Gchil3034.t2 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGchil3034.t2
Unique NameGchil3034.t2
TypemRNA
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length517
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000106_piloncontigtig00000106_pilon:1226444..1228241 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog130081.XP_005704070.1
Preferred nameATP6V1H
PFAMsV-ATPase_H_C,V-ATPase_H_N
Max annot lvl2759|Eukaryota
KEGG koko:K02144
KEGG TC3.A.2.2
KEGG Pathwayko00190,ko01100,ko04142,ko04145,ko04150,ko04721,ko05110,ko05120,ko05152,ko05323,map00190,map01100,map04142,map04145,map04150,map04721,map05110,map05120,map05152,map05323
KEGG ModuleM00160
GOsGO:0000041,GO:0000221,GO:0000322,GO:0000323,GO:0000324,GO:0000329,GO:0003674,GO:0003824,GO:0005215,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005764,GO:0005765,GO:0005773,GO:0005774,GO:0005829,GO:0005886,GO:0006403,GO:0006810,GO:0006811,GO:0006812,GO:0006826,GO:0006873,GO:0006885,GO:0006897,GO:0007035,GO:0007154,GO:0007165,GO:0007166,GO:0007167,GO:0007169,GO:0007275,GO:0007568,GO:0008104,GO:0008150,GO:0008286,GO:0008324,GO:0008340,GO:0009719,GO:0009725,GO:0009894,GO:0009987,GO:0010033,GO:0010243,GO:0010259,GO:0010506,GO:0015031,GO:0015075,GO:0015077,GO:0015078,GO:0015318,GO:0015399,GO:0015405,GO:0015672,GO:0015682,GO:0015833,GO:0015931,GO:0015988,GO:0015991,GO:0016020,GO:0016021,GO:0016032,GO:0016192,GO:0016241,GO:0016462,GO:0016469,GO:0016471,GO:0016787,GO:0016817,GO:0016818,GO:0016887,GO:0017111,GO:0019222,GO:0019725,GO:0019829,GO:0022804,GO:0022853,GO:0022857,GO:0022890,GO:0023052,GO:0030001,GO:0030003,GO:0030004,GO:0030234,GO:0030641,GO:0031090,GO:0031224,GO:0031323,GO:0031329,GO:0032501,GO:0032502,GO:0032868,GO:0032869,GO:0032870,GO:0032991,GO:0033036,GO:0033176,GO:0033178,GO:0033180,GO:0033181,GO:0033227,GO:0033572,GO:0034220,GO:0036442,GO:0042221,GO:0042592,GO:0042623,GO:0042625,GO:0042626,GO:0042886,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043434,GO:0043492,GO:0044403,GO:0044419,GO:0044422,GO:0044424,GO:0044425,GO:0044437,GO:0044444,GO:0044446,GO:0044459,GO:0044464,GO:0044769,GO:0045184,GO:0045851,GO:0046961,GO:0048856,GO:0048878,GO:0050657,GO:0050658,GO:0050690,GO:0050789,GO:0050790,GO:0050794,GO:0050801,GO:0050896,GO:0051179,GO:0051234,GO:0051236,GO:0051452,GO:0051453,GO:0051704,GO:0051716,GO:0055067,GO:0055080,GO:0055082,GO:0055085,GO:0065007,GO:0065008,GO:0065009,GO:0070887,GO:0071310,GO:0071375,GO:0071417,GO:0071495,GO:0071702,GO:0071705,GO:0071944,GO:0072512,GO:0090662,GO:0098588,GO:0098655,GO:0098657,GO:0098660,GO:0098662,GO:0098771,GO:0098772,GO:0098796,GO:0098797,GO:0098805,GO:0098852,GO:0099131,GO:0099132,GO:1901652,GO:1901653,GO:1901698,GO:1901699,GO:1901700,GO:1901701,GO:1902600
