Gchil7378.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGchil7378.t1
Unique NameGchil7378.t1
TypemRNA
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length105
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000007_piloncontigtig00000007_pilon:784392..784706 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog546264.NEIFLAOT_00970
PFAMsABM
Max annot lvl206351|Neisseriales
Evalue1.73e-14
EggNOG OGsCOG1359@1|root,COG1359@2|Bacteria,1NGPW@1224|Proteobacteria,2VXX3@28216|Betaproteobacteria,2KS5G@206351|Neisseriales
DescriptionPsort location Cytoplasmic, score 8.96
COG categoryC
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil7378Gchil7378Gracilaria chilensis NLEC103_M9 malegenetig00000007_pilon 784392..784706 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil7378.t1.start1Gchil7378.t1.start1Gracilaria chilensis NLEC103_M9 malestart_codontig00000007_pilon 784392..784394 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil7378.t1.CDS1Gchil7378.t1.CDS1Gracilaria chilensis NLEC103_M9 maleCDStig00000007_pilon 784392..784706 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil7378.t1.exon1Gchil7378.t1.exon1Gracilaria chilensis NLEC103_M9 maleexontig00000007_pilon 784392..784706 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil7378.t1.stop1Gchil7378.t1.stop1Gracilaria chilensis NLEC103_M9 malestop_codontig00000007_pilon 784704..784706 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil7378.t1Gchil7378.t1Gracilaria chilensis NLEC103_M9 malepolypeptidetig00000007_pilon 784392..784706 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gchil7378.t1 ID=Gchil7378.t1|Name=Gchil7378.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=105bp
MVVIPETEGVTEINLIATLTIKPEFVKDVKKTFFKLVTESRKEDGNISYE
PMQGVEKTNIIVVVETWKSKEDLQLHFDSKHHEDAMKEMDGKMESVELTF
FNKL*
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spliced messenger RNA

>Gchil7378.t1 ID=Gchil7378.t1|Name=Gchil7378.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=315bp|location=Sequence derived from alignment at tig00000007_pilon:784392..784706+ (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGTGGTAATCCCAGAGACTGAAGGAGTCACGGAAATCAACTTGATTGC
AACTTTGACGATCAAACCCGAATTTGTGAAGGACGTAAAAAAGACCTTTT
TCAAACTTGTGACTGAATCTCGTAAAGAAGATGGAAACATCAGCTATGAG
CCGATGCAGGGAGTTGAGAAAACAAACATCATCGTTGTCGTCGAGACGTG
GAAATCGAAGGAAGACTTGCAACTTCACTTCGATTCGAAACACCATGAGG
ACGCTATGAAGGAGATGGACGGAAAGATGGAGTCAGTTGAGCTAACATTT
TTCAATAAGTTGTAG
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protein sequence of Gchil7378.t1

>Gchil7378.t1 ID=Gchil7378.t1|Name=Gchil7378.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=105bp
MVVIPETEGVTEINLIATLTIKPEFVKDVKKTFFKLVTESRKEDGNISYE
PMQGVEKTNIIVVVETWKSKEDLQLHFDSKHHEDAMKEMDGKMESVELTF
FNKL*
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mRNA from alignment at tig00000007_pilon:784392..784706+

Legend: start_codonpolypeptideCDSexonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gchil7378.t1 ID=Gchil7378.t1|Name=Gchil7378.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=315bp|location=Sequence derived from alignment at tig00000007_pilon:784392..784706+ (Gracilaria chilensis NLEC103_M9 male)
ATGGTGGTAATCCCAGAGACTGAAGGAGTCACGGAAATCAACTTGATTGC
AACTTTGACGATCAAACCCGAATTTGTGAAGGACGTAAAAAAGACCTTTT
TCAAACTTGTGACTGAATCTCGTAAAGAAGATGGAAACATCAGCTATGAG
CCGATGCAGGGAGTTGAGAAAACAAACATCATCGTTGTCGTCGAGACGTG
GAAATCGAAGGAAGACTTGCAACTTCACTTCGATTCGAAACACCATGAGG
ACGCTATGAAGGAGATGGACGGAAAGATGGAGTCAGTTGAGCTAACATTT
TTCAATAAGTTGTAG
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Coding sequence (CDS) from alignment at tig00000007_pilon:784392..784706+

>Gchil7378.t1 ID=Gchil7378.t1|Name=Gchil7378.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=315bp|location=Sequence derived from alignment at tig00000007_pilon:784392..784706+ (Gracilaria chilensis NLEC103_M9 male)
ATGGTGGTAATCCCAGAGACTGAAGGAGTCACGGAAATCAACTTGATTGC
AACTTTGACGATCAAACCCGAATTTGTGAAGGACGTAAAAAAGACCTTTT
TCAAACTTGTGACTGAATCTCGTAAAGAAGATGGAAACATCAGCTATGAG
CCGATGCAGGGAGTTGAGAAAACAAACATCATCGTTGTCGTCGAGACGTG
GAAATCGAAGGAAGACTTGCAACTTCACTTCGATTCGAAACACCATGAGG
ACGCTATGAAGGAGATGGACGGAAAGATGGAGTCAGTTGAGCTAACATTT
TTCAATAAGTTGTAG
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