Gchil3029.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGchil3029.t1
Unique NameGchil3029.t1
TypemRNA
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length422
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000106_piloncontigtig00000106_pilon:1199065..1200330 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog130081.XP_005708026.1
Preferred nameTXLNB
PFAMsTaxilin
Max annot lvl2759|Eukaryota
KEGG rclassRC00141
KEGG koko:K06013,ko:K19535
KEGG ReactionR09845
KEGG Pathwayko00900,ko01130,map00900,map01130
GOsGO:0001775,GO:0002376,GO:0003674,GO:0005102,GO:0005125,GO:0005488,GO:0005515,GO:0005575,GO:0005576,GO:0005615,GO:0005622,GO:0005623,GO:0005634,GO:0005635,GO:0005737,GO:0005829,GO:0007154,GO:0007165,GO:0007166,GO:0007275,GO:0007399,GO:0008150,GO:0008283,GO:0009966,GO:0009987,GO:0010033,GO:0010469,GO:0010564,GO:0010646,GO:0010720,GO:0010975,GO:0010976,GO:0012505,GO:0016020,GO:0019221,GO:0022008,GO:0023051,GO:0023052,GO:0030016,GO:0030017,GO:0030154,GO:0030278,GO:0030372,GO:0030500,GO:0030545,GO:0031090,GO:0031344,GO:0031346,GO:0031965,GO:0031967,GO:0031975,GO:0032501,GO:0032502,GO:0034097,GO:0042113,GO:0042221,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043292,GO:0044421,GO:0044422,GO:0044424,GO:0044428,GO:0044444,GO:0044446,GO:0044449,GO:0044464,GO:0045321,GO:0045595,GO:0045597,GO:0045664,GO:0045666,GO:0046649,GO:0046982,GO:0046983,GO:0048018,GO:0048518,GO:0048522,GO:0048583,GO:0048699,GO:0048731,GO:0048856,GO:0048869,GO:0050767,GO:0050769,GO:0050789,GO:0050793,GO:0050794,GO:0050896,GO:0051094,GO:0051128,GO:0051130,GO:0051239,GO:0051240,GO:0051716,GO:0051726,GO:0051960,GO:0051962,GO:0060284,GO:0065007,GO:0065009,GO:0070167,GO:0070851,GO:0070887,GO:0071310,GO:0071345,GO:0098772,GO:0099080,GO:0099081,GO:0099512,GO:0120035,GO:2000026
Evalue8.7e-13
EggNOG OGsKOG1850@1|root,KOG1850@2759|Eukaryota
EC3.4.24.84
Descriptionsyntaxin binding
COG categoryS
BRITEko00000,ko00001,ko01000,ko01002,ko03036,ko04147
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil3029Gchil3029Gracilaria chilensis NLEC103_M9 malegenetig00000106_pilon 1199065..1200330 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil3029.t1.stop1Gchil3029.t1.stop1Gracilaria chilensis NLEC103_M9 malestop_codontig00000106_pilon 1199065..1199067 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil3029.t1.CDS1Gchil3029.t1.CDS1Gracilaria chilensis NLEC103_M9 maleCDStig00000106_pilon 1199065..1200330 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil3029.t1.exon1Gchil3029.t1.exon1Gracilaria chilensis NLEC103_M9 maleexontig00000106_pilon 1199065..1200330 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil3029.t1.start1Gchil3029.t1.start1Gracilaria chilensis NLEC103_M9 malestart_codontig00000106_pilon 1200328..1200330 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil3029.t1Gchil3029.t1Gracilaria chilensis NLEC103_M9 malepolypeptidetig00000106_pilon 1199065..1200330 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gchil3029.t1 ID=Gchil3029.t1|Name=Gchil3029.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=422bp
