Gchil7028.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gchil7028.t1
Unique Name	Gchil7028.t1
Type	mRNA
Organism	Gracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length	608

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
tig00000131_pilon	contig	tig00000131_pilon:218895..220718 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria chilensis NLEC103_M9 male OGS1.0	2022-05-09

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gchil7028	Gchil7028	Gracilaria chilensis NLEC103_M9 male	gene	tig00000131_pilon 218895..220718 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil7028.t1.start1	Gchil7028.t1.start1	Gracilaria chilensis NLEC103_M9 male	start_codon	tig00000131_pilon 218895..218897 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil7028.t1.CDS1	Gchil7028.t1.CDS1	Gracilaria chilensis NLEC103_M9 male	CDS	tig00000131_pilon 218895..220718 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil7028.t1.exon1	Gchil7028.t1.exon1	Gracilaria chilensis NLEC103_M9 male	exon	tig00000131_pilon 218895..220718 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil7028.t1.stop1	Gchil7028.t1.stop1	Gracilaria chilensis NLEC103_M9 male	stop_codon	tig00000131_pilon 220716..220718 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil7028.t1	Gchil7028.t1	Gracilaria chilensis NLEC103_M9 male	polypeptide	tig00000131_pilon 218895..220718 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at tig00000131_pilon:218895..220718+
coding sequence from alignment at tig00000131_pilon:218895..220718+

mRNA sequence

>Gchil7028.t1 ID=Gchil7028.t1|Name=Gchil7028.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=608bp
MYLSKLLQFLVFLRLAATAFSGTSYKSAFRYQSATDVNDLSKSLFSPHED
PLADEDRWSALSDIQREAWTASNVFIRFSEGIRDVLRATAHLRESSILLY
INVQIIAPEYFITPEEERRISHYATAMSAGSNGTSLMFNVSMAPKHLFRR
VAMHSPSDDPNRFMALLQQTAATIGSAHVMYVIINHGDDPINHYEARTPF
LGTGRTSWVLYTVEKKKSLNVADLLSSIEHIAERVYAPKPLYFPVPFIRE
LTVQVSAYTPGFEHRARWLDNFDWNGFEDFVRKVADHGQHLRFSSSQVNS
DCPACGKAFRDAEKPSREFVKRAALTLNENASLNHTWANGVPASPTRQRI
PPNTFRMYVLDLHKTRQSESVQRLENKPLSFFPGMGILTLRSTEKDSVVA
LDTLFVQAFAAAVHGISEPNLYHTLQRGQRSSKQGKPSKVMADIANRYLV
RSIVETRVNELEEIIEGILYFDIDPAKSLGDLQYTYFSQRVNLMLLKLQH
AQQSLSDAHDAETAVYLAASTIHDIRAIRAAFDLDEEKDSFERFRDPTIR
CHFSRLKREALRASYFLESDSMLLHMLCCVLVFLGSAGISNFILWKYTAW
KRRGKRE*