Evalue2.32e-50
EggNOG OGsCOG5231@1|root,KOG2759@2759|Eukaryota
Descriptionproton-transporting ATPase activity, rotational mechanism
COG categoryC
BRITEko00000,ko00001,ko00002
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil3034Gchil3034Gracilaria chilensis NLEC103_M9 malegenetig00000106_pilon 1226444..1228241 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil3034.t2Gchil3034.t2Gracilaria chilensis NLEC103_M9 malepolypeptidetig00000106_pilon 1226444..1228241 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil3034.t2.start1Gchil3034.t2.start1Gracilaria chilensis NLEC103_M9 malestart_codontig00000106_pilon 1226444..1226446 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil3034.t2.CDS1Gchil3034.t2.CDS1Gracilaria chilensis NLEC103_M9 maleCDStig00000106_pilon 1226444..1226485 +
Gchil3034.t2.CDS2Gchil3034.t2.CDS2Gracilaria chilensis NLEC103_M9 maleCDStig00000106_pilon 1226627..1226746 +
Gchil3034.t2.CDS3Gchil3034.t2.CDS3Gracilaria chilensis NLEC103_M9 maleCDStig00000106_pilon 1226853..1228241 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil3034.t2.exon1Gchil3034.t2.exon1Gracilaria chilensis NLEC103_M9 maleexontig00000106_pilon 1226444..1226485 +
Gchil3034.t2.exon2Gchil3034.t2.exon2Gracilaria chilensis NLEC103_M9 maleexontig00000106_pilon 1226627..1226746 +
Gchil3034.t2.exon3Gchil3034.t2.exon3Gracilaria chilensis NLEC103_M9 maleexontig00000106_pilon 1226853..1228241 +


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil3034.t2.intron1Gchil3034.t2.intron1Gracilaria chilensis NLEC103_M9 maleintrontig00000106_pilon 1226486..1226626 +
Gchil3034.t2.intron2Gchil3034.t2.intron2Gracilaria chilensis NLEC103_M9 maleintrontig00000106_pilon 1226747..1226852 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil3034.t2.stop1Gchil3034.t2.stop1Gracilaria chilensis NLEC103_M9 malestop_codontig00000106_pilon 1228239..1228241 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gchil3034.t2 ID=Gchil3034.t2|Name=Gchil3034.t2|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=517bp
MAPATRPLVSSPWTGTALSYEDATQLDKLEYALGISPSSVNRYLAQDGAV
HSISSALSEASKVITTVDGHIRAGKLLSTVSDYINSKSRASAFGEFVTGL
