Gchil7403.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGchil7403.t1
Unique NameGchil7403.t1
TypemRNA
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length94
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000007_piloncontigtig00000007_pilon:946950..947422 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog4792.ETI33985
PFAMsGlutaredoxin
Max annot lvl4776|Peronosporales
KEGG koko:K03676
Evalue9.88e-19
EggNOG OGsCOG0695@1|root,KOG1752@2759|Eukaryota,3QG0I@4776|Peronosporales
DescriptionGlutaredoxin
COG categoryO
BRITEko00000,ko03110
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil7403Gchil7403Gracilaria chilensis NLEC103_M9 malegenetig00000007_pilon 946950..947422 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil7403.t1Gchil7403.t1Gracilaria chilensis NLEC103_M9 malepolypeptidetig00000007_pilon 946950..947422 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil7403.t1.start1Gchil7403.t1.start1Gracilaria chilensis NLEC103_M9 malestart_codontig00000007_pilon 946950..946952 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil7403.t1.CDS1Gchil7403.t1.CDS1Gracilaria chilensis NLEC103_M9 maleCDStig00000007_pilon 946950..947044 +
Gchil7403.t1.CDS2Gchil7403.t1.CDS2Gracilaria chilensis NLEC103_M9 maleCDStig00000007_pilon 947162..947295 +
Gchil7403.t1.CDS3Gchil7403.t1.CDS3Gracilaria chilensis NLEC103_M9 maleCDStig00000007_pilon 947370..947422 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil7403.t1.exon1Gchil7403.t1.exon1Gracilaria chilensis NLEC103_M9 maleexontig00000007_pilon 946950..947044 +
Gchil7403.t1.exon2Gchil7403.t1.exon2Gracilaria chilensis NLEC103_M9 maleexontig00000007_pilon 947162..947295 +
Gchil7403.t1.exon3Gchil7403.t1.exon3Gracilaria chilensis NLEC103_M9 maleexontig00000007_pilon 947370..947422 +


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil7403.t1.intron1Gchil7403.t1.intron1Gracilaria chilensis NLEC103_M9 maleintrontig00000007_pilon 947045..947161 +
Gchil7403.t1.intron2Gchil7403.t1.intron2Gracilaria chilensis NLEC103_M9 maleintrontig00000007_pilon 947296..947369 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil7403.t1.stop1Gchil7403.t1.stop1Gracilaria chilensis NLEC103_M9 malestop_codontig00000007_pilon 947420..947422 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gchil7403.t1 ID=Gchil7403.t1|Name=Gchil7403.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=94bp
MALSFISPVGRLPFNALRSVRQNSRCPARPRCVDHTVWELNEREDGDEIK
TILLEKTGQRTVPNVFVNGQHVGGCDDTMVLHEQGQLLKMIKA*
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spliced messenger RNA

>Gchil7403.t1 ID=Gchil7403.t1|Name=Gchil7403.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=282bp|location=Sequence derived from alignment at tig00000007_pilon:946950..947422+ (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGCCCTCTCATTCATTTCTCCTGTTGGTCGTTTGCCGTTCAATGCTCT
TCGATCGGTTCGGCAGAACTCGCGCTGCCCGGCCAGACCCCGTTGCGTCG
ATCATACTGTTTGGGAGCTCAATGAGCGAGAGGACGGTGATGAGATCAAA
ACTATTCTGCTCGAAAAAACCGGTCAGCGAACAGTCCCAAACGTTTTTGT
GAACGGACAACATGTAGGTGGCTGTGATGACACAATGGTCCTTCACGAAC
AGGGACAGTTGCTCAAAATGATTAAAGCTTGA
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protein sequence of Gchil7403.t1

>Gchil7403.t1 ID=Gchil7403.t1|Name=Gchil7403.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=94bp
MALSFISPVGRLPFNALRSVRQNSRCPARPRCVDHTVWELNEREDGDEIK
TILLEKTGQRTVPNVFVNGQHVGGCDDTMVLHEQGQLLKMIKA*
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mRNA from alignment at tig00000007_pilon:946950..947422+

Legend: polypeptidestart_codonCDSexonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gchil7403.t1 ID=Gchil7403.t1|Name=Gchil7403.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=473bp|location=Sequence derived from alignment at tig00000007_pilon:946950..947422+ (Gracilaria chilensis NLEC103_M9 male)
ATGGCCCTCTCATTCATTTCTCCTGTTGGTCGTTTGCCGTTCAATGCTCT
TCGATCGGTTCGGCAGAACTCGCGCTGCCCGGCCAGACCCCGTTGGTACG
CATCTTCAACTTCGATAGTCGACAACGCTATATCAGAGAATAATGTAATG
GTTTTTTCTGCCACGTACTGCCCCTACTGCATGCGTGTCAAGTCTCTTTT
CAACGATCTCAGCGTCGATCATACTGTTTGGGAGCTCAATGAGCGAGAGG
ACGGTGATGAGATCAAAACTATTCTGCTCGAAAAAACCGGTCAGCGAACA
GTCCCAAACGTTTTTGTGAACGGACAACATGTAGGTGGCTGTGATGGTAA
GTTACGTTCACCTTCTCTTGAGAAGCCCAATATAAGTATCTAACAAAATC
GCATCTTTTGTACGATGAAGACACAATGGTCCTTCACGAACAGGGACAGT
TGCTCAAAATGATTAAAGCTTGA
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Coding sequence (CDS) from alignment at tig00000007_pilon:946950..947422+

>Gchil7403.t1 ID=Gchil7403.t1|Name=Gchil7403.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=282bp|location=Sequence derived from alignment at tig00000007_pilon:946950..947422+ (Gracilaria chilensis NLEC103_M9 male)
ATGGCCCTCTCATTCATTTCTCCTGTTGGTCGTTTGCCGTTCAATGCTCT
TCGATCGGTTCGGCAGAACTCGCGCTGCCCGGCCAGACCCCGTTGCGTCG
ATCATACTGTTTGGGAGCTCAATGAGCGAGAGGACGGTGATGAGATCAAA
ACTATTCTGCTCGAAAAAACCGGTCAGCGAACAGTCCCAAACGTTTTTGT
GAACGGACAACATGTAGGTGGCTGTGATGACACAATGGTCCTTCACGAAC
AGGGACAGTTGCTCAAAATGATTAAAGCTTGA
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