Gchil10498.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGchil10498.t1
Unique NameGchil10498.t1
TypemRNA
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length267
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000159_piloncontigtig00000159_pilon:271022..271822 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil10498Gchil10498Gracilaria chilensis NLEC103_M9 malegenetig00000159_pilon 271022..271822 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil10498.t1.stop1Gchil10498.t1.stop1Gracilaria chilensis NLEC103_M9 malestop_codontig00000159_pilon 271022..271024 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil10498.t1.CDS1Gchil10498.t1.CDS1Gracilaria chilensis NLEC103_M9 maleCDStig00000159_pilon 271022..271822 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil10498.t1.exon1Gchil10498.t1.exon1Gracilaria chilensis NLEC103_M9 maleexontig00000159_pilon 271022..271822 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil10498.t1.start1Gchil10498.t1.start1Gracilaria chilensis NLEC103_M9 malestart_codontig00000159_pilon 271820..271822 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil10498.t1Gchil10498.t1Gracilaria chilensis NLEC103_M9 malepolypeptidetig00000159_pilon 271022..271822 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gchil10498.t1 ID=Gchil10498.t1|Name=Gchil10498.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=267bp
MYSGCFCFPVLCIGKKSTVLLPELAALNESCPNPGEAKAILTPEASDIEK
LRHPKNTSFLHSESSKKNIDQLAGGKRRKKDRFASRYVMVMGFMTSKSTC
TEEEAAIVLKPLQVPRTRVLKISRENGLQIAKDTFVHGEAETRVVAAFER
YLRYQLHTLVLNTGGLMQTNGEGVPRFRNCVIISKNTDGTVIIGLSKCVH
GKDVIHVLRENIIDIYVMLHNLLRFRLPFETIDSAYALTRGDFRPRTYGV
SHEHYLRAVLRHTKKD*
back to top

spliced messenger RNA

>Gchil10498.t1 ID=Gchil10498.t1|Name=Gchil10498.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=801bp|location=Sequence derived from alignment at tig00000159_pilon:271022..271822- (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGTATAGTGGATGCTTTTGCTTCCCTGTATTATGCATCGGAAAAAAATC
AACCGTACTGCTACCAGAGCTGGCAGCCTTAAACGAGAGCTGTCCAAATC
CTGGAGAAGCAAAAGCAATTTTAACACCGGAGGCCTCTGACATTGAGAAG
CTACGCCATCCAAAAAACACTAGCTTTCTACATTCGGAATCAAGTAAGAA
AAATATTGATCAACTCGCCGGTGGGAAAAGAAGAAAGAAGGACAGGTTCG
CAAGCCGTTATGTTATGGTTATGGGTTTTATGACATCGAAATCGACCTGC
ACTGAAGAAGAAGCTGCTATTGTCTTGAAACCTCTTCAAGTGCCAAGAAC
TCGTGTGTTAAAGATTTCAAGGGAGAATGGTTTGCAGATAGCAAAAGACA
CTTTTGTTCATGGGGAAGCCGAGACAAGAGTCGTTGCGGCGTTTGAAAGA
TACTTGCGATATCAACTGCACACCTTGGTTTTGAACACCGGCGGACTCAT
GCAGACTAATGGGGAGGGTGTGCCGCGTTTCAGAAATTGTGTCATTATTT
CCAAAAACACAGATGGTACCGTCATTATCGGTCTTTCAAAGTGTGTACAT
GGAAAAGATGTGATTCATGTACTAAGGGAGAACATTATTGACATCTATGT
GATGCTTCATAATCTGTTGAGGTTCAGACTACCATTCGAGACAATTGATT
CTGCATACGCGTTAACTAGGGGCGACTTCAGGCCCAGAACATACGGCGTT
TCACATGAACACTACCTCAGAGCAGTTCTACGTCACACAAAAAAAGATTG
A
back to top

protein sequence of Gchil10498.t1

>Gchil10498.t1 ID=Gchil10498.t1|Name=Gchil10498.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=267bp
MYSGCFCFPVLCIGKKSTVLLPELAALNESCPNPGEAKAILTPEASDIEK
LRHPKNTSFLHSESSKKNIDQLAGGKRRKKDRFASRYVMVMGFMTSKSTC
TEEEAAIVLKPLQVPRTRVLKISRENGLQIAKDTFVHGEAETRVVAAFER
YLRYQLHTLVLNTGGLMQTNGEGVPRFRNCVIISKNTDGTVIIGLSKCVH
GKDVIHVLRENIIDIYVMLHNLLRFRLPFETIDSAYALTRGDFRPRTYGV
SHEHYLRAVLRHTKKD*
back to top

