Gchil3014.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGchil3014.t1
Unique NameGchil3014.t1
TypemRNA
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length92
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000106_piloncontigtig00000106_pilon:1022862..1023214 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog130081.XP_005707258.1
PFAMsACBP
Max annot lvl2759|Eukaryota
KEGG koko:K08762
KEGG Pathwayko03320,map03320
Evalue3.61e-34
EggNOG OGsCOG4281@1|root,KOG0817@2759|Eukaryota
Descriptionfatty-acyl-CoA binding
COG categoryI
BRITEko00000,ko00001
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil3014Gchil3014Gracilaria chilensis NLEC103_M9 malegenetig00000106_pilon 1022862..1023214 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil3014.t1Gchil3014.t1Gracilaria chilensis NLEC103_M9 malepolypeptidetig00000106_pilon 1022862..1023214 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil3014.t1.start1Gchil3014.t1.start1Gracilaria chilensis NLEC103_M9 malestart_codontig00000106_pilon 1022862..1022864 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil3014.t1.CDS1Gchil3014.t1.CDS1Gracilaria chilensis NLEC103_M9 maleCDStig00000106_pilon 1022862..1022988 +
Gchil3014.t1.CDS2Gchil3014.t1.CDS2Gracilaria chilensis NLEC103_M9 maleCDStig00000106_pilon 1023066..1023214 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil3014.t1.exon1Gchil3014.t1.exon1Gracilaria chilensis NLEC103_M9 maleexontig00000106_pilon 1022862..1022988 +
Gchil3014.t1.exon2Gchil3014.t1.exon2Gracilaria chilensis NLEC103_M9 maleexontig00000106_pilon 1023066..1023214 +


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil3014.t1.intron1Gchil3014.t1.intron1Gracilaria chilensis NLEC103_M9 maleintrontig00000106_pilon 1022989..1023065 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil3014.t1.stop1Gchil3014.t1.stop1Gracilaria chilensis NLEC103_M9 malestop_codontig00000106_pilon 1023212..1023214 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gchil3014.t1 ID=Gchil3014.t1|Name=Gchil3014.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=92bp
MGLPEVFKESAERVKKLPDASNDDKLELYSLFKQSNAGDCNTNRPGGLFN
LGDKAKWDAWNSRKGMEKDEAMKAYINKVDTLCGTCFASQV*
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spliced messenger RNA

>Gchil3014.t1 ID=Gchil3014.t1|Name=Gchil3014.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=276bp|location=Sequence derived from alignment at tig00000106_pilon:1022862..1023214+ (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGGTCTCCCAGAAGTGTTCAAGGAGTCTGCTGAACGCGTCAAGAAACT
GCCAGACGCTTCCAACGACGACAAGCTTGAGCTCTATTCCCTATTCAAAC
AATCAAACGCTGGAGATTGTAATACAAATCGCCCCGGTGGATTATTCAAC
TTGGGTGATAAGGCGAAGTGGGATGCATGGAACTCCCGGAAAGGAATGGA
AAAAGATGAGGCAATGAAGGCCTACATTAACAAGGTGGATACTCTATGTG
GAACTTGCTTCGCCTCACAGGTCTAA
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protein sequence of Gchil3014.t1

>Gchil3014.t1 ID=Gchil3014.t1|Name=Gchil3014.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=92bp
MGLPEVFKESAERVKKLPDASNDDKLELYSLFKQSNAGDCNTNRPGGLFN
LGDKAKWDAWNSRKGMEKDEAMKAYINKVDTLCGTCFASQV*
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mRNA from alignment at tig00000106_pilon:1022862..1023214+

Legend: polypeptidestart_codonCDSexonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gchil3014.t1 ID=Gchil3014.t1|Name=Gchil3014.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=353bp|location=Sequence derived from alignment at tig00000106_pilon:1022862..1023214+ (Gracilaria chilensis NLEC103_M9 male)
ATGGGTCTCCCAGAAGTGTTCAAGGAGTCTGCTGAACGCGTCAAGAAACT
GCCAGACGCTTCCAACGACGACAAGCTTGAGCTCTATTCCCTATTCAAAC
AATCAAACGCTGGAGATTGTAATACAAGTAAGCTATACCTACCTGGTCAT
GTATTGAGGTATTTAAACGATTTTTTTTGGCTCTAACAAAGCTTCACTAT
GTAGATCGCCCCGGTGGATTATTCAACTTGGGTGATAAGGCGAAGTGGGA
TGCATGGAACTCCCGGAAAGGAATGGAAAAAGATGAGGCAATGAAGGCCT
ACATTAACAAGGTGGATACTCTATGTGGAACTTGCTTCGCCTCACAGGTC
TAA
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Coding sequence (CDS) from alignment at tig00000106_pilon:1022862..1023214+

>Gchil3014.t1 ID=Gchil3014.t1|Name=Gchil3014.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=276bp|location=Sequence derived from alignment at tig00000106_pilon:1022862..1023214+ (Gracilaria chilensis NLEC103_M9 male)
ATGGGTCTCCCAGAAGTGTTCAAGGAGTCTGCTGAACGCGTCAAGAAACT
GCCAGACGCTTCCAACGACGACAAGCTTGAGCTCTATTCCCTATTCAAAC
AATCAAACGCTGGAGATTGTAATACAAATCGCCCCGGTGGATTATTCAAC
TTGGGTGATAAGGCGAAGTGGGATGCATGGAACTCCCGGAAAGGAATGGA
AAAAGATGAGGCAATGAAGGCCTACATTAACAAGGTGGATACTCTATGTG
GAACTTGCTTCGCCTCACAGGTCTAA
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