MPRRARRPNNAAAESNSSRPPPNEHAISARIQATFKKIIVALQDQRDLRC
DLASTRARALVLDSEFVVLHTEFDRSVAARDKLDALSRELMRRNKLIDDE
AEKHILDEQKMTEDIVRRFNAAMTDINRKLHSQCRSREQRDRYVSVLRNK
LRDLRERYDMREQHFKQQMHRKQLEQQLAIAKHRELVQKHSEIINQLTEL
QSESQALEAHQQQQQALLDQCQATVQESQLYLQSNELLHHSQAAHIEHMH
VEAKQLQSSNATARNANNSTNVHIKAMESECKRLEASITQTRDVERKERT
KIEALEKLCKQVTKERSELQSEFLVMHDAWANLKEEIEVLKDKIGEDTKG
SRIFETLQSMMSREQDVAGRITFRNHKDIDDTSNDELSLLHLVSGSKLDE
QMPLTAPVSKPETSNGIRPPG*
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spliced messenger RNA

>Gchil3029.t1 ID=Gchil3029.t1|Name=Gchil3029.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1266bp|location=Sequence derived from alignment at tig00000106_pilon:1199065..1200330- (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCCGAGAAGAGCCAGACGCCCCAACAACGCCGCCGCAGAGTCAAACTC
CAGTCGACCCCCACCAAATGAGCATGCCATCTCCGCACGTATCCAGGCTA
CCTTCAAGAAGATTATCGTCGCCTTGCAGGATCAACGCGACCTTCGCTGT
GACCTTGCCAGCACCCGTGCGCGAGCACTCGTGCTCGACTCCGAATTCGT
CGTGTTGCACACCGAATTTGACCGCTCCGTCGCCGCCAGGGACAAGCTGG
ACGCTCTGAGTCGTGAACTCATGCGCCGCAACAAGCTCATCGACGACGAG
GCCGAGAAGCACATCTTAGACGAACAGAAGATGACCGAGGACATTGTTCG
ACGTTTTAATGCTGCTATGACTGACATTAATCGCAAACTCCACTCGCAGT
GTCGATCACGGGAACAACGTGATCGCTATGTTTCCGTATTGCGAAACAAA
CTTCGAGACCTTCGAGAACGCTATGACATGCGTGAACAGCATTTCAAGCA
ACAGATGCATCGAAAGCAACTGGAACAGCAGCTTGCAATAGCCAAACACC
GAGAACTTGTACAAAAGCATTCTGAAATCATCAACCAACTCACCGAATTA
CAAAGCGAGTCGCAAGCGCTTGAAGCGCATCAGCAACAACAACAGGCATT
GCTTGATCAGTGCCAAGCTACCGTGCAAGAAAGCCAACTTTATCTACAGT
CCAATGAGCTGCTGCATCATTCCCAAGCAGCTCACATTGAACACATGCAC
GTCGAAGCAAAGCAACTGCAAAGCTCTAATGCTACCGCTAGAAATGCCAA
CAATTCTACCAACGTTCACATAAAGGCAATGGAATCCGAGTGTAAGAGAC
TAGAAGCTTCCATCACACAAACGCGAGATGTAGAACGGAAAGAACGAACC
AAAATCGAAGCACTCGAAAAACTGTGCAAACAAGTAACGAAAGAACGTTC
CGAGTTGCAAAGCGAATTTCTTGTCATGCACGATGCTTGGGCTAATTTGA
AGGAAGAGATTGAAGTGTTGAAGGATAAAATTGGTGAAGATACCAAGGGC
AGTCGCATCTTTGAAACGCTGCAAAGTATGATGAGTCGGGAGCAGGACGT
TGCCGGTAGAATCACCTTCCGGAATCACAAGGACATTGATGATACCAGCA
ACGACGAGCTTAGTCTCTTGCATTTGGTGTCGGGAAGCAAATTGGATGAG
CAGATGCCTTTAACTGCCCCTGTCTCGAAGCCAGAAACGTCCAACGGCAT
TCGTCCACCCGGATGA
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protein sequence of Gchil3029.t1

>Gchil3029.t1 ID=Gchil3029.t1|Name=Gchil3029.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=422bp
MPRRARRPNNAAAESNSSRPPPNEHAISARIQATFKKIIVALQDQRDLRC
DLASTRARALVLDSEFVVLHTEFDRSVAARDKLDALSRELMRRNKLIDDE
AEKHILDEQKMTEDIVRRFNAAMTDINRKLHSQCRSREQRDRYVSVLRNK
LRDLRERYDMREQHFKQQMHRKQLEQQLAIAKHRELVQKHSEIINQLTEL
QSESQALEAHQQQQQALLDQCQATVQESQLYLQSNELLHHSQAAHIEHMH
VEAKQLQSSNATARNANNSTNVHIKAMESECKRLEASITQTRDVERKERT
KIEALEKLCKQVTKERSELQSEFLVMHDAWANLKEEIEVLKDKIGEDTKG
SRIFETLQSMMSREQDVAGRITFRNHKDIDDTSNDELSLLHLVSGSKLDE
QMPLTAPVSKPETSNGIRPPG*
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mRNA from alignment at tig00000106_pilon:1199065..1200330-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gchil3029.t1 ID=Gchil3029.t1|Name=Gchil3029.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1266bp|location=Sequence derived from alignment at tig00000106_pilon:1199065..1200330- (Gracilaria chilensis NLEC103_M9 male)
