Gchil10561.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGchil10561.t1
Unique NameGchil10561.t1
TypemRNA
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length68
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000159_piloncontigtig00000159_pilon:711753..712118 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog130081.XP_005707204.1
Preferred nameSEC61G
PFAMsSecE
Max annot lvl2759|Eukaryota
KEGG koko:K01262,ko:K07342
KEGG TC3.A.5.7,3.A.5.8,3.A.5.9
KEGG Pathwayko03060,ko04141,ko04145,ko05110,map03060,map04141,map04145,map05110
KEGG ModuleM00401
GOsGO:0000003,GO:0001555,GO:0003006,GO:0003674,GO:0005215,GO:0005575,GO:0005623,GO:0006810,GO:0006886,GO:0007276,GO:0007281,GO:0007292,GO:0008104,GO:0008150,GO:0008320,GO:0008565,GO:0009987,GO:0009994,GO:0015031,GO:0015399,GO:0015405,GO:0015450,GO:0015833,GO:0016049,GO:0019953,GO:0022412,GO:0022414,GO:0022804,GO:0022857,GO:0022884,GO:0030154,GO:0030728,GO:0032501,GO:0032502,GO:0032504,GO:0033036,GO:0034613,GO:0040007,GO:0042886,GO:0042887,GO:0044703,GO:0045184,GO:0046907,GO:0048468,GO:0048477,GO:0048588,GO:0048589,GO:0048599,GO:0048609,GO:0048856,GO:0048869,GO:0051179,GO:0051234,GO:0051641,GO:0051649,GO:0051704,GO:0055085,GO:0070727,GO:0071702,GO:0071705,GO:0071806,GO:1904680
Evalue1.74e-25
EggNOG OGsCOG2443@1|root,KOG3498@2759|Eukaryota
EC3.4.11.9
DescriptionP-P-bond-hydrolysis-driven protein transmembrane transporter activity
COG categoryU
BRITEko00000,ko00001,ko00002,ko01000,ko01002,ko02044
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil10561Gchil10561Gracilaria chilensis NLEC103_M9 malegenetig00000159_pilon 711753..712118 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil10561.t1Gchil10561.t1Gracilaria chilensis NLEC103_M9 malepolypeptidetig00000159_pilon 711753..712118 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil10561.t1.start1Gchil10561.t1.start1Gracilaria chilensis NLEC103_M9 malestart_codontig00000159_pilon 711753..711755 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil10561.t1.CDS1Gchil10561.t1.CDS1Gracilaria chilensis NLEC103_M9 maleCDStig00000159_pilon 711753..711846 +
Gchil10561.t1.CDS2Gchil10561.t1.CDS2Gracilaria chilensis NLEC103_M9 maleCDStig00000159_pilon 711929..712033 +
Gchil10561.t1.CDS3Gchil10561.t1.CDS3Gracilaria chilensis NLEC103_M9 maleCDStig00000159_pilon 712114..712118 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil10561.t1.exon1Gchil10561.t1.exon1Gracilaria chilensis NLEC103_M9 maleexontig00000159_pilon 711753..711846 +
Gchil10561.t1.exon2Gchil10561.t1.exon2Gracilaria chilensis NLEC103_M9 maleexontig00000159_pilon 711929..712033 +
Gchil10561.t1.exon3Gchil10561.t1.exon3Gracilaria chilensis NLEC103_M9 maleexontig00000159_pilon 712114..712118 +


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil10561.t1.intron1Gchil10561.t1.intron1Gracilaria chilensis NLEC103_M9 maleintrontig00000159_pilon 711847..711928 +
Gchil10561.t1.intron2Gchil10561.t1.intron2Gracilaria chilensis NLEC103_M9 maleintrontig00000159_pilon 712034..712113 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil10561.t1.stop1Gchil10561.t1.stop1Gracilaria chilensis NLEC103_M9 malestop_codontig00000159_pilon 712116..712118 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gchil10561.t1 ID=Gchil10561.t1|Name=Gchil10561.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=68bp
MDAARSVSEPLHGFMIDSVRLVRRCNKPDRKEFLKISQATLIGFAVMGFI
GFFVRLIHIPINSILLG*
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spliced messenger RNA

>Gchil10561.t1 ID=Gchil10561.t1|Name=Gchil10561.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=204bp|location=Sequence derived from alignment at tig00000159_pilon:711753..712118+ (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGACGCAGCACGAAGCGTGAGTGAGCCCCTACACGGATTCATGATTGA
TTCCGTCCGATTGGTGCGAAGATGCAACAAACCAGACCGAAAAGAGTTCC
TGAAGATCTCACAGGCAACTTTGATTGGGTTCGCTGTCATGGGATTTATT
GGCTTTTTCGTCCGGTTGATTCACATCCCCATCAACAGCATTCTATTAGG
TTGA
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protein sequence of Gchil10561.t1

>Gchil10561.t1 ID=Gchil10561.t1|Name=Gchil10561.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=68bp
MDAARSVSEPLHGFMIDSVRLVRRCNKPDRKEFLKISQATLIGFAVMGFI
GFFVRLIHIPINSILLG*
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mRNA from alignment at tig00000159_pilon:711753..712118+

Legend: polypeptidestart_codonCDSexonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gchil10561.t1 ID=Gchil10561.t1|Name=Gchil10561.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=366bp|location=Sequence derived from alignment at tig00000159_pilon:711753..712118+ (Gracilaria chilensis NLEC103_M9 male)
ATGGACGCAGCACGAAGCGTGAGTGAGCCCCTACACGGATTCATGATTGA
TTCCGTCCGATTGGTGCGAAGATGCAACAAACCAGACCGAAAAGGTACGT
CACTTGTAAAAGTCGGCTTCCGTAAATTAAACGTTCTGCATGTCTCGTTC
TAACTCTCCTTCTTGCCTATTTTCAGAGTTCCTGAAGATCTCACAGGCAA
CTTTGATTGGGTTCGCTGTCATGGGATTTATTGGCTTTTTCGTCCGGTTG
ATTCACATCCCCATCAACAGCATTCTATTAGGTTAGTACCACAGACAACC
ATTCACGCTTGTGTTCTGGATGTCGAACAACTCAAGTTTCCAACAATCAG
CTATCCTACAGGTTGA
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Coding sequence (CDS) from alignment at tig00000159_pilon:711753..712118+

>Gchil10561.t1 ID=Gchil10561.t1|Name=Gchil10561.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=204bp|location=Sequence derived from alignment at tig00000159_pilon:711753..712118+ (Gracilaria chilensis NLEC103_M9 male)
ATGGACGCAGCACGAAGCGTGAGTGAGCCCCTACACGGATTCATGATTGA
TTCCGTCCGATTGGTGCGAAGATGCAACAAACCAGACCGAAAAGAGTTCC
TGAAGATCTCACAGGCAACTTTGATTGGGTTCGCTGTCATGGGATTTATT
GGCTTTTTCGTCCGGTTGATTCACATCCCCATCAACAGCATTCTATTAGG
TTGA
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