spliced messenger RNA

>Gchil7028.t1 ID=Gchil7028.t1|Name=Gchil7028.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1824bp|location=Sequence derived from alignment at tig00000131_pilon:218895..220718+ (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGTATCTAAGCAAACTTTTACAATTCTTAGTTTTCCTACGGCTTGCGGC
CACGGCTTTTAGTGGAACAAGCTACAAATCAGCTTTTCGATACCAGTCGG
CGACAGATGTGAATGATCTGAGCAAGTCTTTGTTCTCTCCACATGAGGAT
CCTTTGGCTGATGAGGATAGGTGGTCAGCTTTGTCGGATATTCAACGCGA
GGCATGGACAGCGTCAAATGTATTTATCCGCTTTTCAGAAGGAATACGGG
ACGTTCTACGAGCTACGGCTCACTTGCGTGAGTCTTCCATACTTCTTTAC
ATCAACGTTCAGATCATTGCTCCCGAGTATTTTATTACCCCTGAAGAAGA
ACGGAGGATATCTCACTATGCCACAGCCATGTCTGCTGGATCCAACGGTA
CTTCTCTCATGTTCAACGTTTCTATGGCCCCGAAACATTTGTTTAGAAGA
GTAGCAATGCATTCCCCTTCAGATGACCCCAATCGCTTTATGGCTCTACT
TCAGCAGACAGCTGCTACGATAGGATCAGCTCACGTCATGTACGTGATTA
TCAACCACGGTGATGATCCTATCAACCACTATGAAGCTCGGACGCCATTT
CTGGGAACTGGAAGGACTTCCTGGGTGTTATACACCGTCGAGAAGAAGAA
GTCTCTCAACGTCGCGGATCTTCTGTCTTCAATAGAGCACATTGCCGAAC
GCGTTTATGCTCCCAAGCCGCTTTATTTTCCTGTACCTTTTATCCGAGAA
CTAACTGTTCAAGTTTCCGCTTACACCCCTGGCTTCGAACATCGCGCACG
CTGGCTCGATAACTTTGATTGGAACGGCTTTGAAGATTTTGTGAGGAAGG
TTGCTGATCATGGTCAACATCTTCGATTCTCCTCTTCACAGGTGAACAGC
GATTGCCCGGCGTGTGGGAAGGCTTTTCGTGACGCAGAGAAACCTTCCCG
AGAATTTGTCAAACGTGCAGCCCTGACTCTCAACGAGAACGCATCTTTGA
ATCATACTTGGGCAAATGGCGTACCCGCTTCTCCCACACGTCAGCGAATT
CCCCCAAACACCTTTCGCATGTACGTTTTGGACTTACACAAAACAAGACA
AAGTGAATCTGTACAGCGTTTAGAAAACAAGCCCTTGTCCTTCTTTCCTG
GAATGGGAATCCTGACTCTTCGATCCACCGAAAAAGACTCCGTTGTCGCA
TTGGACACTCTTTTCGTACAAGCTTTCGCTGCTGCAGTTCACGGCATCTC
GGAACCTAACCTTTATCATACTTTGCAACGAGGACAAAGATCAAGTAAAC
AAGGAAAGCCCTCCAAGGTCATGGCAGATATCGCAAATCGGTACCTCGTA
CGCTCTATCGTTGAGACGCGCGTCAACGAGCTCGAAGAAATCATTGAGGG
AATTCTGTATTTTGATATCGACCCTGCCAAGTCACTAGGTGACCTACAAT
ATACATACTTCTCACAACGGGTTAACCTAATGCTACTTAAGCTTCAACAT
GCACAACAAAGCTTGTCAGATGCACATGATGCGGAAACAGCTGTTTACCT
TGCCGCTTCTACCATACATGACATTCGAGCCATTCGCGCCGCATTCGACT
TGGATGAAGAAAAAGATTCTTTTGAGCGCTTTCGTGATCCGACTATTAGG
TGCCACTTTTCCAGGCTAAAACGAGAAGCTTTGAGAGCGTCATACTTCCT
GGAGTCTGACTCTATGTTGCTTCATATGCTCTGTTGTGTGTTGGTGTTCT
TGGGCTCCGCAGGAATATCTAACTTCATCTTATGGAAGTATACCGCTTGG
AAACGACGAGGAAAACGAGAATAG

protein sequence of Gchil7028.t1

>Gchil7028.t1 ID=Gchil7028.t1|Name=Gchil7028.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=608bp
MYLSKLLQFLVFLRLAATAFSGTSYKSAFRYQSATDVNDLSKSLFSPHED
PLADEDRWSALSDIQREAWTASNVFIRFSEGIRDVLRATAHLRESSILLY
INVQIIAPEYFITPEEERRISHYATAMSAGSNGTSLMFNVSMAPKHLFRR
VAMHSPSDDPNRFMALLQQTAATIGSAHVMYVIINHGDDPINHYEARTPF
LGTGRTSWVLYTVEKKKSLNVADLLSSIEHIAERVYAPKPLYFPVPFIRE
LTVQVSAYTPGFEHRARWLDNFDWNGFEDFVRKVADHGQHLRFSSSQVNS
DCPACGKAFRDAEKPSREFVKRAALTLNENASLNHTWANGVPASPTRQRI
PPNTFRMYVLDLHKTRQSESVQRLENKPLSFFPGMGILTLRSTEKDSVVA
LDTLFVQAFAAAVHGISEPNLYHTLQRGQRSSKQGKPSKVMADIANRYLV
RSIVETRVNELEEIIEGILYFDIDPAKSLGDLQYTYFSQRVNLMLLKLQH
AQQSLSDAHDAETAVYLAASTIHDIRAIRAAFDLDEEKDSFERFRDPTIR
CHFSRLKREALRASYFLESDSMLLHMLCCVLVFLGSAGISNFILWKYTAW
KRRGKRE*

