Gchil3039.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gchil3039.t1
Unique Name	Gchil3039.t1
Type	mRNA
Organism	Gracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length	300

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
tig00000106_pilon	contig	tig00000106_pilon:1311881..1312780 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria chilensis NLEC103_M9 male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	529818.AMSG_05799T0
Preferred name	TBL3
PFAMs	Utp13,WD40
Max annot lvl	2759\|Eukaryota
KEGG ko	ko:K14555
KEGG Pathway	ko03008,map03008
GOs	GO:0000447,GO:0000460,GO:0000462,GO:0000466,GO:0000469,GO:0000472,GO:0000478,GO:0000479,GO:0000480,GO:0000966,GO:0000967,GO:0003674,GO:0003676,GO:0003723,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005730,GO:0006139,GO:0006364,GO:0006396,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0009987,GO:0010467,GO:0016070,GO:0016072,GO:0022613,GO:0030490,GO:0030515,GO:0030684,GO:0030686,GO:0031974,GO:0031981,GO:0032040,GO:0032991,GO:0034388,GO:0034470,GO:0034471,GO:0034641,GO:0034660,GO:0042254,GO:0042274,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0044085,GO:0044237,GO:0044238,GO:0044422,GO:0044424,GO:0044428,GO:0044446,GO:0044452,GO:0044464,GO:0046483,GO:0070013,GO:0071704,GO:0071840,GO:0090304,GO:0090305,GO:0090501,GO:0090502,GO:0097159,GO:1901360,GO:1901363,GO:1990904
Evalue	4.15e-15
EggNOG OGs	KOG0319@1\|root,KOG0319@2759\|Eukaryota
Description	Transducin beta-like protein 3
COG category	T
BRITE	ko00000,ko00001,ko03009

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gchil3039	Gchil3039	Gracilaria chilensis NLEC103_M9 male	gene	tig00000106_pilon 1311881..1312780 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil3039.t1.start1	Gchil3039.t1.start1	Gracilaria chilensis NLEC103_M9 male	start_codon	tig00000106_pilon 1311881..1311883 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil3039.t1.CDS1	Gchil3039.t1.CDS1	Gracilaria chilensis NLEC103_M9 male	CDS	tig00000106_pilon 1311881..1312780 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil3039.t1.exon1	Gchil3039.t1.exon1	Gracilaria chilensis NLEC103_M9 male	exon	tig00000106_pilon 1311881..1312780 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil3039.t1.stop1	Gchil3039.t1.stop1	Gracilaria chilensis NLEC103_M9 male	stop_codon	tig00000106_pilon 1312778..1312780 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil3039.t1	Gchil3039.t1	Gracilaria chilensis NLEC103_M9 male	polypeptide	tig00000106_pilon 1311881..1312780 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at tig00000106_pilon:1311881..1312780+
coding sequence from alignment at tig00000106_pilon:1311881..1312780+

mRNA sequence

>Gchil3039.t1 ID=Gchil3039.t1|Name=Gchil3039.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=300bp
MGEPIPVASAVCGLAFIDSDLIAAATSLGIEVIDISEHSACSIERKESAV
FAVSLADHGRFCVTGSGDGIIQVWDVRTGRRVGDSLQACGGVRKIVDVPK
SNKIVSFGWDNVVRVWQIGDKGLTSIASLVGHEGMVRAIAISPSGNCALS
ASNDKTIRVWDLSKADGTHTVLRGHEMYPAGVHFSPDGKLAMSRDPNEVR
FWDISSGECLRVVSYERNYPLSPTRLWRELWPEEPSYASEDDDVKMFWKR
CSRKIWLAADNSVLATLDSEILGGSYCQQRHILCVGLANGRLGIVQLMQ*

spliced messenger RNA

>Gchil3039.t1 ID=Gchil3039.t1|Name=Gchil3039.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=900bp|location=Sequence derived from alignment at tig00000106_pilon:1311881..1312780+ (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGGAGAGCCGATACCAGTTGCATCAGCAGTGTGTGGTTTGGCCTTTAT
CGATTCGGATCTCATAGCTGCAGCCACTTCACTTGGGATAGAAGTTATTG
ATATCTCGGAGCACAGTGCATGTTCCATTGAAAGAAAAGAGAGTGCTGTT
TTTGCCGTCTCACTGGCTGATCATGGTCGCTTTTGCGTGACAGGATCCGG
GGATGGTATCATCCAAGTATGGGACGTACGAACTGGGCGTCGAGTTGGAG
ATTCTTTGCAGGCGTGCGGAGGCGTTCGAAAAATTGTAGATGTCCCAAAA
TCGAATAAGATCGTATCGTTTGGTTGGGATAATGTTGTGCGGGTATGGCA
GATAGGCGACAAAGGACTCACATCAATTGCTTCGTTGGTAGGACATGAAG
GCATGGTGAGAGCAATTGCGATCTCTCCGAGTGGCAATTGTGCTCTCTCT
GCTTCAAACGATAAAACCATTCGTGTATGGGACTTGAGCAAAGCGGACGG
GACGCATACTGTACTGCGAGGTCATGAGATGTACCCAGCGGGTGTTCACT
TCTCCCCAGATGGCAAGCTTGCCATGTCGAGAGATCCAAATGAAGTACGA
TTCTGGGATATTAGCAGCGGGGAATGTCTTAGAGTTGTATCGTACGAGAG
AAATTATCCTCTTAGTCCCACTAGACTATGGCGCGAATTGTGGCCAGAAG
AACCATCTTATGCCAGTGAGGATGACGATGTGAAAATGTTTTGGAAACGC
TGTTCAAGAAAAATTTGGCTTGCTGCAGACAATAGTGTACTTGCTACTTT
AGATAGCGAAATCCTTGGGGGGTCCTATTGTCAACAGAGACACATTCTGT
GTGTGGGTCTCGCGAATGGACGGCTTGGAATTGTTCAACTCATGCAGTGA

