Gchil7029.t1 (polypeptide) Gracilaria chilensis NLEC103_M9 male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NameGchil7029.t1
Unique NameGchil7029.t1
Typepolypeptide
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length265
Homology
BLAST of Gchil7029.t1 vs. uniprot
Match: A0A2V3J822_9FLOR (Upstream activation factor subunit UAF30 n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3J822_9FLOR)

HSP 1 Score: 258 bits (660), Expect = 3.920e-83
Identity = 139/254 (54.72%), Postives = 171/254 (67.32%), Query Frame = 0
Query:   14 FASSFLPH---PIPHAASVPSRFVCAARDSPQHDMAVKRGKIPGYVRPIVPAKPLHHFVEDKAQSRADVSKAICAYAKEHNLQDPNDGRIIYCDDVLRSALGVDQCTVLEVLKYATPHFIKPEQLGGRYIQEAIAIERAFLDGQPSDGTQKKKTRTKSQARKQTAEEDRKAGRHLFRPMCLTPELAAVCRAPELTRHEVVKAVWEYIHMNNLQGQGPPERPIRCDFLLRKVFNADCINVRTVMSGISPHMRKKE 264
            F S+F+P     +P    +P+   C AR S    +     KIP Y RPIVPAK L  FVEDKAQ+R+++ + I AY K+HNLQDP D R   CDD L++  GV+    L+VLK   PH I P+QLGGRY+ EA  I R           +KKK + KS+ARK+ AEED KAG  LF P+ L+ +LAAVCR  E+ R EVVKAVWEYI MNNLQ QGPP+ P++CDFLLRKV+N D INVRTVMSGISPH++KKE
Sbjct:   11 FTSTFIPARVLSVPVLVPLPNHR-CVARPSA---VVASAPKIPAYRRPIVPAKILLPFVEDKAQTRSEIVRGITAYIKKHNLQDPKDRRTFTCDDRLKTIFGVESSNFLQVLKIIKPHLIDPKQLGGRYVVEAEQIIREMEQQYGDKPLRKKKMQKKSRARKKGAEEDMKAGTRLFHPVVLSDDLAAVCRGREMQRQEVVKAVWEYIRMNNLQNQGPPDNPVKCDFLLRKVYNTDYINVRTVMSGISPHLKKKE 260          
BLAST of Gchil7029.t1 vs. uniprot
Match: R7QDF0_CHOCR (Uncharacterized protein n=1 Tax=Chondrus crispus TaxID=2769 RepID=R7QDF0_CHOCR)

HSP 1 Score: 225 bits (574), Expect = 8.340e-70
Identity = 118/262 (45.04%), Postives = 166/262 (63.36%), Query Frame = 0
Query:   14 FASSFLPH-PIPHAASVPSRFVCAARDSPQHDMAVKRGKIPGYVRPIVPAKPLHHFVEDKAQSRADVSKAICAYAKEHNLQDPNDGRIIYCDDVLRSALGVDQCTVLEVLKYATPHFIKPEQLGGRYIQEAIAIERAFL------------DGQPSDGTQKKKTRTKSQARKQTAEEDRKAGRHLFRPMCLTPELAAVCRAPELTRHEVVKAVWEYIHMNNLQGQGPPERPIRCDFLLRKVFNADCINVRTVMSGISPHMRK 262
            F S+   H P+     V  R +     +P      K  ++P  VRP+VP++ L  FVEDKAQ R+ V K++  Y K+H LQDPND RI+ CDD L+  LGV++CT+LE+ KY TPH  KPE +GG+Y+++A   E  +L            +G+P    + +K R  S+    T  ED+  GR LF+P+ L+P+LAAVCR  E+ RHE+VKAVWEYI +NNLQ +  P  PI+CDFLLRKVF++D I+VR +M G++ H++K
Sbjct:   25 FPSTLSRHSPLAPVYRVAPRAISLVATAPGPRSGAKPARVPAIVRPMVPSRDLLQFVEDKAQPRSVVLKSLSKYVKDHELQDPNDRRIVLCDDKLKKLLGVEKCTILEMSKYITPHLSKPETVGGKYLEDAGKFEEEYLRVKAAEAAERLENGEPLKPVKGRKKRRVSK----TNTEDKTKGRRLFKPVLLSPDLAAVCRKQEMPRHEIVKAVWEYIRLNNLQSK--PGEPIKCDFLLRKVFDSDEIDVRAIMKGVAAHVKK 280          
BLAST of Gchil7029.t1 vs. uniprot
Match: A0A5J4Z492_PORPP (Upstream activation factor subunit spp27 n=1 Tax=Porphyridium purpureum TaxID=35688 RepID=A0A5J4Z492_PORPP)

