Gchil7080.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGchil7080.t1
Unique NameGchil7080.t1
TypemRNA
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length339
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000131_piloncontigtig00000131_pilon:498173..499314 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil7080Gchil7080Gracilaria chilensis NLEC103_M9 malegenetig00000131_pilon 498173..499314 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil7080.t1Gchil7080.t1Gracilaria chilensis NLEC103_M9 malepolypeptidetig00000131_pilon 498173..499314 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil7080.t1.start1Gchil7080.t1.start1Gracilaria chilensis NLEC103_M9 malestart_codontig00000131_pilon 498173..498175 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil7080.t1.CDS1Gchil7080.t1.CDS1Gracilaria chilensis NLEC103_M9 maleCDStig00000131_pilon 498173..498683 +
Gchil7080.t1.CDS2Gchil7080.t1.CDS2Gracilaria chilensis NLEC103_M9 maleCDStig00000131_pilon 498809..499314 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil7080.t1.exon1Gchil7080.t1.exon1Gracilaria chilensis NLEC103_M9 maleexontig00000131_pilon 498173..498683 +
Gchil7080.t1.exon2Gchil7080.t1.exon2Gracilaria chilensis NLEC103_M9 maleexontig00000131_pilon 498809..499314 +


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil7080.t1.intron1Gchil7080.t1.intron1Gracilaria chilensis NLEC103_M9 maleintrontig00000131_pilon 498684..498808 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil7080.t1.stop1Gchil7080.t1.stop1Gracilaria chilensis NLEC103_M9 malestop_codontig00000131_pilon 499312..499314 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gchil7080.t1 ID=Gchil7080.t1|Name=Gchil7080.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=339bp
MRNSSILLECCPEEEGLLEKLKQRERDLWTRDMDRVRSCVRIAQGESNSN
AITTQAPPALDKEKSQNFSLDEFVRLVIFIHEEDIARKAMKRAVGSPLER
RELDDRASRDDILVMVENRFNDTTLLNRADFSTVIENIESSRASPAHKSS
ALLKGHYQEARNDFTFFYEKYNDDTELVHLSSKVIGDDVGYDTGVNGEEG
DEISRGAPFRKKRCRSNDSILLEDKIEKLVNITTSLVMVSQRQKTGFDGS
NTQNRLEIVRAEIKCHSLQSEADNAEVTDMKDFVEKTSSKLFRKMKDNIN
KMLDEEVYQSFINDKLLIYVLLGCGQLAYMLVRMRRHL*
back to top

spliced messenger RNA

>Gchil7080.t1 ID=Gchil7080.t1|Name=Gchil7080.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1017bp|location=Sequence derived from alignment at tig00000131_pilon:498173..499314+ (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCGTAACAGTTCAATTCTTCTAGAATGCTGTCCGGAAGAAGAAGGTCT
TCTGGAGAAGTTAAAACAACGAGAACGCGACTTATGGACAAGAGACATGG
ATCGCGTTCGCTCTTGCGTTCGCATAGCTCAAGGTGAGTCCAATTCCAAT
GCCATAACTACTCAAGCTCCGCCAGCACTAGACAAGGAAAAAAGTCAGAA
CTTCTCATTGGATGAGTTTGTGCGTCTTGTTATCTTTATTCATGAAGAAG
ATATCGCTCGAAAGGCAATGAAACGCGCTGTCGGTTCTCCTCTGGAGCGT
CGCGAGCTCGACGATAGGGCCTCTCGAGATGACATCTTAGTCATGGTCGA
AAATCGTTTTAATGACACTACGCTACTGAACAGAGCAGATTTTTCAACCG
TTATAGAAAATATTGAATCGTCCCGAGCCTCCCCTGCCCACAAATCTTCG
GCTTTACTGAAGGGGCATTACCAAGAGGCAAGGAATGATTTTACTTTCTT
CTACGAAAAATACAATGATGACACTGAGCTGGTACACCTGTCTTCTAAGG
TAATTGGGGATGACGTTGGCTACGATACAGGAGTGAATGGTGAAGAAGGC
GATGAAATTTCTCGTGGTGCTCCGTTTAGAAAGAAAAGATGCCGTTCAAA
TGACTCCATTCTGCTAGAGGATAAGATAGAAAAGCTTGTGAACATCACGA
CGTCGTTGGTAATGGTTTCACAGAGGCAGAAGACGGGGTTTGATGGATCA
AACACACAGAACAGGTTGGAAATAGTGAGAGCAGAGATAAAATGTCATTC
TCTGCAGAGCGAGGCAGATAATGCGGAGGTAACAGATATGAAGGATTTCG
TGGAAAAGACTTCATCGAAGCTTTTCCGCAAAATGAAGGACAACATTAAC
AAAATGTTGGATGAAGAAGTTTACCAGAGCTTTATAAATGACAAATTGTT
GATATATGTGCTGTTGGGGTGTGGTCAGCTCGCTTATATGCTTGTGAGAA
TGAGACGTCATCTATGA
back to top

protein sequence of Gchil7080.t1

>Gchil7080.t1 ID=Gchil7080.t1|Name=Gchil7080.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=339bp
MRNSSILLECCPEEEGLLEKLKQRERDLWTRDMDRVRSCVRIAQGESNSN
AITTQAPPALDKEKSQNFSLDEFVRLVIFIHEEDIARKAMKRAVGSPLER
RELDDRASRDDILVMVENRFNDTTLLNRADFSTVIENIESSRASPAHKSS
ALLKGHYQEARNDFTFFYEKYNDDTELVHLSSKVIGDDVGYDTGVNGEEG
DEISRGAPFRKKRCRSNDSILLEDKIEKLVNITTSLVMVSQRQKTGFDGS
NTQNRLEIVRAEIKCHSLQSEADNAEVTDMKDFVEKTSSKLFRKMKDNIN
KMLDEEVYQSFINDKLLIYVLLGCGQLAYMLVRMRRHL*
back to top

