Gchil7555.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGchil7555.t1
Unique NameGchil7555.t1
TypemRNA
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length523
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000007_piloncontigtig00000007_pilon:1877938..1879506 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil7555Gchil7555Gracilaria chilensis NLEC103_M9 malegenetig00000007_pilon 1877938..1879506 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil7555.t1.start1Gchil7555.t1.start1Gracilaria chilensis NLEC103_M9 malestart_codontig00000007_pilon 1877938..1877940 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil7555.t1.CDS1Gchil7555.t1.CDS1Gracilaria chilensis NLEC103_M9 maleCDStig00000007_pilon 1877938..1879506 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil7555.t1.exon1Gchil7555.t1.exon1Gracilaria chilensis NLEC103_M9 maleexontig00000007_pilon 1877938..1879506 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil7555.t1.stop1Gchil7555.t1.stop1Gracilaria chilensis NLEC103_M9 malestop_codontig00000007_pilon 1879504..1879506 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil7555.t1Gchil7555.t1Gracilaria chilensis NLEC103_M9 malepolypeptidetig00000007_pilon 1877938..1879506 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gchil7555.t1 ID=Gchil7555.t1|Name=Gchil7555.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=523bp
MSVIRGHTATHRLSSTEAVSRRKSTRTRRIPGQWWKGGADLPVSKPQNAI
KIRSSTLPNNIQRCAKRGVSNTSIFKGLELLKKDIPRPSLSGNKSIVDDE
DRHGTINSRKTQKCQGTSQRRFLNAKEQLLSNKMAISSGETSLSRTADAG
NDAFDLEGHCKVSSSATNRNEQTIVRVPGETGNRLTDKYKIIGGKHITES
RVEQNNSTLGRTSSIQVSSGLCSAPNDLNIFNGNLLRDASSSSRPNSDVT
KASGVVMSEEVLSRHHATRKLTPESGSISHNSAHEVKTYGESRAPDSFLK
EKEIDDKSGQSFTAEPQRVSDDEGIKAGTVTHEIPSSSRPSPKIDCLNRN
TDFDQFEEPGPVNVVEQCIDDKVYDSSSVQTSKGCSNCRLQVCTCQRRLY
HQHEGTVAAPSVVSFKVRRGSKIHYMTENVSGEIKFGIRTCSDGILVGEL
TLYPQSATGPRRTGGRREWYILLRGFLILEVEESTIHLRQGDEVEFEEDT
VFQMRNPCLQSTDLLCFLFSPE*
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spliced messenger RNA

>Gchil7555.t1 ID=Gchil7555.t1|Name=Gchil7555.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1569bp|location=Sequence derived from alignment at tig00000007_pilon:1877938..1879506+ (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGAGCGTAATTCGGGGGCACACAGCCACACATCGCCTCAGCTCTACAGA