HSP 1 Score: 106 bits (265), Expect = 4.320e-23
Identity = 72/217 (33.18%), Postives = 105/217 (48.39%), Query Frame = 0
Query:   58 PIVPAKPLHHFVEDKAQSRADVSKAICAYAKEHNLQDPNDGRIIYCDDVLRSALGVDQCTVLEVLKYATPHFIKPEQLGGRYIQEAIAI----------ERAFLDGQPSDGTQKKKTRTKSQARKQTAEEDRKAGRHLFRPMCLTPELAAVCRAPELTRHEVVKAVWEYIHMNNLQGQGPPERPIRCDFLLRKVFNA-DCINVRTVMSGISPHMRKK 263
            P+V A PL  F++ +  +R+DVS+ I  YAKEHNLQDPNDGR   CD  L+  L  D  T   + K   P   +  +     ++E   I          E    + Q  DG    ++R + + +K  +  D + G     P  ++ +LAAVC +  L+R EVV+ +W YI  N LQ      R I CD  LR VFN  D +    +   +S H  ++
Sbjct:  131 PVVLAPPLAEFLQARVMARSDVSQRIVKYAKEHNLQDPNDGRNYMCDAALKRLLQTDSFTYFSINKLTAPMMSRAREHPDAAVREEARILEERLLKEANEARAAETQDEDGFSDDESRLRMKKKKARSGPDNR-GNAFKAPYEISDQLAAVCGSNTLSRPEVVRRLWAYIKSNELQDPSN-RRHIICDAKLRAVFNGLDIVTGFNMNKYLSQHFIRR 345          
BLAST of Gchil7029.t1 vs. uniprot
Match: M2X7W6_GALSU (Uncharacterized protein n=1 Tax=Galdieria sulphuraria TaxID=130081 RepID=M2X7W6_GALSU)

HSP 1 Score: 96.7 bits (239), Expect = 5.380e-20
Identity = 66/218 (30.28%), Postives = 113/218 (51.83%), Query Frame = 0
Query:   49 RGKIPGYVRPIVPAKPLHHFVE-DKAQSRADVSKAICAYAKEHNLQDPNDGRIIYCDDVLRSALGVDQCTVLEVLKYATPHFIKPEQLGGRYIQEAIA--IERAFLDGQPSDGTQKKKTRTKSQARKQTAEEDRKAGRHLFRPMCLTPELAAVCRAPELTRHEVVKAVWEYIHMNNLQGQGPPERPIRCDFLLRKVFNA-DCINVRTVMSGISPHMRK 262
            +G   G  +P+   K L   ++      R  + K +  Y K+HNLQDP     I  D+ LRS  GV+  T   + K  +P    PE+     + + +   ++ A L  + S   +K++++ +S  +  T+      G  L +P+ L+  L+ +C A  L+R +VVK VWEYI ++NLQ +   +R I CD LL+++F+  + IN   +   +SPH++K
Sbjct:   74 KGFFTGLRKPLKVDKRLQEILQCGSILPRTQIVKYLNQYIKKHNLQDPEQKNKIVLDNALRSLFGVETATFFSLNKLISPFLTIPEEQEQEMVHQYMKEHLKEALLAAEESKMKRKQQSKVQSLNKGTTSHR----GESLQKPLKLSNLLSQICGAEYLSRSQVVKKVWEYIKLHNLQ-KASDKRNISCDALLKQLFDGKEEINSFHISKYLSPHLQK 286          
BLAST of Gchil7029.t1 vs. uniprot
Match: A0A4P9X441_9FUNG (Uncharacterized protein (Fragment) n=2 Tax=Caulochytrium protostelioides TaxID=1555241 RepID=A0A4P9X441_9FUNG)

