCCAAGTGGTAATGG
ACGCATTAGTCGATCTGGGTGCTTTGGTATTGCCACCAGACCCAACTCCT
GTTCGACGCGCTATACAGTATTTCCTTGACTCTGTTGGTTCTCGTCCGAA
TCGAGATCAAACTGTTGCCGCGATCGGTGATGACTTGTATGCTACTGCAT
ATGACAGACCGTTCCGTTTGCCGGCGGCCAGTATCTTCTTGTTGAGAGCC
TTGTCCACATTGGAGGGTCTGGCAAAGAGCCTTGATGATGATTTCAAATT
CTCTGAAGTAGCGCTTCCATATGCGGATGAAATTCTCCGAGAGAGAACGG
GCGGTATCAACTCACCACAGCAGGTGTTCCGCTCTCTCATCGCCAGTCTG
ATAACTGGTCGCCAAGATCCCGTTTCTAGGGAATTAACAAAACGGTTTGT
TGGTGTTGGGACCGACGCTGTGCGGGCGGCTGGTAGAATTGAAAGGATTG
AGAAGACTCTCTCACAGCTGGAACGTGGTGACATCAAGCTACGGTCGCGA
TCGACGGAAACTGAGAAATTGCTTCGAAAACAATACTCTTTGACGGAAAG
CTCTAACTATCTTTTGTCTACCGGCACCACAGCACTGGCTGCAACGCAAT
TGTACGCTGCCGGAAGTCTTGAGCCGGCTGCTGCGATGGCTGTGTTTTCT
GCGTTGCTGGGTATGACGTACGTGAGAAAACTGGCAAAAATCAACAAATC
TGACAAGTTTAGGTAA