AGCCGTGTCCAGACGGAAGTCGACTAGAACTAGAAGGATTCCAGGTCAGT
GGTGGAAAGGAGGTGCTGATCTCCCCGTATCCAAGCCCCAAAACGCCATC
AAGATTAGGTCATCCACGCTCCCAAATAATATTCAAAGATGTGCAAAGCG
GGGTGTGTCAAATACCTCTATATTCAAGGGCCTTGAGCTGCTCAAGAAAG
ATATTCCAAGACCGTCCTTGTCGGGAAACAAAAGCATCGTGGATGACGAA
GACAGGCACGGAACAATCAATTCCAGAAAGACACAGAAATGCCAGGGAAC
ATCACAACGCCGTTTTTTAAATGCCAAAGAGCAACTGCTGTCGAACAAAA
TGGCTATTTCTAGTGGTGAAACTTCCCTATCCCGTACAGCAGATGCTGGT
AATGATGCATTTGACCTAGAGGGACATTGCAAAGTATCATCCTCGGCGAC
AAATCGAAATGAGCAAACCATCGTGCGCGTACCAGGAGAAACTGGAAATC
GACTTACCGACAAATATAAGATTATTGGAGGGAAGCACATCACAGAGTCG
AGAGTAGAACAAAACAATTCAACGCTAGGCAGAACAAGCTCCATCCAAGT
TTCTTCTGGCTTGTGTTCAGCACCTAATGATTTAAACATATTCAATGGAA
ACCTCCTGCGAGACGCATCCAGCTCTTCTCGGCCAAACTCAGACGTTACG
AAAGCAAGCGGTGTGGTAATGAGCGAAGAAGTACTTTCTAGACATCATGC
AACAAGAAAACTAACACCTGAAAGTGGAAGTATTAGTCATAATTCGGCTC
ACGAAGTCAAAACTTATGGTGAGTCTCGAGCTCCTGACAGTTTTCTGAAA
GAGAAGGAGATCGACGACAAAAGCGGTCAAAGCTTTACGGCAGAACCACA
ACGAGTATCTGATGACGAAGGCATCAAAGCAGGGACGGTGACACATGAGA
TCCCGAGTTCGTCAAGACCGTCTCCAAAAATTGACTGTTTGAATCGTAAC
ACGGACTTTGATCAATTTGAAGAGCCGGGACCGGTGAACGTTGTAGAACA
ATGCATCGACGATAAAGTTTACGACAGCTCAAGCGTGCAAACTTCAAAAG
GCTGTTCCAACTGTCGTTTGCAGGTATGTACCTGTCAGCGAAGGCTCTAT
CATCAACACGAGGGAACAGTAGCAGCACCATCTGTAGTAAGCTTTAAAGT
TCGGCGTGGATCTAAGATACATTACATGACCGAGAATGTCTCGGGCGAGA
TTAAGTTCGGAATCAGGACTTGTAGCGATGGAATTTTGGTCGGAGAGCTT
ACTTTGTATCCTCAATCAGCAACAGGCCCCCGACGGACAGGTGGGCGGAG
AGAGTGGTATATACTATTACGAGGATTCCTTATCCTCGAAGTGGAAGAAT
CCACAATCCATTTGCGACAGGGCGACGAAGTCGAATTCGAAGAAGACACT
GTATTTCAGATGCGCAACCCATGCCTTCAGTCCACGGACCTGCTCTGTTT
TCTGTTTTCCCCAGAGTAA
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protein sequence of Gchil7555.t1

>Gchil7555.t1 ID=Gchil7555.t1|Name=Gchil7555.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=523bp
MSVIRGHTATHRLSSTEAVSRRKSTRTRRIPGQWWKGGADLPVSKPQNAI
KIRSSTLPNNIQRCAKRGVSNTSIFKGLELLKKDIPRPSLSGNKSIVDDE
DRHGTINSRKTQKCQGTSQRRFLNAKEQLLSNKMAISSGETSLSRTADAG
NDAFDLEGHCKVSSSATNRNEQTIVRVPGETGNRLTDKYKIIGGKHITES
RVEQNNSTLGRTSSIQVSSGLCSAPNDLNIFNGNLLRDASSSSRPNSDVT