HSP 1 Score: 90.9 bits (224), Expect = 8.870e-18
Identity = 73/232 (31.47%), Postives = 106/232 (45.69%), Query Frame = 0
Query:   36 AARDSPQHDMAVKRGKIPGYVRPIVPAKPLHHFVEDKAQSRADVSKAICAYAKEHNLQDPNDGRIIYCDDVLRSALGVDQCTVLEVLKYATPHFIKPEQLGGRYIQEAIAIERAFLDGQPSDGTQKKKTRTK----SQARKQTAEEDRKAGRHLFRPMC-LTPELAAVCRAPELTRHEVVKAVWEYIHMNNLQGQGPPERPIRCDFLLRKVFNADCINVRTVMSGISPHMRK 262
            AA +SP    A     +P Y+ P      L   V+ K  +R +V KA+  Y K+H LQDP+DGR I+CD  L+  LG ++     + K           LG     EA   E       P       K RT     ++  K+ A   RK       P   L+P+LA VC   + TR +VVK +W Y+  N LQ      R I C+ LLR++F  D ++  ++ S +S H+ +
Sbjct:   90 AAVNSPAASRAKNPFSVPQYLSPA-----LVDVVQIKTATRPEVIKALWKYIKDHKLQDPDDGRFIFCDAPLKRVLGKNRANAFAMNKI----------LGAHLRTEAQYSENPHFSEIPMTEDDVVKPRTPGVKGAKGTKRKAAAPRKKRDPSKMPQYRLSPDLAKVCGFEQHTRPQVVKQIWVYVKANQLQDPQDG-RFILCNDLLRRIFETDKVSAFSMNSHLSRHLTR 305          
BLAST of Gchil7029.t1 vs. uniprot
Match: A0A2P4YC68_9STRA (RNA polymerase I upstream activation factor complex subunit Spp27 n=1 Tax=Phytophthora palmivora var. palmivora TaxID=611791 RepID=A0A2P4YC68_9STRA)

HSP 1 Score: 89.0 bits (219), Expect = 9.780e-17
Identity = 66/205 (32.20%), Postives = 98/205 (47.80%), Query Frame = 0
Query:   65 LHHFVEDKAQSRADVSKAICAYAKEHNLQDPNDGRIIYCDDVLRSALGVDQCTVLEVLKYATPHFIKPEQLG-GRYIQEAIAIERAFLDGQPSDGTQKKKTRTKSQARK------QTAEEDRKAGRHLFRPMCLTPELAAVCRAPELTRHEVVKAVWEYIHMNNLQGQGPPERPIRCDFLLRKVFNADCINVRTVMSGISPHMRK 262
            L   V  +  +R  V KA+ AY +EH LQDPN+ + I  DD LR     D  T+  + K+   H  KP+ L  G + Q    I R   DG  SD   + K   K  A        +  EE +K        + ++PELA++  +  + R ++VKA+W YIH +NLQ     +R I  D  +++VF  D   + ++   I  H RK
Sbjct:  149 LAQVVGAETMARPQVVKALWAYIREHQLQDPNNKKTIILDDTLRGVFQRDSFTMFSMNKFVKRHVRKPDDLPPGGWSQ----IPR---DGVSSDEDTEAKAAKKKPAXXXXXAVTEDGEEGKKKSNPFNTELSVSPELASLVGSDRMARPQIVKALWAYIHEHNLQDPDD-KRTILLDDRMKQVFQRDSFTMFSMNKYIKRHARK 345          
BLAST of Gchil7029.t1 vs. uniprot
Match: M4C0A8_HYAAE (Uncharacterized protein n=1 Tax=Hyaloperonospora arabidopsidis (strain Emoy2) TaxID=559515 RepID=M4C0A8_HYAAE)

HSP 1 Score: 85.1 bits (209), Expect = 2.320e-15
Identity = 68/223 (30.49%), Postives = 104/223 (46.64%), Query Frame = 0
Query:   48 KRGKIPGYVRPIVPAKPLHHFVEDKAQSRADVSKAICAYAKEHNLQDPNDGRIIYCDDVLRSALGVDQCTVLEVLKYATPHFIKPEQLG-GRYIQEAIAIERAFLDGQPSDGTQKKKTRTK------SQARKQTAEEDRKAGRHLFR-PMCLTPELAAVCRAPELTRHEVVKAVWEYIHMNNLQGQGPPERPIRCDFLLRKVFNADCINVRTVMSGISPHMRK 262
            K+  + G+   +  +  L   V     +R  V KA+ AY +EHNLQDPN+ + I  DD LR+    +  T+  + K+   H  KP+ L  G + Q    I R   DG  SD   + K + K              + D K   H F   + L+PELA++     + R ++VKA+W YIH + LQ     +R I  D  +++VF  D   + ++   I  H RK
Sbjct:  134 KKNAVGGFNAKLCLSPELARVVGADRMARPQVVKALWAYIREHNLQDPNNKKSIILDDTLRAVFQRESFTMFSMNKFVKRHVRKPDDLPPGGWSQ----IPR---DGVSSDEDTEVKPKKKVXXXXXXXXXXXXGDNDSKTKTHAFNVELSLSPELASLVGTDLMARPQIVKALWAYIHEHELQDPQD-KRTILLDDRMQRVFQRDSFTMFSMNKFIKRHARK 348          
BLAST of Gchil7029.t1 vs. uniprot
Match: UPI00053FCDBF (uncharacterized protein LOC104895589 isoform X1 n=2 Tax=Beta vulgaris subsp. vulgaris TaxID=3555 RepID=UPI00053FCDBF)

