Gchil27.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGchil27.t1
Unique NameGchil27.t1
TypemRNA
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length423
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000121_piloncontigtig00000121_pilon:89461..90729 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil27Gchil27Gracilaria chilensis NLEC103_M9 malegenetig00000121_pilon 89461..90729 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil27.t1.stop1Gchil27.t1.stop1Gracilaria chilensis NLEC103_M9 malestop_codontig00000121_pilon 89461..89463 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil27.t1.CDS1Gchil27.t1.CDS1Gracilaria chilensis NLEC103_M9 maleCDStig00000121_pilon 89461..90729 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil27.t1.exon1Gchil27.t1.exon1Gracilaria chilensis NLEC103_M9 maleexontig00000121_pilon 89461..90729 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil27.t1.start1Gchil27.t1.start1Gracilaria chilensis NLEC103_M9 malestart_codontig00000121_pilon 90727..90729 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil27.t1Gchil27.t1Gracilaria chilensis NLEC103_M9 malepolypeptidetig00000121_pilon 89461..90729 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gchil27.t1 ID=Gchil27.t1|Name=Gchil27.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=423bp
MDSILSHGGPYYYSIPVVSTSSPRQASLRNAVYHQMTRLSRSSSISRLFK
TVSVFTLIAASVFFLSSQCISCHFLHFKNRIYNFAAYGQSGVLWKVPNGY
SYYQSHRPGVIGSFSRYPNIAFRPLSTLSMAYLNRQDAAQEVEDQVIEEG
VGTRDCGAWLLCRARLIVTKEGNDVTIQVGYNISGVGGVDRPVDRGTMAR
VSAVSPEEALIWTTMLLGRVHDLLGEVNCTANAVGAAEALLVTSTVAASC
PSTHDPSCHKLITVEHCTIAAPSPSPIPLDSCEMAFDECEFTFKGETGLA
TFRTDGPADKSFTPVIVAKNPDVNLGVLNSNNIVPEFIDDSGAFPITDFG
SQRFAPTQFKPLYIWQEQGSGIGHQTFHADQGELAKGRCLRIYFTEIQLV
DPYFNLNQVPRSENKCVVFRTE*
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spliced messenger RNA

>Gchil27.t1 ID=Gchil27.t1|Name=Gchil27.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1269bp|location=Sequence derived from alignment at tig00000121_pilon:89461..90729- (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGATTCCATTCTAAGTCATGGCGGTCCCTACTACTACTCTATTCCAGT
GGTCTCGACGAGTTCCCCTCGTCAAGCTTCACTTCGAAATGCAGTTTACC
ATCAAATGACCCGTCTTTCTCGCTCATCCTCAATCTCTCGGCTGTTCAAA
ACAGTCTCCGTTTTCACTCTTATTGCCGCATCCGTATTCTTTCTTTCCAG
TCAATGCATTTCTTGTCATTTCCTTCACTTCAAGAACCGTATTTACAACT
TTGCTGCGTATGGACAATCAGGGGTTCTTTGGAAAGTTCCAAATGGATAC
TCATATTACCAATCTCATCGGCCGGGTGTCATTGGCTCGTTCAGCCGTTA
TCCCAATATCGCTTTTCGGCCTCTCTCCACTCTCTCTATGGCATACTTGA