mRNA from alignment at tig00000131_pilon:218895..220718+

Legend: start_codonpolypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gchil7028.t1 ID=Gchil7028.t1|Name=Gchil7028.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1824bp|location=Sequence derived from alignment at tig00000131_pilon:218895..220718+ (Gracilaria chilensis NLEC103_M9 male)
ATGTATCTAAGCAAACTTTTACAATTCTTAGTTTTCCTACGGCTTGCGGC
CACGGCTTTTAGTGGAACAAGCTACAAATCAGCTTTTCGATACCAGTCGG
CGACAGATGTGAATGATCTGAGCAAGTCTTTGTTCTCTCCACATGAGGAT
CCTTTGGCTGATGAGGATAGGTGGTCAGCTTTGTCGGATATTCAACGCGA
GGCATGGACAGCGTCAAATGTATTTATCCGCTTTTCAGAAGGAATACGGG
ACGTTCTACGAGCTACGGCTCACTTGCGTGAGTCTTCCATACTTCTTTAC
ATCAACGTTCAGATCATTGCTCCCGAGTATTTTATTACCCCTGAAGAAGA
ACGGAGGATATCTCACTATGCCACAGCCATGTCTGCTGGATCCAACGGTA
CTTCTCTCATGTTCAACGTTTCTATGGCCCCGAAACATTTGTTTAGAAGA
GTAGCAATGCATTCCCCTTCAGATGACCCCAATCGCTTTATGGCTCTACT
TCAGCAGACAGCTGCTACGATAGGATCAGCTCACGTCATGTACGTGATTA
TCAACCACGGTGATGATCCTATCAACCACTATGAAGCTCGGACGCCATTT
CTGGGAACTGGAAGGACTTCCTGGGTGTTATACACCGTCGAGAAGAAGAA
GTCTCTCAACGTCGCGGATCTTCTGTCTTCAATAGAGCACATTGCCGAAC
GCGTTTATGCTCCCAAGCCGCTTTATTTTCCTGTACCTTTTATCCGAGAA
CTAACTGTTCAAGTTTCCGCTTACACCCCTGGCTTCGAACATCGCGCACG
CTGGCTCGATAACTTTGATTGGAACGGCTTTGAAGATTTTGTGAGGAAGG
TTGCTGATCATGGTCAACATCTTCGATTCTCCTCTTCACAGGTGAACAGC
GATTGCCCGGCGTGTGGGAAGGCTTTTCGTGACGCAGAGAAACCTTCCCG
AGAATTTGTCAAACGTGCAGCCCTGACTCTCAACGAGAACGCATCTTTGA
ATCATACTTGGGCAAATGGCGTACCCGCTTCTCCCACACGTCAGCGAATT
CCCCCAAACACCTTTCGCATGTACGTTTTGGACTTACACAAAACAAGACA
AAGTGAATCTGTACAGCGTTTAGAAAACAAGCCCTTGTCCTTCTTTCCTG
GAATGGGAATCCTGACTCTTCGATCCACCGAAAAAGACTCCGTTGTCGCA
TTGGACACTCTTTTCGTACAAGCTTTCGCTGCTGCAGTTCACGGCATCTC
GGAACCTAACCTTTATCATACTTTGCAACGAGGACAAAGATCAAGTAAAC
AAGGAAAGCCCTCCAAGGTCATGGCAGATATCGCAAATCGGTACCTCGTA
CGCTCTATCGTTGAGACGCGCGTCAACGAGCTCGAAGAAATCATTGAGGG
AATTCTGTATTTTGATATCGACCCTGCCAAGTCACTAGGTGACCTACAAT
ATACATACTTCTCACAACGGGTTAACCTAATGCTACTTAAGCTTCAACAT
GCACAACAAAGCTTGTCAGATGCACATGATGCGGAAACAGCTGTTTACCT
TGCCGCTTCTACCATACATGACATTCGAGCCATTCGCGCCGCATTCGACT
TGGATGAAGAAAAAGATTCTTTTGAGCGCTTTCGTGATCCGACTATTAGG
TGCCACTTTTCCAGGCTAAAACGAGAAGCTTTGAGAGCGTCATACTTCCT
GGAGTCTGACTCTATGTTGCTTCATATGCTCTGTTGTGTGTTGGTGTTCT
TGGGCTCCGCAGGAATATCTAACTTCATCTTATGGAAGTATACCGCTTGG
AAACGACGAGGAAAACGAGAATAG