GDTLFHNFISALENDKEVTSWYLAGLGPILGSRSLAAHAKAGGKQADIEQ
QKTLFVSATAELLAAITTESLLANNEDDDQPDQHTTSAALPLASQSRMDS
MSYSSIASGGGYIPTVADIGAPVNQGYASAGDEQLGRILCGVSKFLSTDE
NRSLICSVKPQCGRLPSILAGLLDKDVGIPVQVAYQAIFCLWLLSFVSQQ
DSNAASMDAISDALEEAAVPRRLTHVLRDILAEKVVRVSLATLRNMLNMS
STLRKEMVGAGLVGAIQSLCFRRWNDEDIRDDLGVVAEALQSELASMSNF
DVYRGEVLSGALKWTPAHTDDTFWEANAEKLERNKQEVLRCLVRLLHQSN
EETVLAVACNDLAQFIKHNPRGRIIAQSLGVKGRLMELMVTGEGDVRRYA
LNCVQVLLIRWNRQDL*
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spliced messenger RNA

>Gchil3034.t2 ID=Gchil3034.t2|Name=Gchil3034.t2|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1551bp|location=Sequence derived from alignment at tig00000106_pilon:1226444..1228241+ (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGCTCCCGCTACTCGGCCGCTTGTGTCCTCGCCGTGGACGGGTACCGC
TTTATCGTACGAGGACGCCACCCAGCTCGACAAATTGGAATATGCCCTCG
GCATCAGTCCGTCCTCCGTCAACAGGTATCTCGCCCAGGACGGTGCTGTC
CATTCCATATCGAGTGCTCTATCGGAGGCTTCAAAAGTCATCACCACCGT
CGATGGCCACATCCGTGCCGGAAAACTTCTCTCCACCGTTTCAGACTACA
TAAACTCCAAATCGCGCGCCTCAGCCTTCGGCGAATTCGTCACGGGCTTG
GGCGACACTCTCTTCCACAACTTCATCTCCGCTCTCGAAAACGACAAGGA
GGTCACCTCTTGGTATCTCGCTGGTCTGGGCCCCATTCTTGGCTCACGTT
CCCTTGCTGCGCACGCTAAGGCCGGAGGAAAGCAGGCCGACATTGAACAG
CAAAAGACTTTGTTTGTGTCTGCTACTGCCGAGCTTCTTGCTGCCATCAC
CACAGAAAGTCTGTTGGCCAACAATGAGGACGATGACCAACCTGATCAGC
ACACAACATCCGCCGCGCTCCCTCTCGCGTCCCAATCCAGAATGGATTCC
ATGAGCTATTCATCCATCGCTTCTGGCGGAGGCTACATCCCAACCGTGGC
TGACATCGGGGCCCCGGTCAACCAGGGCTACGCCAGTGCTGGAGACGAGC
AACTCGGTCGTATTCTCTGTGGCGTATCTAAGTTTCTTTCCACTGATGAG
AATCGATCCCTCATCTGCAGTGTGAAGCCGCAATGTGGTCGTCTGCCGAG
CATTCTGGCTGGTCTCCTTGACAAGGACGTGGGCATACCCGTTCAGGTGG
CTTATCAGGCCATTTTCTGCTTGTGGCTTCTGTCGTTTGTCAGCCAGCAG
GATTCCAACGCCGCCTCCATGGATGCCATCTCCGATGCTCTCGAAGAAGC
TGCCGTGCCCCGCCGTCTCACCCATGTTCTCCGCGATATTTTGGCAGAGA
AAGTTGTTCGTGTTTCACTGGCAACCTTGCGAAACATGCTCAACATGTCG
AGCACCCTCAGGAAGGAAATGGTTGGTGCTGGCCTCGTAGGCGCCATCCA
GTCGTTGTGCTTCAGGAGGTGGAACGACGAAGACATTCGCGATGACCTCG
GGGTTGTGGCGGAAGCCCTTCAATCAGAGTTGGCGTCCATGAGCAACTTT
GATGTCTACAGAGGTGAAGTTTTGTCTGGTGCTCTCAAATGGACACCTGC
CCACACGGATGACACTTTCTGGGAAGCAAACGCAGAGAAGCTCGAGCGCA
ACAAGCAGGAAGTTCTACGCTGCTTGGTACGCCTTCTTCATCAATCAAAC
GAAGAGACTGTTTTGGCTGTGGCCTGCAATGACCTCGCTCAGTTCATCAA
GCACAACCCGCGTGGACGAATCATCGCCCAATCCCTCGGCGTCAAGGGAA
GGCTCATGGAACTGATGGTCACTGGAGAAGGTGACGTTCGTCGCTACGCT
CTAAATTGTGTACAAGTTTTGTTGATCCGATGGAATCGCCAGGATCTGTA
A
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protein sequence of Gchil3034.t2