ACAGACAAGATGCTGCTCAGGAGGTTGAAGATCAGGTCATCGAAGAAGGG
GTGGGAACTCGTGATTGCGGAGCATGGTTGCTCTGTCGTGCACGATTGAT
TGTCACGAAGGAGGGAAACGATGTTACAATCCAAGTCGGCTACAATATAT
CTGGTGTGGGCGGAGTTGATCGTCCGGTGGACAGGGGTACAATGGCGAGG
GTATCAGCTGTTAGTCCCGAGGAGGCGCTAATATGGACTACTATGCTTCT
CGGTCGGGTTCATGACCTTCTAGGTGAAGTGAACTGCACTGCCAATGCCG
TGGGCGCGGCCGAGGCGCTTTTGGTTACATCAACGGTGGCCGCTTCCTGT
CCCAGCACACATGACCCTAGCTGCCACAAGCTTATAACCGTCGAGCATTG
CACAATTGCAGCTCCAAGTCCAAGTCCAATTCCATTGGACAGCTGTGAGA
TGGCGTTCGACGAATGCGAATTTACTTTCAAGGGAGAGACGGGCTTGGCG
ACGTTCAGAACAGATGGACCGGCAGACAAGAGCTTCACGCCCGTGATAGT
TGCAAAGAACCCAGACGTGAATCTTGGTGTTTTGAACTCGAACAACATCG
TTCCAGAGTTTATTGACGATTCTGGCGCGTTTCCAATCACCGATTTTGGA
TCACAGCGTTTCGCACCAACTCAGTTCAAGCCGTTGTACATATGGCAGGA
GCAAGGCTCCGGAATTGGCCATCAGACGTTCCATGCAGATCAAGGGGAAC
TCGCTAAGGGCCGCTGCCTTCGTATTTATTTCACTGAGATTCAGTTGGTT
GACCCGTATTTCAATCTGAACCAAGTTCCGAGATCTGAAAACAAGTGTGT
AGTATTTCGCACTGAGTAG
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protein sequence of Gchil27.t1

>Gchil27.t1 ID=Gchil27.t1|Name=Gchil27.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=423bp
MDSILSHGGPYYYSIPVVSTSSPRQASLRNAVYHQMTRLSRSSSISRLFK
TVSVFTLIAASVFFLSSQCISCHFLHFKNRIYNFAAYGQSGVLWKVPNGY
SYYQSHRPGVIGSFSRYPNIAFRPLSTLSMAYLNRQDAAQEVEDQVIEEG
VGTRDCGAWLLCRARLIVTKEGNDVTIQVGYNISGVGGVDRPVDRGTMAR
VSAVSPEEALIWTTMLLGRVHDLLGEVNCTANAVGAAEALLVTSTVAASC
PSTHDPSCHKLITVEHCTIAAPSPSPIPLDSCEMAFDECEFTFKGETGLA
TFRTDGPADKSFTPVIVAKNPDVNLGVLNSNNIVPEFIDDSGAFPITDFG
SQRFAPTQFKPLYIWQEQGSGIGHQTFHADQGELAKGRCLRIYFTEIQLV
DPYFNLNQVPRSENKCVVFRTE*
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mRNA from alignment at tig00000121_pilon:89461..90729-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gchil27.t1 ID=Gchil27.t1|Name=Gchil27.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1269bp|location=Sequence derived from alignment at tig00000121_pilon:89461..90729- (Gracilaria chilensis NLEC103_M9 male)
ATGGATTCCATTCTAAGTCATGGCGGTCCCTACTACTACTCTATTCCAGT
GGTCTCGACGAGTTCCCCTCGTCAAGCTTCACTTCGAAATGCAGTTTACC
ATCAAATGACCCGTCTTTCTCGCTCATCCTCAATCTCTCGGCTGTTCAAA
ACAGTCTCCGTTTTCACTCTTATTGCCGCATCCGTATTCTTTCTTTCCAG
TCAATGCATTTCTTGTCATTTCCTTCACTTCAAGAACCGTATTTACAACT
TTGCTGCGTATGGACAATCAGGGGTTCTTTGGAAAGTTCCAAATGGATAC
TCATATTACCAATCTCATCGGCCGGGTGTCATTGGCTCGTTCAGCCGTTA
TCCCAATATCGCTTTTCGGCCTCTCTCCACTCTCTCTATGGCATACTTGA
ACAGACAAGATGCTGCTCAGGAGGTTGAAGATCAGGTCATCGAAGAAGGG
GTGGGAACTCGTGATTGCGGAGCATGGTTGCTCTGTCGTGCACGATTGAT
TGTCACGAAGGAGGGAAACGATGTTACAATCCAAGTCGGCTACAATATAT