HSP 1 Score: 83.6 bits (205), Expect = 4.760e-15
Identity = 60/200 (30.00%), Postives = 90/200 (45.00%), Query Frame = 0
Query:   65 LHHFVEDKAQSRADVSKAICAYAKEHNLQDPNDGRIIYCDDVLRSALGVDQCTVLEVLKYATPHFIKPEQLGGRYIQEAIAIERAFLDGQPSDGTQKKKTRTKSQARKQTAEEDRKAGRHLFRPMCLTPELAAVCRAPE--LTRHEVVKAVWEYIHMNNLQGQGPPERPIRCDFLLRKVFNADCINVRTVMSGISPHMRK 262
            L  F+     +R +V K + +Y ++ NLQDP+DG+ I CD+ LR  LGV    +L++ K  T H     +   R  Q     E    + +  +  QKK                         P+ L+  L       E  LTR +V+K VWEYI +NNLQ     ++ + CD  L+++FN D  +  TV   +S H  K
Sbjct:  139 LQKFLGVPHMTRTEVVKRLWSYVRDKNLQDPHDGKSIMCDETLRELLGVGSINILQINKALTKHISPSVKSMKRDKQRKQEREEDLYEAELKEKRQKK------------------VYSGFLAPLPLSHTLIKFLGTGESALTRADVIKRVWEYIKINNLQDPFN-KKTVICDEKLKELFNVDSFHGFTVSKLLSAHFVK 319          
BLAST of Gchil7029.t1 vs. uniprot
Match: A0A3R7MMU7_9STRA (Uncharacterized protein n=3 Tax=Phytophthora kernoviae TaxID=325452 RepID=A0A3R7MMU7_9STRA)

HSP 1 Score: 83.6 bits (205), Expect = 1.090e-14
Identity = 59/201 (29.35%), Postives = 94/201 (46.77%), Query Frame = 0
Query:   65 LHHFVEDKAQSRADVSKAICAYAKEHNLQDPNDGRIIYCDDVLRSALGVDQCTVLEVLKYATPHFIKPEQL--GGRYIQEAIAIERAFLDGQPSDGTQKKKTRTKSQARKQTAEED-RKAGRHLFRPMCLTPELAAVCRAPELTRHEVVKAVWEYIHMNNLQGQGPPERPIRCDFLLRKVFNADCINVRTVMSGISPHMRK 262
            L   V  +  +R  + KA+ AY +EHNLQDPN+ + I  DD L++    D  T+  + K+   H  KP  L  GG      I  +    D        KKK            ++D +K     +  + L+PEL ++  + ++ R ++V+A+W YIH ++LQ     +R I  D  +R VF  D   + ++   I  H RK
Sbjct:  212 LAEVVGAETMARPQIVKALWAYIREHNLQDPNNKKTIIFDDTLKNVFQRDSVTMFSMNKFVKRHVRKPADLPPGG---WSEIPRDGVSSDEDTEAKAAKKKPAXXXXXXXXXEDDDGKKKANPFYTELSLSPELGSLLGSDQMARPKIVQALWAYIHEHDLQDPSD-KRTIVLDDRMRGVFQRDSFTMFSMNKYIKRHARK 408          
BLAST of Gchil7029.t1 vs. uniprot
Match: G4YNY9_PHYSP (Uncharacterized protein n=1 Tax=Phytophthora sojae (strain P6497) TaxID=1094619 RepID=G4YNY9_PHYSP)