KASGVVMSEEVLSRHHATRKLTPESGSISHNSAHEVKTYGESRAPDSFLK
EKEIDDKSGQSFTAEPQRVSDDEGIKAGTVTHEIPSSSRPSPKIDCLNRN
TDFDQFEEPGPVNVVEQCIDDKVYDSSSVQTSKGCSNCRLQVCTCQRRLY
HQHEGTVAAPSVVSFKVRRGSKIHYMTENVSGEIKFGIRTCSDGILVGEL
TLYPQSATGPRRTGGRREWYILLRGFLILEVEESTIHLRQGDEVEFEEDT
VFQMRNPCLQSTDLLCFLFSPE*
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mRNA from alignment at tig00000007_pilon:1877938..1879506+

Legend: start_codonpolypeptideCDSexonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gchil7555.t1 ID=Gchil7555.t1|Name=Gchil7555.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1569bp|location=Sequence derived from alignment at tig00000007_pilon:1877938..1879506+ (Gracilaria chilensis NLEC103_M9 male)
ATGAGCGTAATTCGGGGGCACACAGCCACACATCGCCTCAGCTCTACAGA
AGCCGTGTCCAGACGGAAGTCGACTAGAACTAGAAGGATTCCAGGTCAGT
GGTGGAAAGGAGGTGCTGATCTCCCCGTATCCAAGCCCCAAAACGCCATC
AAGATTAGGTCATCCACGCTCCCAAATAATATTCAAAGATGTGCAAAGCG
GGGTGTGTCAAATACCTCTATATTCAAGGGCCTTGAGCTGCTCAAGAAAG
ATATTCCAAGACCGTCCTTGTCGGGAAACAAAAGCATCGTGGATGACGAA
GACAGGCACGGAACAATCAATTCCAGAAAGACACAGAAATGCCAGGGAAC
ATCACAACGCCGTTTTTTAAATGCCAAAGAGCAACTGCTGTCGAACAAAA
TGGCTATTTCTAGTGGTGAAACTTCCCTATCCCGTACAGCAGATGCTGGT
AATGATGCATTTGACCTAGAGGGACATTGCAAAGTATCATCCTCGGCGAC
AAATCGAAATGAGCAAACCATCGTGCGCGTACCAGGAGAAACTGGAAATC
GACTTACCGACAAATATAAGATTATTGGAGGGAAGCACATCACAGAGTCG
AGAGTAGAACAAAACAATTCAACGCTAGGCAGAACAAGCTCCATCCAAGT
TTCTTCTGGCTTGTGTTCAGCACCTAATGATTTAAACATATTCAATGGAA
ACCTCCTGCGAGACGCATCCAGCTCTTCTCGGCCAAACTCAGACGTTACG
AAAGCAAGCGGTGTGGTAATGAGCGAAGAAGTACTTTCTAGACATCATGC
AACAAGAAAACTAACACCTGAAAGTGGAAGTATTAGTCATAATTCGGCTC
ACGAAGTCAAAACTTATGGTGAGTCTCGAGCTCCTGACAGTTTTCTGAAA
GAGAAGGAGATCGACGACAAAAGCGGTCAAAGCTTTACGGCAGAACCACA
ACGAGTATCTGATGACGAAGGCATCAAAGCAGGGACGGTGACACATGAGA
TCCCGAGTTCGTCAAGACCGTCTCCAAAAATTGACTGTTTGAATCGTAAC
ACGGACTTTGATCAATTTGAAGAGCCGGGACCGGTGAACGTTGTAGAACA
ATGCATCGACGATAAAGTTTACGACAGCTCAAGCGTGCAAACTTCAAAAG
GCTGTTCCAACTGTCGTTTGCAGGTATGTACCTGTCAGCGAAGGCTCTAT
CATCAACACGAGGGAACAGTAGCAGCACCATCTGTAGTAAGCTTTAAAGT
TCGGCGTGGATCTAAGATACATTACATGACCGAGAATGTCTCGGGCGAGA
TTAAGTTCGGAATCAGGACTTGTAGCGATGGAATTTTGGTCGGAGAGCTT
ACTTTGTATCCTCAATCAGCAACAGGCCCCCGACGGACAGGTGGGCGGAG
AGAGTGGTATATACTATTACGAGGATTCCTTATCCTCGAAGTGGAAGAAT
