Gchil1031.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGchil1031.t1
Unique NameGchil1031.t1
TypemRNA
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length181
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000144_piloncontigtig00000144_pilon:86336..87962 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil1031Gchil1031Gracilaria chilensis NLEC103_M9 malegenetig00000144_pilon 86336..87962 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil1031.t1Gchil1031.t1Gracilaria chilensis NLEC103_M9 malepolypeptidetig00000144_pilon 86336..87962 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil1031.t1.CDS1Gchil1031.t1.CDS1Gracilaria chilensis NLEC103_M9 maleCDStig00000144_pilon 86336..86338 -
Gchil1031.t1.CDS2Gchil1031.t1.CDS2Gracilaria chilensis NLEC103_M9 maleCDStig00000144_pilon 87091..87151 -
Gchil1031.t1.CDS3Gchil1031.t1.CDS3Gracilaria chilensis NLEC103_M9 maleCDStig00000144_pilon 87226..87366 -
Gchil1031.t1.CDS4Gchil1031.t1.CDS4Gracilaria chilensis NLEC103_M9 maleCDStig00000144_pilon 87462..87591 -
Gchil1031.t1.CDS5Gchil1031.t1.CDS5Gracilaria chilensis NLEC103_M9 maleCDStig00000144_pilon 87668..87741 -
Gchil1031.t1.CDS6Gchil1031.t1.CDS6Gracilaria chilensis NLEC103_M9 maleCDStig00000144_pilon 87829..87962 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil1031.t1.exon1Gchil1031.t1.exon1Gracilaria chilensis NLEC103_M9 maleexontig00000144_pilon 86336..86338 -
Gchil1031.t1.exon2Gchil1031.t1.exon2Gracilaria chilensis NLEC103_M9 maleexontig00000144_pilon 87091..87151 -
Gchil1031.t1.exon3Gchil1031.t1.exon3Gracilaria chilensis NLEC103_M9 maleexontig00000144_pilon 87226..87366 -
Gchil1031.t1.exon4Gchil1031.t1.exon4Gracilaria chilensis NLEC103_M9 maleexontig00000144_pilon 87462..87591 -
Gchil1031.t1.exon5Gchil1031.t1.exon5Gracilaria chilensis NLEC103_M9 maleexontig00000144_pilon 87668..87741 -
Gchil1031.t1.exon6Gchil1031.t1.exon6Gracilaria chilensis NLEC103_M9 maleexontig00000144_pilon 87829..87962 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil1031.t1.stop1Gchil1031.t1.stop1Gracilaria chilensis NLEC103_M9 malestop_codontig00000144_pilon 86336..86338 -


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil1031.t1.intron1Gchil1031.t1.intron1Gracilaria chilensis NLEC103_M9 maleintrontig00000144_pilon 86339..87090 -
Gchil1031.t1.intron2Gchil1031.t1.intron2Gracilaria chilensis NLEC103_M9 maleintrontig00000144_pilon 87152..87225 -
Gchil1031.t1.intron3Gchil1031.t1.intron3Gracilaria chilensis NLEC103_M9 maleintrontig00000144_pilon 87367..87461 -
Gchil1031.t1.intron4Gchil1031.t1.intron4Gracilaria chilensis NLEC103_M9 maleintrontig00000144_pilon 87592..87667 -
Gchil1031.t1.intron5Gchil1031.t1.intron5Gracilaria chilensis NLEC103_M9 maleintrontig00000144_pilon 87742..87828 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil1031.t1.start1Gchil1031.t1.start1Gracilaria chilensis NLEC103_M9 malestart_codontig00000144_pilon 87960..87962 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gchil1031.t1 ID=Gchil1031.t1|Name=Gchil1031.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=181bp
MTPRSPKNAEDFLFVPSGGSNAACVGCSIRVFGTDGKSWLSIFALLLRYR
HYLLKNPTLYRLRKALQSTMMKMLMLSDENIVNDGNTTRQWIVNLILTTT
ALFLVLSYEASMTASLVQESIEAQFESTADLLYCRMDPSDICLLKGGALE
KYWEKSIAIDKCHFENPPKYFFSYQSLFEA*
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spliced messenger RNA

