Gchil7033.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gchil7033.t1
Unique Name	Gchil7033.t1
Type	mRNA
Organism	Gracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length	493

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
tig00000131_pilon	contig	tig00000131_pilon:231462..232940 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria chilensis NLEC103_M9 male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	85681.XP_006445884.1
PFAMs	NLE,WD40
Max annot lvl	35493\|Streptophyta
KEGG ko	ko:K14855
GOs	GO:0000027,GO:0000151,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005730,GO:0005737,GO:0005840,GO:0006996,GO:0007275,GO:0008150,GO:0009553,GO:0009987,GO:0016043,GO:0022607,GO:0022613,GO:0022618,GO:0031461,GO:0031974,GO:0031981,GO:0032501,GO:0032502,GO:0032991,GO:0034622,GO:0042254,GO:0042255,GO:0042273,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043933,GO:0044085,GO:0044422,GO:0044424,GO:0044428,GO:0044444,GO:0044446,GO:0044464,GO:0048229,GO:0048856,GO:0065003,GO:0070013,GO:0070925,GO:0071826,GO:0071840,GO:0080008,GO:1902494,GO:1990234,GO:1990904
Evalue	1.57e-86
EggNOG OGs	KOG0271@1\|root,KOG0271@2759\|Eukaryota,37PY7@33090\|Viridiplantae,3G848@35493\|Streptophyta
Description	Notchless protein homolog
COG category	S
BRITE	ko00000,ko03009

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gchil7033	Gchil7033	Gracilaria chilensis NLEC103_M9 male	gene	tig00000131_pilon 231462..232940 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil7033.t1.start1	Gchil7033.t1.start1	Gracilaria chilensis NLEC103_M9 male	start_codon	tig00000131_pilon 231462..231464 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil7033.t1.CDS1	Gchil7033.t1.CDS1	Gracilaria chilensis NLEC103_M9 male	CDS	tig00000131_pilon 231462..232940 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil7033.t1.exon1	Gchil7033.t1.exon1	Gracilaria chilensis NLEC103_M9 male	exon	tig00000131_pilon 231462..232940 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil7033.t1.stop1	Gchil7033.t1.stop1	Gracilaria chilensis NLEC103_M9 male	stop_codon	tig00000131_pilon 232938..232940 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil7033.t1	Gchil7033.t1	Gracilaria chilensis NLEC103_M9 male	polypeptide	tig00000131_pilon 231462..232940 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at tig00000131_pilon:231462..232940+
coding sequence from alignment at tig00000131_pilon:231462..232940+

mRNA sequence

>Gchil7033.t1 ID=Gchil7033.t1|Name=Gchil7033.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=493bp
MEPPRQPANEPDADAQSASSALVQLFSQQGHAVGAVLDVPLSSTPKQLTE
LLNHLLQNDTPLPYAFFLRGTRDPLSQTLRHTLEHGLHLRETVAELEFVP
LSLFRVRPLSRCSASLPGHKEAVLVACFSPDCTLIATGSGDATVRLWNAA
AQLPKLSLVGHRDWVLALAFSPDSSRLASASKDGRVWVWDVQQGTGKMLA
SHRKWVTDLSWKPYHLDHTCRLLVSSSKDATLKIWNVATMSSIKMLAGHT
AAVTTVVWSGEAFIYSASQDRTIKIWNPDTGLPICTINAHAHWVNSITLS
TSYILKCGAFAALDEQNGYTPNKLSREEALERYKKVKIDSTGGKELMVSG
SDDFTLMLWEDVWKGTKSIKPIARMTGHQQLVNCVAFSPDGRYIASASFD
KSVRLWDGKNGRFCFTFRGHVAAVYRVVWSADGRLLMSGSKDSTCKVWDI
GTKKLKMDLPGHSDEVFTVDWSTDGKRAVSAGKDKLVKIWHH*