>Gchil3034.t2 ID=Gchil3034.t2|Name=Gchil3034.t2|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=517bp
MAPATRPLVSSPWTGTALSYEDATQLDKLEYALGISPSSVNRYLAQDGAV
HSISSALSEASKVITTVDGHIRAGKLLSTVSDYINSKSRASAFGEFVTGL
GDTLFHNFISALENDKEVTSWYLAGLGPILGSRSLAAHAKAGGKQADIEQ
QKTLFVSATAELLAAITTESLLANNEDDDQPDQHTTSAALPLASQSRMDS
MSYSSIASGGGYIPTVADIGAPVNQGYASAGDEQLGRILCGVSKFLSTDE
NRSLICSVKPQCGRLPSILAGLLDKDVGIPVQVAYQAIFCLWLLSFVSQQ
DSNAASMDAISDALEEAAVPRRLTHVLRDILAEKVVRVSLATLRNMLNMS
STLRKEMVGAGLVGAIQSLCFRRWNDEDIRDDLGVVAEALQSELASMSNF
DVYRGEVLSGALKWTPAHTDDTFWEANAEKLERNKQEVLRCLVRLLHQSN
EETVLAVACNDLAQFIKHNPRGRIIAQSLGVKGRLMELMVTGEGDVRRYA
LNCVQVLLIRWNRQDL*
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mRNA from alignment at tig00000106_pilon:1226444..1228241+

Legend: polypeptidestart_codonCDSexonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gchil3034.t2 ID=Gchil3034.t2|Name=Gchil3034.t2|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1798bp|location=Sequence derived from alignment at tig00000106_pilon:1226444..1228241+ (Gracilaria chilensis NLEC103_M9 male)
ATGGCTCCCGCTACTCGGCCGCTTGTGTCCTCGCCGTGGACGGTGCGTTT
TGCGCTTGCATCTCAAGTGTTCTCTTCTCCCCTCCCATTACGCTCTGTGC
CTCTGACATTGACCATTTGTTTTTGTTTTGTGTTTCGTTGTGTTCTTAAA
CTTGACGTCGCTTCAATAAAGGTTGTTTTGCAGGGTACCGCTTTATCGTA
CGAGGACGCCACCCAGCTCGACAAATTGGAATATGCCCTCGGCATCAGTC
CGTCCTCCGTCAACAGGTATCTCGCCCAGGACGGTGCTGTCCATTCCATA
TCGGTAAGGAATCAATCACCCCACTCCTGTCCTACGCCTTTTCCGGCTCT
GCATCGTTGTCGACCCCCATTCTAACCTAAACACACCCGTTTGAGCGTCG
TCCGTGCAGAGTGCTCTATCGGAGGCTTCAAAAGTCATCACCACCGTCGA
TGGCCACATCCGTGCCGGAAAACTTCTCTCCACCGTTTCAGACTACATAA
ACTCCAAATCGCGCGCCTCAGCCTTCGGCGAATTCGTCACGGGCTTGGGC
GACACTCTCTTCCACAACTTCATCTCCGCTCTCGAAAACGACAAGGAGGT
CACCTCTTGGTATCTCGCTGGTCTGGGCCCCATTCTTGGCTCACGTTCCC
TTGCTGCGCACGCTAAGGCCGGAGGAAAGCAGGCCGACATTGAACAGCAA
AAGACTTTGTTTGTGTCTGCTACTGCCGAGCTTCTTGCTGCCATCACCAC
AGAAAGTCTGTTGGCCAACAATGAGGACGATGACCAACCTGATCAGCACA
CAACATCCGCCGCGCTCCCTCTCGCGTCCCAATCCAGAATGGATTCCATG
AGCTATTCATCCATCGCTTCTGGCGGAGGCTACATCCCAACCGTGGCTGA
CATCGGGGCCCCGGTCAACCAGGGCTACGCCAGTGCTGGAGACGAGCAAC
TCGGTCGTATTCTCTGTGGCGTATCTAAGTTTCTTTCCACTGATGAGAAT
CGATCCCTCATCTGCAGTGTGAAGCCGCAATGTGGTCGTCTGCCGAGCAT
TCTGGCTGGTCTCCTTGACAAGGACGTGGGCATACCCGTTCAGGTGGCTT
ATCAGGCCATTTTCTGCTTGTGGCTTCTGTCGTTTGTCAGCCAGCAGGAT
TCCAACGCCGCCTCCATGGATGCCATCTCCGATGCTCTCGAAGAAGCTGC
CGTGCCCCGCCGTCTCACCCATGTTCTCCGCGATATTTTGGCAGAGAAAG
TTGTTCGTGTTTCACTGGCAACCTTGCGAAACATGCTCAACATGTCGAGC
ACCCTCAGGAAGGAAATGGTTGGTGCTGGCCTCGTAGGCGCCATCCAGTC