>Gchil1031.t1 ID=Gchil1031.t1|Name=Gchil1031.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=543bp|location=Sequence derived from alignment at tig00000144_pilon:86336..87962- (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGACCCCCAGATCCCCGAAGAATGCAGAAGATTTTCTTTTCGTTCCTTC
TGGCGGCTCTAATGCTGCCTGCGTTGGCTGTTCAATACGGGTTTTCGGCA
CAGACGGTAAATCTTGGTTGTCTATTTTTGCCTTACTTCTGCGGTACCGA
CACTACCTCTTGAAGAACCCCACACTTTATCGGCTGAGAAAGGCGTTACA
GAGCACGATGATGAAAATGCTGATGCTTTCTGACGAGAATATTGTTAACG
ATGGTAACACCACTCGCCAGTGGATTGTTAACCTTATACTCACCACTACT
GCTCTGTTTCTCGTGTTGTCGTATGAAGCGAGCATGACGGCATCACTGGT
GCAGGAGTCCATCGAAGCCCAATTTGAATCAACTGCAGATCTCTTGTACT
GCCGTATGGATCCGTCGGATATATGTTTACTAAAAGGCGGAGCTCTCGAA
AAATATTGGGAGAAATCGATTGCTATAGACAAATGCCACTTTGAGAACCC
TCCGAAATACTTCTTTTCTTACCAGTCATTATTTGAAGCTTAA
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protein sequence of Gchil1031.t1

>Gchil1031.t1 ID=Gchil1031.t1|Name=Gchil1031.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=181bp
MTPRSPKNAEDFLFVPSGGSNAACVGCSIRVFGTDGKSWLSIFALLLRYR
HYLLKNPTLYRLRKALQSTMMKMLMLSDENIVNDGNTTRQWIVNLILTTT
ALFLVLSYEASMTASLVQESIEAQFESTADLLYCRMDPSDICLLKGGALE
KYWEKSIAIDKCHFENPPKYFFSYQSLFEA*
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mRNA from alignment at tig00000144_pilon:86336..87962-