ATGCCGAGAAGAGCCAGACGCCCCAACAACGCCGCCGCAGAGTCAAACTC
CAGTCGACCCCCACCAAATGAGCATGCCATCTCCGCACGTATCCAGGCTA
CCTTCAAGAAGATTATCGTCGCCTTGCAGGATCAACGCGACCTTCGCTGT
GACCTTGCCAGCACCCGTGCGCGAGCACTCGTGCTCGACTCCGAATTCGT
CGTGTTGCACACCGAATTTGACCGCTCCGTCGCCGCCAGGGACAAGCTGG
ACGCTCTGAGTCGTGAACTCATGCGCCGCAACAAGCTCATCGACGACGAG
GCCGAGAAGCACATCTTAGACGAACAGAAGATGACCGAGGACATTGTTCG
ACGTTTTAATGCTGCTATGACTGACATTAATCGCAAACTCCACTCGCAGT
GTCGATCACGGGAACAACGTGATCGCTATGTTTCCGTATTGCGAAACAAA
CTTCGAGACCTTCGAGAACGCTATGACATGCGTGAACAGCATTTCAAGCA
ACAGATGCATCGAAAGCAACTGGAACAGCAGCTTGCAATAGCCAAACACC
GAGAACTTGTACAAAAGCATTCTGAAATCATCAACCAACTCACCGAATTA
CAAAGCGAGTCGCAAGCGCTTGAAGCGCATCAGCAACAACAACAGGCATT
GCTTGATCAGTGCCAAGCTACCGTGCAAGAAAGCCAACTTTATCTACAGT
CCAATGAGCTGCTGCATCATTCCCAAGCAGCTCACATTGAACACATGCAC
GTCGAAGCAAAGCAACTGCAAAGCTCTAATGCTACCGCTAGAAATGCCAA
CAATTCTACCAACGTTCACATAAAGGCAATGGAATCCGAGTGTAAGAGAC
TAGAAGCTTCCATCACACAAACGCGAGATGTAGAACGGAAAGAACGAACC
AAAATCGAAGCACTCGAAAAACTGTGCAAACAAGTAACGAAAGAACGTTC
CGAGTTGCAAAGCGAATTTCTTGTCATGCACGATGCTTGGGCTAATTTGA
AGGAAGAGATTGAAGTGTTGAAGGATAAAATTGGTGAAGATACCAAGGGC
AGTCGCATCTTTGAAACGCTGCAAAGTATGATGAGTCGGGAGCAGGACGT
TGCCGGTAGAATCACCTTCCGGAATCACAAGGACATTGATGATACCAGCA
ACGACGAGCTTAGTCTCTTGCATTTGGTGTCGGGAAGCAAATTGGATGAG
CAGATGCCTTTAACTGCCCCTGTCTCGAAGCCAGAAACGTCCAACGGCAT
TCGTCCACCCGGATGA
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Coding sequence (CDS) from alignment at tig00000106_pilon:1199065..1200330-

>Gchil3029.t1 ID=Gchil3029.t1|Name=Gchil3029.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=1266bp|location=Sequence derived from alignment at tig00000106_pilon:1199065..1200330- (Gracilaria chilensis NLEC103_M9 male)
ATGCCGAGAAGAGCCAGACGCCCCAACAACGCCGCCGCAGAGTCAAACTC
CAGTCGACCCCCACCAAATGAGCATGCCATCTCCGCACGTATCCAGGCTA
CCTTCAAGAAGATTATCGTCGCCTTGCAGGATCAACGCGACCTTCGCTGT
GACCTTGCCAGCACCCGTGCGCGAGCACTCGTGCTCGACTCCGAATTCGT
CGTGTTGCACACCGAATTTGACCGCTCCGTCGCCGCCAGGGACAAGCTGG
ACGCTCTGAGTCGTGAACTCATGCGCCGCAACAAGCTCATCGACGACGAG
GCCGAGAAGCACATCTTAGACGAACAGAAGATGACCGAGGACATTGTTCG
ACGTTTTAATGCTGCTATGACTGACATTAATCGCAAACTCCACTCGCAGT
GTCGATCACGGGAACAACGTGATCGCTATGTTTCCGTATTGCGAAACAAA
CTTCGAGACCTTCGAGAACGCTATGACATGCGTGAACAGCATTTCAAGCA
ACAGATGCATCGAAAGCAACTGGAACAGCAGCTTGCAATAGCCAAACACC
GAGAACTTGTACAAAAGCATTCTGAAATCATCAACCAACTCACCGAATTA
CAAAGCGAGTCGCAAGCGCTTGAAGCGCATCAGCAACAACAACAGGCATT
GCTTGATCAGTGCCAAGCTACCGTGCAAGAAAGCCAACTTTATCTACAGT
CCAATGAGCTGCTGCATCATTCCCAAGCAGCTCACATTGAACACATGCAC
GTCGAAGCAAAGCAACTGCAAAGCTCTAATGCTACCGCTAGAAATGCCAA
CAATTCTACCAACGTTCACATAAAGGCAATGGAATCCGAGTGTAAGAGAC
TAGAAGCTTCCATCACACAAACGCGAGATGTAGAACGGAAAGAACGAACC
AAAATCGAAGCACTCGAAAAACTGTGCAAACAAGTAACGAAAGAACGTTC
CGAGTTGCAAAGCGAATTTCTTGTCATGCACGATGCTTGGGCTAATTTGA
AGGAAGAGATTGAAGTGTTGAAGGATAAAATTGGTGAAGATACCAAGGGC
AGTCGCATCTTTGAAACGCTGCAAAGTATGATGAGTCGGGAGCAGGACGT
TGCCGGTAGAATCACCTTCCGGAATCACAAGGACATTGATGATACCAGCA
ACGACGAGCTTAGTCTCTTGCATTTGGTGTCGGGAAGCAAATTGGATGAG
CAGATGCCTTTAACTGCCCCTGTCTCGAAGCCAGAAACGTCCAACGGCAT
TCGTCCACCCGGATGA
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