spliced messenger RNA

>Gchil7033.t1 ID=Gchil7033.t1|Name=Gchil7033.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1479bp|location=Sequence derived from alignment at tig00000131_pilon:231462..232940+ (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGAGCCCCCGCGCCAGCCCGCCAACGAGCCCGACGCTGACGCACAGTC
CGCGTCTTCCGCGCTCGTGCAGCTGTTTTCGCAGCAAGGACACGCCGTCG
GCGCTGTGCTGGATGTGCCGCTATCCTCCACGCCCAAGCAACTCACCGAA
TTGCTCAACCATCTGCTGCAGAATGACACCCCTTTGCCGTATGCTTTCTT
TCTGCGTGGCACTCGCGACCCGCTCTCACAAACTTTGCGACACACTTTGG
AACACGGTTTGCATTTGAGAGAGACCGTGGCCGAGTTGGAGTTCGTGCCG
CTGTCGCTGTTTCGAGTCAGACCGCTTTCTAGATGTAGTGCCAGCTTGCC
GGGCCATAAGGAGGCCGTCTTGGTTGCCTGTTTCTCCCCTGATTGCACCT
TGATTGCTACGGGCTCCGGCGATGCTACCGTGAGACTGTGGAATGCTGCC
GCCCAACTACCGAAGCTCTCCTTGGTTGGCCATCGCGATTGGGTGCTCGC
CTTGGCCTTCTCACCTGACTCAAGTCGATTGGCATCGGCCTCCAAGGATG
GTCGCGTCTGGGTTTGGGACGTTCAACAAGGCACCGGAAAAATGTTAGCT
TCCCATCGCAAATGGGTCACGGATTTGTCTTGGAAACCTTATCATTTGGA
TCATACATGTCGTTTGTTGGTTTCTTCTTCAAAGGACGCCACTCTCAAAA
TTTGGAACGTTGCTACCATGAGTTCGATCAAGATGCTCGCTGGCCATACT
GCTGCCGTCACTACTGTTGTTTGGAGCGGCGAAGCATTTATATACTCTGC
CTCCCAGGATAGGACCATAAAGATTTGGAACCCTGACACTGGTTTGCCTA
TTTGTACCATTAACGCCCATGCACATTGGGTCAATTCCATCACTCTTTCT
ACCAGCTACATCCTCAAGTGCGGGGCATTTGCTGCCTTGGATGAGCAGAA
CGGATACACTCCGAACAAGTTGTCAAGGGAAGAGGCTTTAGAGCGTTACA
AAAAAGTAAAGATCGATTCCACCGGCGGTAAAGAACTCATGGTAAGTGGG
TCTGACGATTTCACTCTCATGCTTTGGGAGGATGTTTGGAAAGGTACAAA
ATCCATAAAGCCAATTGCTCGAATGACAGGACATCAGCAGTTGGTAAATT
GCGTGGCGTTCAGTCCAGATGGACGATACATTGCGTCGGCCAGTTTTGAC
AAAAGTGTAAGATTATGGGATGGAAAGAACGGAAGGTTTTGTTTTACGTT
CCGTGGACATGTCGCGGCAGTTTATAGAGTGGTCTGGTCGGCTGATGGCC
GATTATTGATGAGTGGTTCGAAAGATAGTACGTGTAAGGTTTGGGATATT
GGGACGAAGAAATTGAAGATGGACCTCCCTGGACATAGTGATGAGGTTTT
TACCGTAGATTGGAGCACGGATGGCAAGAGAGCTGTTTCAGCGGGAAAGG
ATAAGCTTGTGAAGATTTGGCATCACTGA