HSP 1 Score: 82.8 bits (203), Expect = 1.520e-14
Identity = 57/201 (28.36%), Postives = 88/201 (43.78%), Query Frame = 0
Query:   65 LHHFVEDKAQSRADVSKAICAYAKEHNLQDPNDGRIIYCDDVLRSALGVDQCTVLEVLKYATPHFIKPEQL---GGRYIQEAIAIERAFLDGQPSDGTQKKKTRTKSQARKQTAEEDRKAGRHLFRPMCLTPELAAVCRAPELTRHEVVKAVWEYIHMNNLQGQGPPERPIRCDFLLRKVFNADCINVRTVMSGISPHMRK 262
            L   V  +  +R  V KA+ AY +EHNLQDP + ++I  DD LR     D  T+  + K+   H  KP+ +   G   I           + +P+                       K     +  + ++PELA++     + R E+VKA+W YIH +NLQ     +R I  D  +R+VF  D   + ++   I  H RK
Sbjct:  150 LAQVVGAETMARPQVVKALWAYIREHNLQDPKNKKLILLDDTLRGVFQRDSFTMFSMNKFVKRHVRKPDDMPPGGWSQIPRDGVSSDEDTEAKPAKKXXXXXXXXXXXXXXXXXXXXXKKANPFYTELAVSPELASLLGRDRMARPEIVKALWAYIHEHNLQDPQD-KRTILLDDRMRQVFQRDSFTMFSMNKYIKRHARK 349          
The following BLAST results are available for this feature:
BLAST of Gchil7029.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A2V3J822_9FLOR3.920e-8354.72Upstream activation factor subunit UAF30 n=1 Tax=G... [more]
R7QDF0_CHOCR8.340e-7045.04Uncharacterized protein n=1 Tax=Chondrus crispus T... [more]
A0A5J4Z492_PORPP4.320e-2333.18Upstream activation factor subunit spp27 n=1 Tax=P... [more]
M2X7W6_GALSU5.380e-2030.28Uncharacterized protein n=1 Tax=Galdieria sulphura... [more]
A0A4P9X441_9FUNG8.870e-1831.47Uncharacterized protein (Fragment) n=2 Tax=Cauloch... [more]
A0A2P4YC68_9STRA9.780e-1732.20RNA polymerase I upstream activation factor comple... [more]
M4C0A8_HYAAE2.320e-1530.49Uncharacterized protein n=1 Tax=Hyaloperonospora a... [more]
UPI00053FCDBF4.760e-1530.00uncharacterized protein LOC104895589 isoform X1 n=... [more]
A0A3R7MMU7_9STRA1.090e-1429.35Uncharacterized protein n=3 Tax=Phytophthora kerno... [more]
G4YNY9_PHYSP1.520e-1428.36Uncharacterized protein n=1 Tax=Phytophthora sojae... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR019835SWIB domainSMARTSM00151swib_2coord: 185..264
e-value: 1.5E-7
score: 41.1
coord: 55..134
e-value: 1.2E-15
score: 68.0
IPR036885SWIB/MDM2 domain superfamilyGENE3D1.10.245.10SWIB/MDM2 domaincoord: 52..136
e-value: 6.7E-18
score: 66.5
coord: 180..264
e-value: 9.9E-18
score: 65.9
IPR036885SWIB/MDM2 domain superfamilySUPERFAMILY47592SWIB/MDM2 domaincoord: 182..262
IPR036885SWIB/MDM2 domain superfamilySUPERFAMILY47592SWIB/MDM2 domaincoord: 51..135
IPR003121SWIB/MDM2 domainPFAMPF02201SWIBcoord: 188..260
e-value: 3.6E-16
score: 58.8
coord: 60..129
e-value: 3.4E-17
score: 62.0
IPR003121SWIB/MDM2 domainPROSITEPS51925SWIB_MDM2coord: 184..262
score: 12.939167
IPR003121SWIB/MDM2 domainPROSITEPS51925SWIB_MDM2coord: 54..131
score: 16.234789
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 158..179
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 155..179
NoneNo IPR availablePANTHERPTHR13844SWI/SNF-RELATED MATRIX-ASSOCIATED ACTIN-DEPENDENT REGULATOR OF CHROMATIN SUBFAMILY Dcoord: 47..129
coord: 158..259
NoneNo IPR availableCDDcd10567SWIB-MDM2_likecoord: 63..129
e-value: 3.64908E-21
score: 82.5913
NoneNo IPR availableCDDcd10567SWIB-MDM2_likecoord: 191..260
e-value: 4.52338E-22
score: 84.9025

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000131_piloncontigtig00000131_pilon:221006..221800 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-06-01
Diamond blastp: OGS1.0 vs UniRef902022-06-02
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil7029.t1Gchil7029.t1Gracilaria chilensis NLEC103_M9 malemRNAtig00000131_pilon 221006..221800 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Gchil7029.t1 ID=Gchil7029.t1|Name=Gchil7029.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=265bp
MPLETSHSVRLPAFASSFLPHPIPHAASVPSRFVCAARDSPQHDMAVKRG
KIPGYVRPIVPAKPLHHFVEDKAQSRADVSKAICAYAKEHNLQDPNDGRI
IYCDDVLRSALGVDQCTVLEVLKYATPHFIKPEQLGGRYIQEAIAIERAF
LDGQPSDGTQKKKTRTKSQARKQTAEEDRKAGRHLFRPMCLTPELAAVCR
APELTRHEVVKAVWEYIHMNNLQGQGPPERPIRCDFLLRKVFNADCINVR
TVMSGISPHMRKKE*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR019835SWIB_domain
IPR036885SWIB_MDM2_dom_sf
IPR003121SWIB_MDM2_domain