CTGGTGTGGGCGGAGTTGATCGTCCGGTGGACAGGGGTACAATGGCGAGG
GTATCAGCTGTTAGTCCCGAGGAGGCGCTAATATGGACTACTATGCTTCT
CGGTCGGGTTCATGACCTTCTAGGTGAAGTGAACTGCACTGCCAATGCCG
TGGGCGCGGCCGAGGCGCTTTTGGTTACATCAACGGTGGCCGCTTCCTGT
CCCAGCACACATGACCCTAGCTGCCACAAGCTTATAACCGTCGAGCATTG
CACAATTGCAGCTCCAAGTCCAAGTCCAATTCCATTGGACAGCTGTGAGA
TGGCGTTCGACGAATGCGAATTTACTTTCAAGGGAGAGACGGGCTTGGCG
ACGTTCAGAACAGATGGACCGGCAGACAAGAGCTTCACGCCCGTGATAGT
TGCAAAGAACCCAGACGTGAATCTTGGTGTTTTGAACTCGAACAACATCG
TTCCAGAGTTTATTGACGATTCTGGCGCGTTTCCAATCACCGATTTTGGA
TCACAGCGTTTCGCACCAACTCAGTTCAAGCCGTTGTACATATGGCAGGA
GCAAGGCTCCGGAATTGGCCATCAGACGTTCCATGCAGATCAAGGGGAAC
TCGCTAAGGGCCGCTGCCTTCGTATTTATTTCACTGAGATTCAGTTGGTT
GACCCGTATTTCAATCTGAACCAAGTTCCGAGATCTGAAAACAAGTGTGT
AGTATTTCGCACTGAGTAG
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Coding sequence (CDS) from alignment at tig00000121_pilon:89461..90729-

>Gchil27.t1 ID=Gchil27.t1|Name=Gchil27.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=1269bp|location=Sequence derived from alignment at tig00000121_pilon:89461..90729- (Gracilaria chilensis NLEC103_M9 male)
ATGGATTCCATTCTAAGTCATGGCGGTCCCTACTACTACTCTATTCCAGT
GGTCTCGACGAGTTCCCCTCGTCAAGCTTCACTTCGAAATGCAGTTTACC
ATCAAATGACCCGTCTTTCTCGCTCATCCTCAATCTCTCGGCTGTTCAAA
ACAGTCTCCGTTTTCACTCTTATTGCCGCATCCGTATTCTTTCTTTCCAG
TCAATGCATTTCTTGTCATTTCCTTCACTTCAAGAACCGTATTTACAACT
TTGCTGCGTATGGACAATCAGGGGTTCTTTGGAAAGTTCCAAATGGATAC
TCATATTACCAATCTCATCGGCCGGGTGTCATTGGCTCGTTCAGCCGTTA
TCCCAATATCGCTTTTCGGCCTCTCTCCACTCTCTCTATGGCATACTTGA
ACAGACAAGATGCTGCTCAGGAGGTTGAAGATCAGGTCATCGAAGAAGGG
GTGGGAACTCGTGATTGCGGAGCATGGTTGCTCTGTCGTGCACGATTGAT
TGTCACGAAGGAGGGAAACGATGTTACAATCCAAGTCGGCTACAATATAT
CTGGTGTGGGCGGAGTTGATCGTCCGGTGGACAGGGGTACAATGGCGAGG
GTATCAGCTGTTAGTCCCGAGGAGGCGCTAATATGGACTACTATGCTTCT
CGGTCGGGTTCATGACCTTCTAGGTGAAGTGAACTGCACTGCCAATGCCG
TGGGCGCGGCCGAGGCGCTTTTGGTTACATCAACGGTGGCCGCTTCCTGT
CCCAGCACACATGACCCTAGCTGCCACAAGCTTATAACCGTCGAGCATTG
CACAATTGCAGCTCCAAGTCCAAGTCCAATTCCATTGGACAGCTGTGAGA
TGGCGTTCGACGAATGCGAATTTACTTTCAAGGGAGAGACGGGCTTGGCG
ACGTTCAGAACAGATGGACCGGCAGACAAGAGCTTCACGCCCGTGATAGT
TGCAAAGAACCCAGACGTGAATCTTGGTGTTTTGAACTCGAACAACATCG
TTCCAGAGTTTATTGACGATTCTGGCGCGTTTCCAATCACCGATTTTGGA
TCACAGCGTTTCGCACCAACTCAGTTCAAGCCGTTGTACATATGGCAGGA
GCAAGGCTCCGGAATTGGCCATCAGACGTTCCATGCAGATCAAGGGGAAC
TCGCTAAGGGCCGCTGCCTTCGTATTTATTTCACTGAGATTCAGTTGGTT
GACCCGTATTTCAATCTGAACCAAGTTCCGAGATCTGAAAACAAGTGTGT
AGTATTTCGCACTGAGTAG
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