protein sequence of Gchil7033.t1

>Gchil7033.t1 ID=Gchil7033.t1|Name=Gchil7033.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=493bp
MEPPRQPANEPDADAQSASSALVQLFSQQGHAVGAVLDVPLSSTPKQLTE
LLNHLLQNDTPLPYAFFLRGTRDPLSQTLRHTLEHGLHLRETVAELEFVP
LSLFRVRPLSRCSASLPGHKEAVLVACFSPDCTLIATGSGDATVRLWNAA
AQLPKLSLVGHRDWVLALAFSPDSSRLASASKDGRVWVWDVQQGTGKMLA
SHRKWVTDLSWKPYHLDHTCRLLVSSSKDATLKIWNVATMSSIKMLAGHT
AAVTTVVWSGEAFIYSASQDRTIKIWNPDTGLPICTINAHAHWVNSITLS
TSYILKCGAFAALDEQNGYTPNKLSREEALERYKKVKIDSTGGKELMVSG
SDDFTLMLWEDVWKGTKSIKPIARMTGHQQLVNCVAFSPDGRYIASASFD
KSVRLWDGKNGRFCFTFRGHVAAVYRVVWSADGRLLMSGSKDSTCKVWDI
GTKKLKMDLPGHSDEVFTVDWSTDGKRAVSAGKDKLVKIWHH*

mRNA from alignment at tig00000131_pilon:231462..232940+

Legend: start_codonpolypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gchil7033.t1 ID=Gchil7033.t1|Name=Gchil7033.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1479bp|location=Sequence derived from alignment at tig00000131_pilon:231462..232940+ (Gracilaria chilensis NLEC103_M9 male)
ATGGAGCCCCCGCGCCAGCCCGCCAACGAGCCCGACGCTGACGCACAGTC
CGCGTCTTCCGCGCTCGTGCAGCTGTTTTCGCAGCAAGGACACGCCGTCG
GCGCTGTGCTGGATGTGCCGCTATCCTCCACGCCCAAGCAACTCACCGAA
TTGCTCAACCATCTGCTGCAGAATGACACCCCTTTGCCGTATGCTTTCTT
TCTGCGTGGCACTCGCGACCCGCTCTCACAAACTTTGCGACACACTTTGG
AACACGGTTTGCATTTGAGAGAGACCGTGGCCGAGTTGGAGTTCGTGCCG
CTGTCGCTGTTTCGAGTCAGACCGCTTTCTAGATGTAGTGCCAGCTTGCC
GGGCCATAAGGAGGCCGTCTTGGTTGCCTGTTTCTCCCCTGATTGCACCT
TGATTGCTACGGGCTCCGGCGATGCTACCGTGAGACTGTGGAATGCTGCC
GCCCAACTACCGAAGCTCTCCTTGGTTGGCCATCGCGATTGGGTGCTCGC
CTTGGCCTTCTCACCTGACTCAAGTCGATTGGCATCGGCCTCCAAGGATG
GTCGCGTCTGGGTTTGGGACGTTCAACAAGGCACCGGAAAAATGTTAGCT
TCCCATCGCAAATGGGTCACGGATTTGTCTTGGAAACCTTATCATTTGGA
TCATACATGTCGTTTGTTGGTTTCTTCTTCAAAGGACGCCACTCTCAAAA
TTTGGAACGTTGCTACCATGAGTTCGATCAAGATGCTCGCTGGCCATACT
GCTGCCGTCACTACTGTTGTTTGGAGCGGCGAAGCATTTATATACTCTGC
CTCCCAGGATAGGACCATAAAGATTTGGAACCCTGACACTGGTTTGCCTA
TTTGTACCATTAACGCCCATGCACATTGGGTCAATTCCATCACTCTTTCT
ACCAGCTACATCCTCAAGTGCGGGGCATTTGCTGCCTTGGATGAGCAGAA
CGGATACACTCCGAACAAGTTGTCAAGGGAAGAGGCTTTAGAGCGTTACA
AAAAAGTAAAGATCGATTCCACCGGCGGTAAAGAACTCATGGTAAGTGGG
TCTGACGATTTCACTCTCATGCTTTGGGAGGATGTTTGGAAAGGTACAAA
ATCCATAAAGCCAATTGCTCGAATGACAGGACATCAGCAGTTGGTAAATT
GCGTGGCGTTCAGTCCAGATGGACGATACATTGCGTCGGCCAGTTTTGAC
AAAAGTGTAAGATTATGGGATGGAAAGAACGGAAGGTTTTGTTTTACGTT
CCGTGGACATGTCGCGGCAGTTTATAGAGTGGTCTGGTCGGCTGATGGCC
GATTATTGATGAGTGGTTCGAAAGATAGTACGTGTAAGGTTTGGGATATT
GGGACGAAGAAATTGAAGATGGACCTCCCTGGACATAGTGATGAGGTTTT
TACCGTAGATTGGAGCACGGATGGCAAGAGAGCTGTTTCAGCGGGAAAGG
ATAAGCTTGTGAAGATTTGGCATCACTGA