Coding sequence (CDS) from alignment at tig00000131_pilon:218895..220718+

>Gchil7028.t1 ID=Gchil7028.t1|Name=Gchil7028.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=1824bp|location=Sequence derived from alignment at tig00000131_pilon:218895..220718+ (Gracilaria chilensis NLEC103_M9 male)
ATGTATCTAAGCAAACTTTTACAATTCTTAGTTTTCCTACGGCTTGCGGC
CACGGCTTTTAGTGGAACAAGCTACAAATCAGCTTTTCGATACCAGTCGG
CGACAGATGTGAATGATCTGAGCAAGTCTTTGTTCTCTCCACATGAGGAT
CCTTTGGCTGATGAGGATAGGTGGTCAGCTTTGTCGGATATTCAACGCGA
GGCATGGACAGCGTCAAATGTATTTATCCGCTTTTCAGAAGGAATACGGG
ACGTTCTACGAGCTACGGCTCACTTGCGTGAGTCTTCCATACTTCTTTAC
ATCAACGTTCAGATCATTGCTCCCGAGTATTTTATTACCCCTGAAGAAGA
ACGGAGGATATCTCACTATGCCACAGCCATGTCTGCTGGATCCAACGGTA
CTTCTCTCATGTTCAACGTTTCTATGGCCCCGAAACATTTGTTTAGAAGA
GTAGCAATGCATTCCCCTTCAGATGACCCCAATCGCTTTATGGCTCTACT
TCAGCAGACAGCTGCTACGATAGGATCAGCTCACGTCATGTACGTGATTA
TCAACCACGGTGATGATCCTATCAACCACTATGAAGCTCGGACGCCATTT
CTGGGAACTGGAAGGACTTCCTGGGTGTTATACACCGTCGAGAAGAAGAA
GTCTCTCAACGTCGCGGATCTTCTGTCTTCAATAGAGCACATTGCCGAAC
GCGTTTATGCTCCCAAGCCGCTTTATTTTCCTGTACCTTTTATCCGAGAA
CTAACTGTTCAAGTTTCCGCTTACACCCCTGGCTTCGAACATCGCGCACG
CTGGCTCGATAACTTTGATTGGAACGGCTTTGAAGATTTTGTGAGGAAGG
TTGCTGATCATGGTCAACATCTTCGATTCTCCTCTTCACAGGTGAACAGC
GATTGCCCGGCGTGTGGGAAGGCTTTTCGTGACGCAGAGAAACCTTCCCG
AGAATTTGTCAAACGTGCAGCCCTGACTCTCAACGAGAACGCATCTTTGA
ATCATACTTGGGCAAATGGCGTACCCGCTTCTCCCACACGTCAGCGAATT
CCCCCAAACACCTTTCGCATGTACGTTTTGGACTTACACAAAACAAGACA
AAGTGAATCTGTACAGCGTTTAGAAAACAAGCCCTTGTCCTTCTTTCCTG
GAATGGGAATCCTGACTCTTCGATCCACCGAAAAAGACTCCGTTGTCGCA
TTGGACACTCTTTTCGTACAAGCTTTCGCTGCTGCAGTTCACGGCATCTC
GGAACCTAACCTTTATCATACTTTGCAACGAGGACAAAGATCAAGTAAAC
AAGGAAAGCCCTCCAAGGTCATGGCAGATATCGCAAATCGGTACCTCGTA
CGCTCTATCGTTGAGACGCGCGTCAACGAGCTCGAAGAAATCATTGAGGG
AATTCTGTATTTTGATATCGACCCTGCCAAGTCACTAGGTGACCTACAAT
ATACATACTTCTCACAACGGGTTAACCTAATGCTACTTAAGCTTCAACAT
GCACAACAAAGCTTGTCAGATGCACATGATGCGGAAACAGCTGTTTACCT
TGCCGCTTCTACCATACATGACATTCGAGCCATTCGCGCCGCATTCGACT
TGGATGAAGAAAAAGATTCTTTTGAGCGCTTTCGTGATCCGACTATTAGG
TGCCACTTTTCCAGGCTAAAACGAGAAGCTTTGAGAGCGTCATACTTCCT
GGAGTCTGACTCTATGTTGCTTCATATGCTCTGTTGTGTGTTGGTGTTCT
TGGGCTCCGCAGGAATATCTAACTTCATCTTATGGAAGTATACCGCTTGG
AAACGACGAGGAAAACGAGAATAG