mRNA from alignment at tig00000159_pilon:271022..271822-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gchil10498.t1 ID=Gchil10498.t1|Name=Gchil10498.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=801bp|location=Sequence derived from alignment at tig00000159_pilon:271022..271822- (Gracilaria chilensis NLEC103_M9 male)
ATGTATAGTGGATGCTTTTGCTTCCCTGTATTATGCATCGGAAAAAAATC
AACCGTACTGCTACCAGAGCTGGCAGCCTTAAACGAGAGCTGTCCAAATC
CTGGAGAAGCAAAAGCAATTTTAACACCGGAGGCCTCTGACATTGAGAAG
CTACGCCATCCAAAAAACACTAGCTTTCTACATTCGGAATCAAGTAAGAA
AAATATTGATCAACTCGCCGGTGGGAAAAGAAGAAAGAAGGACAGGTTCG
CAAGCCGTTATGTTATGGTTATGGGTTTTATGACATCGAAATCGACCTGC
ACTGAAGAAGAAGCTGCTATTGTCTTGAAACCTCTTCAAGTGCCAAGAAC
TCGTGTGTTAAAGATTTCAAGGGAGAATGGTTTGCAGATAGCAAAAGACA
CTTTTGTTCATGGGGAAGCCGAGACAAGAGTCGTTGCGGCGTTTGAAAGA
TACTTGCGATATCAACTGCACACCTTGGTTTTGAACACCGGCGGACTCAT
GCAGACTAATGGGGAGGGTGTGCCGCGTTTCAGAAATTGTGTCATTATTT
CCAAAAACACAGATGGTACCGTCATTATCGGTCTTTCAAAGTGTGTACAT
GGAAAAGATGTGATTCATGTACTAAGGGAGAACATTATTGACATCTATGT
GATGCTTCATAATCTGTTGAGGTTCAGACTACCATTCGAGACAATTGATT
CTGCATACGCGTTAACTAGGGGCGACTTCAGGCCCAGAACATACGGCGTT
TCACATGAACACTACCTCAGAGCAGTTCTACGTCACACAAAAAAAGATTG
A
back to top

Coding sequence (CDS) from alignment at tig00000159_pilon:271022..271822-

>Gchil10498.t1 ID=Gchil10498.t1|Name=Gchil10498.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=801bp|location=Sequence derived from alignment at tig00000159_pilon:271022..271822- (Gracilaria chilensis NLEC103_M9 male)
ATGTATAGTGGATGCTTTTGCTTCCCTGTATTATGCATCGGAAAAAAATC
AACCGTACTGCTACCAGAGCTGGCAGCCTTAAACGAGAGCTGTCCAAATC
CTGGAGAAGCAAAAGCAATTTTAACACCGGAGGCCTCTGACATTGAGAAG
CTACGCCATCCAAAAAACACTAGCTTTCTACATTCGGAATCAAGTAAGAA
AAATATTGATCAACTCGCCGGTGGGAAAAGAAGAAAGAAGGACAGGTTCG
CAAGCCGTTATGTTATGGTTATGGGTTTTATGACATCGAAATCGACCTGC
ACTGAAGAAGAAGCTGCTATTGTCTTGAAACCTCTTCAAGTGCCAAGAAC
TCGTGTGTTAAAGATTTCAAGGGAGAATGGTTTGCAGATAGCAAAAGACA
CTTTTGTTCATGGGGAAGCCGAGACAAGAGTCGTTGCGGCGTTTGAAAGA
TACTTGCGATATCAACTGCACACCTTGGTTTTGAACACCGGCGGACTCAT
GCAGACTAATGGGGAGGGTGTGCCGCGTTTCAGAAATTGTGTCATTATTT
CCAAAAACACAGATGGTACCGTCATTATCGGTCTTTCAAAGTGTGTACAT
GGAAAAGATGTGATTCATGTACTAAGGGAGAACATTATTGACATCTATGT
GATGCTTCATAATCTGTTGAGGTTCAGACTACCATTCGAGACAATTGATT
CTGCATACGCGTTAACTAGGGGCGACTTCAGGCCCAGAACATACGGCGTT
TCACATGAACACTACCTCAGAGCAGTTCTACGTCACACAAAAAAAGATTG
A
back to top