Coding sequence (CDS) from alignment at tig00000131_pilon:231462..232940+

>Gchil7033.t1 ID=Gchil7033.t1|Name=Gchil7033.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=1479bp|location=Sequence derived from alignment at tig00000131_pilon:231462..232940+ (Gracilaria chilensis NLEC103_M9 male)
ATGGAGCCCCCGCGCCAGCCCGCCAACGAGCCCGACGCTGACGCACAGTC
CGCGTCTTCCGCGCTCGTGCAGCTGTTTTCGCAGCAAGGACACGCCGTCG
GCGCTGTGCTGGATGTGCCGCTATCCTCCACGCCCAAGCAACTCACCGAA
TTGCTCAACCATCTGCTGCAGAATGACACCCCTTTGCCGTATGCTTTCTT
TCTGCGTGGCACTCGCGACCCGCTCTCACAAACTTTGCGACACACTTTGG
AACACGGTTTGCATTTGAGAGAGACCGTGGCCGAGTTGGAGTTCGTGCCG
CTGTCGCTGTTTCGAGTCAGACCGCTTTCTAGATGTAGTGCCAGCTTGCC
GGGCCATAAGGAGGCCGTCTTGGTTGCCTGTTTCTCCCCTGATTGCACCT
TGATTGCTACGGGCTCCGGCGATGCTACCGTGAGACTGTGGAATGCTGCC
GCCCAACTACCGAAGCTCTCCTTGGTTGGCCATCGCGATTGGGTGCTCGC
CTTGGCCTTCTCACCTGACTCAAGTCGATTGGCATCGGCCTCCAAGGATG
GTCGCGTCTGGGTTTGGGACGTTCAACAAGGCACCGGAAAAATGTTAGCT
TCCCATCGCAAATGGGTCACGGATTTGTCTTGGAAACCTTATCATTTGGA
TCATACATGTCGTTTGTTGGTTTCTTCTTCAAAGGACGCCACTCTCAAAA
TTTGGAACGTTGCTACCATGAGTTCGATCAAGATGCTCGCTGGCCATACT
GCTGCCGTCACTACTGTTGTTTGGAGCGGCGAAGCATTTATATACTCTGC
CTCCCAGGATAGGACCATAAAGATTTGGAACCCTGACACTGGTTTGCCTA
TTTGTACCATTAACGCCCATGCACATTGGGTCAATTCCATCACTCTTTCT
ACCAGCTACATCCTCAAGTGCGGGGCATTTGCTGCCTTGGATGAGCAGAA
CGGATACACTCCGAACAAGTTGTCAAGGGAAGAGGCTTTAGAGCGTTACA
AAAAAGTAAAGATCGATTCCACCGGCGGTAAAGAACTCATGGTAAGTGGG
TCTGACGATTTCACTCTCATGCTTTGGGAGGATGTTTGGAAAGGTACAAA
ATCCATAAAGCCAATTGCTCGAATGACAGGACATCAGCAGTTGGTAAATT
GCGTGGCGTTCAGTCCAGATGGACGATACATTGCGTCGGCCAGTTTTGAC
AAAAGTGTAAGATTATGGGATGGAAAGAACGGAAGGTTTTGTTTTACGTT
CCGTGGACATGTCGCGGCAGTTTATAGAGTGGTCTGGTCGGCTGATGGCC
GATTATTGATGAGTGGTTCGAAAGATAGTACGTGTAAGGTTTGGGATATT
GGGACGAAGAAATTGAAGATGGACCTCCCTGGACATAGTGATGAGGTTTT
TACCGTAGATTGGAGCACGGATGGCAAGAGAGCTGTTTCAGCGGGAAAGG
ATAAGCTTGTGAAGATTTGGCATCACTGA