mRNA from alignment at tig00000131_pilon:498173..499314+

Legend: polypeptidestart_codonCDSexonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gchil7080.t1 ID=Gchil7080.t1|Name=Gchil7080.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1142bp|location=Sequence derived from alignment at tig00000131_pilon:498173..499314+ (Gracilaria chilensis NLEC103_M9 male)
ATGCGTAACAGTTCAATTCTTCTAGAATGCTGTCCGGAAGAAGAAGGTCT
TCTGGAGAAGTTAAAACAACGAGAACGCGACTTATGGACAAGAGACATGG
ATCGCGTTCGCTCTTGCGTTCGCATAGCTCAAGGTGAGTCCAATTCCAAT
GCCATAACTACTCAAGCTCCGCCAGCACTAGACAAGGAAAAAAGTCAGAA
CTTCTCATTGGATGAGTTTGTGCGTCTTGTTATCTTTATTCATGAAGAAG
ATATCGCTCGAAAGGCAATGAAACGCGCTGTCGGTTCTCCTCTGGAGCGT
CGCGAGCTCGACGATAGGGCCTCTCGAGATGACATCTTAGTCATGGTCGA
AAATCGTTTTAATGACACTACGCTACTGAACAGAGCAGATTTTTCAACCG
TTATAGAAAATATTGAATCGTCCCGAGCCTCCCCTGCCCACAAATCTTCG
GCTTTACTGAAGGGGCATTACCAAGAGGCAAGGAATGATTTTACTTTCTT
CTACGAAAAATGTTCGGCATCGGGACAGAAAGACCCCGAACGCTTTCCGG
ATTTTCTTCTCAAGCATTCAAATGGGTCGTTCATGACTGCCTCAGCCCGT
TCATTTTTTTGTTTAAGCTGTTTCGCTGCGGAACAGACAATGATGACACT
GAGCTGGTACACCTGTCTTCTAAGGTAATTGGGGATGACGTTGGCTACGA
TACAGGAGTGAATGGTGAAGAAGGCGATGAAATTTCTCGTGGTGCTCCGT
TTAGAAAGAAAAGATGCCGTTCAAATGACTCCATTCTGCTAGAGGATAAG
ATAGAAAAGCTTGTGAACATCACGACGTCGTTGGTAATGGTTTCACAGAG
GCAGAAGACGGGGTTTGATGGATCAAACACACAGAACAGGTTGGAAATAG
TGAGAGCAGAGATAAAATGTCATTCTCTGCAGAGCGAGGCAGATAATGCG
GAGGTAACAGATATGAAGGATTTCGTGGAAAAGACTTCATCGAAGCTTTT
CCGCAAAATGAAGGACAACATTAACAAAATGTTGGATGAAGAAGTTTACC
AGAGCTTTATAAATGACAAATTGTTGATATATGTGCTGTTGGGGTGTGGT
CAGCTCGCTTATATGCTTGTGAGAATGAGACGTCATCTATGA
back to top

Coding sequence (CDS) from alignment at tig00000131_pilon:498173..499314+

>Gchil7080.t1 ID=Gchil7080.t1|Name=Gchil7080.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=1017bp|location=Sequence derived from alignment at tig00000131_pilon:498173..499314+ (Gracilaria chilensis NLEC103_M9 male)
ATGCGTAACAGTTCAATTCTTCTAGAATGCTGTCCGGAAGAAGAAGGTCT
TCTGGAGAAGTTAAAACAACGAGAACGCGACTTATGGACAAGAGACATGG
ATCGCGTTCGCTCTTGCGTTCGCATAGCTCAAGGTGAGTCCAATTCCAAT
GCCATAACTACTCAAGCTCCGCCAGCACTAGACAAGGAAAAAAGTCAGAA
CTTCTCATTGGATGAGTTTGTGCGTCTTGTTATCTTTATTCATGAAGAAG
ATATCGCTCGAAAGGCAATGAAACGCGCTGTCGGTTCTCCTCTGGAGCGT
CGCGAGCTCGACGATAGGGCCTCTCGAGATGACATCTTAGTCATGGTCGA
AAATCGTTTTAATGACACTACGCTACTGAACAGAGCAGATTTTTCAACCG
TTATAGAAAATATTGAATCGTCCCGAGCCTCCCCTGCCCACAAATCTTCG
GCTTTACTGAAGGGGCATTACCAAGAGGCAAGGAATGATTTTACTTTCTT
CTACGAAAAATACAATGATGACACTGAGCTGGTACACCTGTCTTCTAAGG
TAATTGGGGATGACGTTGGCTACGATACAGGAGTGAATGGTGAAGAAGGC
GATGAAATTTCTCGTGGTGCTCCGTTTAGAAAGAAAAGATGCCGTTCAAA
TGACTCCATTCTGCTAGAGGATAAGATAGAAAAGCTTGTGAACATCACGA
CGTCGTTGGTAATGGTTTCACAGAGGCAGAAGACGGGGTTTGATGGATCA
AACACACAGAACAGGTTGGAAATAGTGAGAGCAGAGATAAAATGTCATTC
TCTGCAGAGCGAGGCAGATAATGCGGAGGTAACAGATATGAAGGATTTCG
TGGAAAAGACTTCATCGAAGCTTTTCCGCAAAATGAAGGACAACATTAAC
AAAATGTTGGATGAAGAAGTTTACCAGAGCTTTATAAATGACAAATTGTT
GATATATGTGCTGTTGGGGTGTGGTCAGCTCGCTTATATGCTTGTGAGAA
TGAGACGTCATCTATGA
back to top