Gchil7065.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGchil7065.t1
Unique NameGchil7065.t1
TypemRNA
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length282
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000131_piloncontigtig00000131_pilon:362155..363000 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil7065Gchil7065Gracilaria chilensis NLEC103_M9 malegenetig00000131_pilon 362155..363000 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil7065.t1.start1Gchil7065.t1.start1Gracilaria chilensis NLEC103_M9 malestart_codontig00000131_pilon 362155..362157 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil7065.t1.CDS1Gchil7065.t1.CDS1Gracilaria chilensis NLEC103_M9 maleCDStig00000131_pilon 362155..363000 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil7065.t1.exon1Gchil7065.t1.exon1Gracilaria chilensis NLEC103_M9 maleexontig00000131_pilon 362155..363000 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil7065.t1.stop1Gchil7065.t1.stop1Gracilaria chilensis NLEC103_M9 malestop_codontig00000131_pilon 362998..363000 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil7065.t1Gchil7065.t1Gracilaria chilensis NLEC103_M9 malepolypeptidetig00000131_pilon 362155..363000 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gchil7065.t1 ID=Gchil7065.t1|Name=Gchil7065.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=282bp
MAALRKRLLARWRLENAGQSELDTASASRKRARPAFHDDRPPASQRAANA
ADDALRGKRRRNGAAAPRVGVQHEPTTEPTACAPGCHLRLRLPATTTARE
GRTDGCDDAFSSAACANTNGDTCGGVSKSHSPRNVQSRRAMVGGESGTRS
SSRRTEQLQRQIEALSRQRWSLEQSVFEEICSRASEMRSNCALGEQRLQL
KADIGKLSAEGVRDLLVHLARRCSGFEIEDHEEVLVRTDLLSPALVAEIG
LIVMMDKGLVHVGAHAELRKVRTSLGKCLEE*
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spliced messenger RNA

>Gchil7065.t1 ID=Gchil7065.t1|Name=Gchil7065.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=846bp|location=Sequence derived from alignment at tig00000131_pilon:362155..363000+ (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGCGGCGTTGCGCAAGCGGCTGCTGGCGCGTTGGCGCCTCGAGAACGC
CGGCCAATCTGAGTTGGACACCGCCTCAGCTTCGCGCAAGAGAGCACGGC
CCGCCTTTCACGACGATCGCCCACCAGCCTCCCAACGCGCAGCCAACGCG
GCGGACGATGCTCTGAGAGGCAAACGTCGGCGGAATGGCGCCGCCGCGCC
TCGAGTGGGTGTGCAGCACGAGCCCACAACGGAGCCCACTGCGTGCGCCC
CTGGCTGTCATCTGCGGCTTAGATTACCCGCAACGACCACAGCACGCGAA
GGGCGCACGGACGGTTGTGACGATGCGTTTTCGTCTGCGGCATGTGCAAA
CACAAACGGCGACACGTGCGGAGGCGTCTCGAAGAGTCATTCGCCGCGCA
ACGTGCAGTCCAGGCGGGCAATGGTGGGCGGCGAGTCTGGTACGCGCTCG
TCATCTCGTAGAACGGAGCAGCTGCAACGGCAGATCGAAGCATTGAGTCG
GCAGCGATGGAGCTTGGAGCAGAGCGTGTTTGAGGAGATTTGTAGCAGGG
CAAGCGAGATGAGGAGCAATTGCGCGTTGGGCGAACAGCGACTGCAGCTC
AAGGCGGACATTGGAAAGCTGTCTGCAGAGGGGGTGCGCGACTTGCTGGT
GCACTTGGCGAGGCGGTGCAGCGGGTTTGAAATTGAGGATCACGAGGAGG
TTTTAGTGCGCACTGACCTGCTGTCGCCGGCACTTGTGGCGGAGATTGGG
TTGATTGTGATGATGGACAAGGGGCTGGTGCATGTGGGCGCTCACGCAGA
GCTGCGGAAAGTGCGCACAAGTCTGGGCAAATGCCTAGAAGAGTAA
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protein sequence of Gchil7065.t1

>Gchil7065.t1 ID=Gchil7065.t1|Name=Gchil7065.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=282bp
MAALRKRLLARWRLENAGQSELDTASASRKRARPAFHDDRPPASQRAANA
ADDALRGKRRRNGAAAPRVGVQHEPTTEPTACAPGCHLRLRLPATTTARE
GRTDGCDDAFSSAACANTNGDTCGGVSKSHSPRNVQSRRAMVGGESGTRS
SSRRTEQLQRQIEALSRQRWSLEQSVFEEICSRASEMRSNCALGEQRLQL
KADIGKLSAEGVRDLLVHLARRCSGFEIEDHEEVLVRTDLLSPALVAEIG
LIVMMDKGLVHVGAHAELRKVRTSLGKCLEE*
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mRNA from alignment at tig00000131_pilon:362155..363000+

Legend: start_codonpolypeptideCDSexonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gchil7065.t1 ID=Gchil7065.t1|Name=Gchil7065.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=846bp|location=Sequence derived from alignment at tig00000131_pilon:362155..363000+ (Gracilaria chilensis NLEC103_M9 male)
ATGGCGGCGTTGCGCAAGCGGCTGCTGGCGCGTTGGCGCCTCGAGAACGC
CGGCCAATCTGAGTTGGACACCGCCTCAGCTTCGCGCAAGAGAGCACGGC
CCGCCTTTCACGACGATCGCCCACCAGCCTCCCAACGCGCAGCCAACGCG
GCGGACGATGCTCTGAGAGGCAAACGTCGGCGGAATGGCGCCGCCGCGCC
TCGAGTGGGTGTGCAGCACGAGCCCACAACGGAGCCCACTGCGTGCGCCC
CTGGCTGTCATCTGCGGCTTAGATTACCCGCAACGACCACAGCACGCGAA
GGGCGCACGGACGGTTGTGACGATGCGTTTTCGTCTGCGGCATGTGCAAA
CACAAACGGCGACACGTGCGGAGGCGTCTCGAAGAGTCATTCGCCGCGCA
ACGTGCAGTCCAGGCGGGCAATGGTGGGCGGCGAGTCTGGTACGCGCTCG
TCATCTCGTAGAACGGAGCAGCTGCAACGGCAGATCGAAGCATTGAGTCG
GCAGCGATGGAGCTTGGAGCAGAGCGTGTTTGAGGAGATTTGTAGCAGGG
CAAGCGAGATGAGGAGCAATTGCGCGTTGGGCGAACAGCGACTGCAGCTC
AAGGCGGACATTGGAAAGCTGTCTGCAGAGGGGGTGCGCGACTTGCTGGT
GCACTTGGCGAGGCGGTGCAGCGGGTTTGAAATTGAGGATCACGAGGAGG
TTTTAGTGCGCACTGACCTGCTGTCGCCGGCACTTGTGGCGGAGATTGGG
TTGATTGTGATGATGGACAAGGGGCTGGTGCATGTGGGCGCTCACGCAGA
GCTGCGGAAAGTGCGCACAAGTCTGGGCAAATGCCTAGAAGAGTAA
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Coding sequence (CDS) from alignment at tig00000131_pilon:362155..363000+

>Gchil7065.t1 ID=Gchil7065.t1|Name=Gchil7065.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=846bp|location=Sequence derived from alignment at tig00000131_pilon:362155..363000+ (Gracilaria chilensis NLEC103_M9 male)
ATGGCGGCGTTGCGCAAGCGGCTGCTGGCGCGTTGGCGCCTCGAGAACGC
CGGCCAATCTGAGTTGGACACCGCCTCAGCTTCGCGCAAGAGAGCACGGC
CCGCCTTTCACGACGATCGCCCACCAGCCTCCCAACGCGCAGCCAACGCG
GCGGACGATGCTCTGAGAGGCAAACGTCGGCGGAATGGCGCCGCCGCGCC
TCGAGTGGGTGTGCAGCACGAGCCCACAACGGAGCCCACTGCGTGCGCCC
CTGGCTGTCATCTGCGGCTTAGATTACCCGCAACGACCACAGCACGCGAA
GGGCGCACGGACGGTTGTGACGATGCGTTTTCGTCTGCGGCATGTGCAAA
CACAAACGGCGACACGTGCGGAGGCGTCTCGAAGAGTCATTCGCCGCGCA
ACGTGCAGTCCAGGCGGGCAATGGTGGGCGGCGAGTCTGGTACGCGCTCG
TCATCTCGTAGAACGGAGCAGCTGCAACGGCAGATCGAAGCATTGAGTCG
GCAGCGATGGAGCTTGGAGCAGAGCGTGTTTGAGGAGATTTGTAGCAGGG
CAAGCGAGATGAGGAGCAATTGCGCGTTGGGCGAACAGCGACTGCAGCTC
AAGGCGGACATTGGAAAGCTGTCTGCAGAGGGGGTGCGCGACTTGCTGGT
GCACTTGGCGAGGCGGTGCAGCGGGTTTGAAATTGAGGATCACGAGGAGG
TTTTAGTGCGCACTGACCTGCTGTCGCCGGCACTTGTGGCGGAGATTGGG
TTGATTGTGATGATGGACAAGGGGCTGGTGCATGTGGGCGCTCACGCAGA
GCTGCGGAAAGTGCGCACAAGTCTGGGCAAATGCCTAGAAGAGTAA
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