Legend: polypeptideCDSexonstart_codonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gchil1031.t1 ID=Gchil1031.t1|Name=Gchil1031.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1627bp|location=Sequence derived from alignment at tig00000144_pilon:86336..87962- (Gracilaria chilensis NLEC103_M9 male)
ATGACCCCCAGATCCCCGAAGAATGCAGAAGATTTTCTTTTCGTTCCTTC
TGGCGGCTCTAATGCTGCCTGCGTTGGCTGTTCAATACGGGTTTTCGGCA
CAGACGGTAAATCTTGGTTGTCTATTTTTGCCTTGTTCGTTATGTTTTCG
TCATTGAAGATTGTTGACCGTCGCTTTGCTGTACCTCATCCATTTCACCC
TCTTCCGAACATAACCTCCAGACTTCTGCGGTACCGACACTACCTCTTGA
AGAACCCCACACTTTATCGGCTGAGAAAGGCGTTACAGAGCACGAGTACG
TCCAGGTTCATTCGATGGCATCGTTGTATTCGCACTCTAACCTCCTATTG
AAAATTACATCTTTCTTATAGTGATGAAAATGCTGATGCTTTCTGACGAG
AATATTGTTAACGATGGTAACACCACTCGCCAGTGGATTGTTAACCTTAT
ACTCACCACTACTGCTCTGTTTCTCGTGTTGTCGTATGAAGCGAGCATGA
CGTAAGTATATCACTTGTTTGCGACTTTCTAAATCCAAAAAATAATACAT
GCTTACCACACCCGTTCTGTTTCGTGTCCGTCCACAATTACATCAGGGCA
TCACTGGTGCAGGAGTCCATCGAAGCCCAATTTGAATCAACTGCAGATCT
CTTGTACTGCCGTATGGATCCGTCGGATATATGTTTACTAAAAGGCGGAG
CTCTCGAAAAATATTGGGAGAAATCGATTGCTATAGAGTATGTGTTTTAC
TTTCTTTGCCTGACACTTACAGAAGAAGAATCTGACCGATGCCCTTGTTA
CTATCCGGTAGCAAATGCCACTTTGAGAACCCTCCGAAATACTTCTTTTC
TTACCAGTCATTATTTGAAGCTGTTGACAACCATCAGTGCAAATATGCTG
TCATTATTGAATCTGCCGTCACATCCATGATTCGAAATAGGTATTGCGGA
AAGTTTGTAATTGTTGGGAAGCCCATCTTCACCGGCGGGTTGTCCATGCT
GCTCCCAAAGGGAAGTAATCTGACAGAAGGAATGAGTCGAGTCACACTTG
ATCTGGTAGGGAATCGTACAACGTCTTACATTTCCGCTTTCTTTGACCAT
CTACCGCTCTGCAGAACGGAAGTGGCAACCTTGCTCAGCTTCATGAAGCT
TCGCTGGTTCTTCTTCACAGCATTTTCAGTCGGAGGGGCTTTGCTTCTTG
CGCTTGTGATCATTCCCCAGAAAGCAGACGAGGAAGTTTAAATCCTGATC
TTTTTAAACTATTTCTGCTTGCAGTATTCTTTTTTGCTGAAAATGTATAT
ATGAGCGAAGTTCCACACCACATATTTATTTAGTATTCTTTACGTGGAAA
AATTTTGAAATAGCTGTGATACGATCGTTCTTAAACTGATTGTATTTTAT
TCTCATGAAAAACTCTTTAAAACCCAAGAATTAAAGCGGACTTCACATTT
CGCAGTACTTACTTTTTGTACGAGGCATCAGACCCAAATGTATTGTTGGT
AATCATCAAAAGTATTCGATAAAAAGCAGATACATTCCCAGCATAAGTAT
CATAGAATGTGTTTTTGACTCCAGCGACTGACTCATGATTTGTTTTTCAT
ATTCATTACATGCTTTTGTTTTAGTAA
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Coding sequence (CDS) from alignment at tig00000144_pilon:86336..87962-

>Gchil1031.t1 ID=Gchil1031.t1|Name=Gchil1031.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=543bp|location=Sequence derived from alignment at tig00000144_pilon:86336..87962- (Gracilaria chilensis NLEC103_M9 male)
ATGACCCCCAGATCCCCGAAGAATGCAGAAGATTTTCTTTTCGTTCCTTC
TGGCGGCTCTAATGCTGCCTGCGTTGGCTGTTCAATACGGGTTTTCGGCA
CAGACGGTAAATCTTGGTTGTCTATTTTTGCCTTACTTCTGCGGTACCGA
CACTACCTCTTGAAGAACCCCACACTTTATCGGCTGAGAAAGGCGTTACA
GAGCACGATGATGAAAATGCTGATGCTTTCTGACGAGAATATTGTTAACG
ATGGTAACACCACTCGCCAGTGGATTGTTAACCTTATACTCACCACTACT
GCTCTGTTTCTCGTGTTGTCGTATGAAGCGAGCATGACGGCATCACTGGT
GCAGGAGTCCATCGAAGCCCAATTTGAATCAACTGCAGATCTCTTGTACT
GCCGTATGGATCCGTCGGATATATGTTTACTAAAAGGCGGAGCTCTCGAA
AAATATTGGGAGAAATCGATTGCTATAGACAAATGCCACTTTGAGAACCC
TCCGAAATACTTCTTTTCTTACCAGTCATTATTTGAAGCTTAA
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