protein sequence of Gchil3039.t1

>Gchil3039.t1 ID=Gchil3039.t1|Name=Gchil3039.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=300bp
MGEPIPVASAVCGLAFIDSDLIAAATSLGIEVIDISEHSACSIERKESAV
FAVSLADHGRFCVTGSGDGIIQVWDVRTGRRVGDSLQACGGVRKIVDVPK
SNKIVSFGWDNVVRVWQIGDKGLTSIASLVGHEGMVRAIAISPSGNCALS
ASNDKTIRVWDLSKADGTHTVLRGHEMYPAGVHFSPDGKLAMSRDPNEVR
FWDISSGECLRVVSYERNYPLSPTRLWRELWPEEPSYASEDDDVKMFWKR
CSRKIWLAADNSVLATLDSEILGGSYCQQRHILCVGLANGRLGIVQLMQ*

mRNA from alignment at tig00000106_pilon:1311881..1312780+

Legend: start_codonpolypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gchil3039.t1 ID=Gchil3039.t1|Name=Gchil3039.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=900bp|location=Sequence derived from alignment at tig00000106_pilon:1311881..1312780+ (Gracilaria chilensis NLEC103_M9 male)
ATGGGAGAGCCGATACCAGTTGCATCAGCAGTGTGTGGTTTGGCCTTTAT
CGATTCGGATCTCATAGCTGCAGCCACTTCACTTGGGATAGAAGTTATTG
ATATCTCGGAGCACAGTGCATGTTCCATTGAAAGAAAAGAGAGTGCTGTT
TTTGCCGTCTCACTGGCTGATCATGGTCGCTTTTGCGTGACAGGATCCGG
GGATGGTATCATCCAAGTATGGGACGTACGAACTGGGCGTCGAGTTGGAG
ATTCTTTGCAGGCGTGCGGAGGCGTTCGAAAAATTGTAGATGTCCCAAAA
TCGAATAAGATCGTATCGTTTGGTTGGGATAATGTTGTGCGGGTATGGCA
GATAGGCGACAAAGGACTCACATCAATTGCTTCGTTGGTAGGACATGAAG
GCATGGTGAGAGCAATTGCGATCTCTCCGAGTGGCAATTGTGCTCTCTCT
GCTTCAAACGATAAAACCATTCGTGTATGGGACTTGAGCAAAGCGGACGG
GACGCATACTGTACTGCGAGGTCATGAGATGTACCCAGCGGGTGTTCACT
TCTCCCCAGATGGCAAGCTTGCCATGTCGAGAGATCCAAATGAAGTACGA
TTCTGGGATATTAGCAGCGGGGAATGTCTTAGAGTTGTATCGTACGAGAG
AAATTATCCTCTTAGTCCCACTAGACTATGGCGCGAATTGTGGCCAGAAG
AACCATCTTATGCCAGTGAGGATGACGATGTGAAAATGTTTTGGAAACGC
TGTTCAAGAAAAATTTGGCTTGCTGCAGACAATAGTGTACTTGCTACTTT
AGATAGCGAAATCCTTGGGGGGTCCTATTGTCAACAGAGACACATTCTGT
GTGTGGGTCTCGCGAATGGACGGCTTGGAATTGTTCAACTCATGCAGTGA

Coding sequence (CDS) from alignment at tig00000106_pilon:1311881..1312780+

>Gchil3039.t1 ID=Gchil3039.t1|Name=Gchil3039.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=900bp|location=Sequence derived from alignment at tig00000106_pilon:1311881..1312780+ (Gracilaria chilensis NLEC103_M9 male)
ATGGGAGAGCCGATACCAGTTGCATCAGCAGTGTGTGGTTTGGCCTTTAT
CGATTCGGATCTCATAGCTGCAGCCACTTCACTTGGGATAGAAGTTATTG
ATATCTCGGAGCACAGTGCATGTTCCATTGAAAGAAAAGAGAGTGCTGTT
TTTGCCGTCTCACTGGCTGATCATGGTCGCTTTTGCGTGACAGGATCCGG
GGATGGTATCATCCAAGTATGGGACGTACGAACTGGGCGTCGAGTTGGAG
ATTCTTTGCAGGCGTGCGGAGGCGTTCGAAAAATTGTAGATGTCCCAAAA
TCGAATAAGATCGTATCGTTTGGTTGGGATAATGTTGTGCGGGTATGGCA
GATAGGCGACAAAGGACTCACATCAATTGCTTCGTTGGTAGGACATGAAG
GCATGGTGAGAGCAATTGCGATCTCTCCGAGTGGCAATTGTGCTCTCTCT
GCTTCAAACGATAAAACCATTCGTGTATGGGACTTGAGCAAAGCGGACGG
GACGCATACTGTACTGCGAGGTCATGAGATGTACCCAGCGGGTGTTCACT
TCTCCCCAGATGGCAAGCTTGCCATGTCGAGAGATCCAAATGAAGTACGA
TTCTGGGATATTAGCAGCGGGGAATGTCTTAGAGTTGTATCGTACGAGAG
AAATTATCCTCTTAGTCCCACTAGACTATGGCGCGAATTGTGGCCAGAAG
AACCATCTTATGCCAGTGAGGATGACGATGTGAAAATGTTTTGGAAACGC
TGTTCAAGAAAAATTTGGCTTGCTGCAGACAATAGTGTACTTGCTACTTT
AGATAGCGAAATCCTTGGGGGGTCCTATTGTCAACAGAGACACATTCTGT
GTGTGGGTCTCGCGAATGGACGGCTTGGAATTGTTCAACTCATGCAGTGA