CCACAATCCATTTGCGACAGGGCGACGAAGTCGAATTCGAAGAAGACACT
GTATTTCAGATGCGCAACCCATGCCTTCAGTCCACGGACCTGCTCTGTTT
TCTGTTTTCCCCAGAGTAA
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Coding sequence (CDS) from alignment at tig00000007_pilon:1877938..1879506+

>Gchil7555.t1 ID=Gchil7555.t1|Name=Gchil7555.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=1569bp|location=Sequence derived from alignment at tig00000007_pilon:1877938..1879506+ (Gracilaria chilensis NLEC103_M9 male)
ATGAGCGTAATTCGGGGGCACACAGCCACACATCGCCTCAGCTCTACAGA
AGCCGTGTCCAGACGGAAGTCGACTAGAACTAGAAGGATTCCAGGTCAGT
GGTGGAAAGGAGGTGCTGATCTCCCCGTATCCAAGCCCCAAAACGCCATC
AAGATTAGGTCATCCACGCTCCCAAATAATATTCAAAGATGTGCAAAGCG
GGGTGTGTCAAATACCTCTATATTCAAGGGCCTTGAGCTGCTCAAGAAAG
ATATTCCAAGACCGTCCTTGTCGGGAAACAAAAGCATCGTGGATGACGAA
GACAGGCACGGAACAATCAATTCCAGAAAGACACAGAAATGCCAGGGAAC
ATCACAACGCCGTTTTTTAAATGCCAAAGAGCAACTGCTGTCGAACAAAA
TGGCTATTTCTAGTGGTGAAACTTCCCTATCCCGTACAGCAGATGCTGGT
AATGATGCATTTGACCTAGAGGGACATTGCAAAGTATCATCCTCGGCGAC
AAATCGAAATGAGCAAACCATCGTGCGCGTACCAGGAGAAACTGGAAATC
GACTTACCGACAAATATAAGATTATTGGAGGGAAGCACATCACAGAGTCG
AGAGTAGAACAAAACAATTCAACGCTAGGCAGAACAAGCTCCATCCAAGT
TTCTTCTGGCTTGTGTTCAGCACCTAATGATTTAAACATATTCAATGGAA
ACCTCCTGCGAGACGCATCCAGCTCTTCTCGGCCAAACTCAGACGTTACG
AAAGCAAGCGGTGTGGTAATGAGCGAAGAAGTACTTTCTAGACATCATGC
AACAAGAAAACTAACACCTGAAAGTGGAAGTATTAGTCATAATTCGGCTC
ACGAAGTCAAAACTTATGGTGAGTCTCGAGCTCCTGACAGTTTTCTGAAA
GAGAAGGAGATCGACGACAAAAGCGGTCAAAGCTTTACGGCAGAACCACA
ACGAGTATCTGATGACGAAGGCATCAAAGCAGGGACGGTGACACATGAGA
TCCCGAGTTCGTCAAGACCGTCTCCAAAAATTGACTGTTTGAATCGTAAC
ACGGACTTTGATCAATTTGAAGAGCCGGGACCGGTGAACGTTGTAGAACA
ATGCATCGACGATAAAGTTTACGACAGCTCAAGCGTGCAAACTTCAAAAG
GCTGTTCCAACTGTCGTTTGCAGGTATGTACCTGTCAGCGAAGGCTCTAT
CATCAACACGAGGGAACAGTAGCAGCACCATCTGTAGTAAGCTTTAAAGT
TCGGCGTGGATCTAAGATACATTACATGACCGAGAATGTCTCGGGCGAGA
TTAAGTTCGGAATCAGGACTTGTAGCGATGGAATTTTGGTCGGAGAGCTT
ACTTTGTATCCTCAATCAGCAACAGGCCCCCGACGGACAGGTGGGCGGAG
AGAGTGGTATATACTATTACGAGGATTCCTTATCCTCGAAGTGGAAGAAT
CCACAATCCATTTGCGACAGGGCGACGAAGTCGAATTCGAAGAAGACACT
GTATTTCAGATGCGCAACCCATGCCTTCAGTCCACGGACCTGCTCTGTTT
TCTGTTTTCCCCAGAGTAA
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