GTTGTGCTTCAGGAGGTGGAACGACGAAGACATTCGCGATGACCTCGGGG
TTGTGGCGGAAGCCCTTCAATCAGAGTTGGCGTCCATGAGCAACTTTGAT
GTCTACAGAGGTGAAGTTTTGTCTGGTGCTCTCAAATGGACACCTGCCCA
CACGGATGACACTTTCTGGGAAGCAAACGCAGAGAAGCTCGAGCGCAACA
AGCAGGAAGTTCTACGCTGCTTGGTACGCCTTCTTCATCAATCAAACGAA
GAGACTGTTTTGGCTGTGGCCTGCAATGACCTCGCTCAGTTCATCAAGCA
CAACCCGCGTGGACGAATCATCGCCCAATCCCTCGGCGTCAAGGGAAGGC
TCATGGAACTGATGGTCACTGGAGAAGGTGACGTTCGTCGCTACGCTCTA
AATTGTGTACAAGTTTTGTTGATCCGATGGAATCGCCAGGATCTGTAA
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Coding sequence (CDS) from alignment at tig00000106_pilon:1226444..1228241+

>Gchil3034.t2 ID=Gchil3034.t2|Name=Gchil3034.t2|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=1551bp|location=Sequence derived from alignment at tig00000106_pilon:1226444..1228241+ (Gracilaria chilensis NLEC103_M9 male)
ATGGCTCCCGCTACTCGGCCGCTTGTGTCCTCGCCGTGGACGGGTACCGC
TTTATCGTACGAGGACGCCACCCAGCTCGACAAATTGGAATATGCCCTCG
GCATCAGTCCGTCCTCCGTCAACAGGTATCTCGCCCAGGACGGTGCTGTC
CATTCCATATCGAGTGCTCTATCGGAGGCTTCAAAAGTCATCACCACCGT
CGATGGCCACATCCGTGCCGGAAAACTTCTCTCCACCGTTTCAGACTACA
TAAACTCCAAATCGCGCGCCTCAGCCTTCGGCGAATTCGTCACGGGCTTG
GGCGACACTCTCTTCCACAACTTCATCTCCGCTCTCGAAAACGACAAGGA
GGTCACCTCTTGGTATCTCGCTGGTCTGGGCCCCATTCTTGGCTCACGTT
CCCTTGCTGCGCACGCTAAGGCCGGAGGAAAGCAGGCCGACATTGAACAG
CAAAAGACTTTGTTTGTGTCTGCTACTGCCGAGCTTCTTGCTGCCATCAC
CACAGAAAGTCTGTTGGCCAACAATGAGGACGATGACCAACCTGATCAGC
ACACAACATCCGCCGCGCTCCCTCTCGCGTCCCAATCCAGAATGGATTCC
ATGAGCTATTCATCCATCGCTTCTGGCGGAGGCTACATCCCAACCGTGGC
TGACATCGGGGCCCCGGTCAACCAGGGCTACGCCAGTGCTGGAGACGAGC
AACTCGGTCGTATTCTCTGTGGCGTATCTAAGTTTCTTTCCACTGATGAG
AATCGATCCCTCATCTGCAGTGTGAAGCCGCAATGTGGTCGTCTGCCGAG
CATTCTGGCTGGTCTCCTTGACAAGGACGTGGGCATACCCGTTCAGGTGG
CTTATCAGGCCATTTTCTGCTTGTGGCTTCTGTCGTTTGTCAGCCAGCAG
GATTCCAACGCCGCCTCCATGGATGCCATCTCCGATGCTCTCGAAGAAGC
TGCCGTGCCCCGCCGTCTCACCCATGTTCTCCGCGATATTTTGGCAGAGA
AAGTTGTTCGTGTTTCACTGGCAACCTTGCGAAACATGCTCAACATGTCG
AGCACCCTCAGGAAGGAAATGGTTGGTGCTGGCCTCGTAGGCGCCATCCA
GTCGTTGTGCTTCAGGAGGTGGAACGACGAAGACATTCGCGATGACCTCG
GGGTTGTGGCGGAAGCCCTTCAATCAGAGTTGGCGTCCATGAGCAACTTT
GATGTCTACAGAGGTGAAGTTTTGTCTGGTGCTCTCAAATGGACACCTGC
CCACACGGATGACACTTTCTGGGAAGCAAACGCAGAGAAGCTCGAGCGCA
ACAAGCAGGAAGTTCTACGCTGCTTGGTACGCCTTCTTCATCAATCAAAC
GAAGAGACTGTTTTGGCTGTGGCCTGCAATGACCTCGCTCAGTTCATCAA
GCACAACCCGCGTGGACGAATCATCGCCCAATCCCTCGGCGTCAAGGGAA
GGCTCATGGAACTGATGGTCACTGGAGAAGGTGACGTTCGTCGCTACGCT
CTAAATTGTGTACAAGTTTTGTTGATCCGATGGAATCGCCAGGATCTGTA
A
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