Gchil7569.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gchil7569.t1
Unique Name	Gchil7569.t1
Type	mRNA
Organism	Gracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length	373

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
tig00000007_pilon	contig	tig00000007_pilon:2049522..2050640 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria chilensis NLEC103_M9 male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	3847.GLYMA16G03640.1
PFAMs	Myb_DNA-binding
Max annot lvl	35493\|Streptophyta
GOs	GO:0001101,GO:0003674,GO:0003700,GO:0006355,GO:0006950,GO:0006970,GO:0008150,GO:0009628,GO:0009651,GO:0009719,GO:0009723,GO:0009725,GO:0009733,GO:0009737,GO:0009739,GO:0009751,GO:0009753,GO:0009889,GO:0010033,GO:0010035,GO:0010038,GO:0010468,GO:0010556,GO:0014070,GO:0019219,GO:0019222,GO:0031323,GO:0031326,GO:0033993,GO:0042221,GO:0042493,GO:0046677,GO:0046686,GO:0050789,GO:0050794,GO:0050896,GO:0051171,GO:0051252,GO:0060255,GO:0065007,GO:0080090,GO:0097305,GO:0140110,GO:1901700,GO:1903506,GO:2000112,GO:2001141
Evalue	2.61e-27
EggNOG OGs	KOG0724@1\|root,KOG0724@2759\|Eukaryota,37MTA@33090\|Viridiplantae,3GDH5@35493\|Streptophyta,4JICY@91835\|fabids
Description	reveille
COG category	K

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gchil7569	Gchil7569	Gracilaria chilensis NLEC103_M9 male	gene	tig00000007_pilon 2049522..2050640 -

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil7569.t1.stop1	Gchil7569.t1.stop1	Gracilaria chilensis NLEC103_M9 male	stop_codon	tig00000007_pilon 2049522..2049524 -

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil7569.t1.CDS1	Gchil7569.t1.CDS1	Gracilaria chilensis NLEC103_M9 male	CDS	tig00000007_pilon 2049522..2050640 -

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil7569.t1.exon1	Gchil7569.t1.exon1	Gracilaria chilensis NLEC103_M9 male	exon	tig00000007_pilon 2049522..2050640 -

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil7569.t1.start1	Gchil7569.t1.start1	Gracilaria chilensis NLEC103_M9 male	start_codon	tig00000007_pilon 2050638..2050640 -

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil7569.t1	Gchil7569.t1	Gracilaria chilensis NLEC103_M9 male	polypeptide	tig00000007_pilon 2049522..2050640 -

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at tig00000007_pilon:2049522..2050640-
coding sequence from alignment at tig00000007_pilon:2049522..2050640-

mRNA sequence

>Gchil7569.t1 ID=Gchil7569.t1|Name=Gchil7569.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=373bp
MPVATQPLTRPPLSMSPTLTSALHAQHFPLAPPHALAVSPHLHAAAIGAS
PPFVQYPIPTKKPRKPYVITKNRESWTAEEHQSFVDALKKHGRNWKLIEQ
HVKTKNVIQIRSHAQKYFLKVQKNNTGEHVPPPRPKRKNSTSNSAAAAAA
AVAAAAAVRSPVLSKPGSAAQSPALYTHPALVRSPNLASYAMQVAATYPY
SPYQMNPHAIAAAMAASQHTAHLRNVHHSPQRRSRSARTSTPDFSSRGAK
RSTSSPSLLRGVDASPAFKVAKVEKTVTSPHTSSAPVAPSGLQSPSPNFA
NIYSFFARMFDPQKEYDVVSIVKEQKMSPLDREVIKLLVSNLELNIANTT
FRQQLLDTYRQQLQQSVQQTVS*

spliced messenger RNA

>Gchil7569.t1 ID=Gchil7569.t1|Name=Gchil7569.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1119bp|location=Sequence derived from alignment at tig00000007_pilon:2049522..2050640- (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCCGGTAGCCACGCAGCCGCTCACCCGCCCGCCTCTCTCCATGTCACC
CACGCTCACCTCCGCCTTGCACGCGCAGCATTTCCCCCTTGCTCCCCCCC
ACGCCCTCGCCGTTTCTCCTCATCTGCATGCCGCAGCCATCGGTGCCAGC
CCACCCTTCGTTCAATACCCCATCCCCACCAAGAAGCCGCGCAAACCCTA
CGTCATCACCAAGAACCGCGAGAGTTGGACCGCCGAGGAGCACCAGTCCT
TCGTCGACGCCCTCAAGAAACATGGCCGCAATTGGAAGCTTATCGAGCAG
CACGTCAAGACCAAGAACGTGATTCAGATTCGCTCCCATGCCCAAAAGTA
CTTTCTCAAGGTGCAGAAGAACAACACTGGCGAACATGTCCCGCCGCCGC
GCCCGAAACGAAAGAATTCCACCTCCAACTCCGCTGCAGCAGCAGCTGCT
GCTGTCGCCGCCGCTGCCGCCGTGCGATCTCCGGTCCTATCCAAGCCTGG
TAGCGCCGCACAAAGCCCCGCCTTGTACACGCATCCTGCCTTGGTACGCT
CCCCAAATCTTGCATCGTATGCCATGCAAGTTGCTGCCACCTACCCATAC
TCTCCGTATCAGATGAATCCTCATGCCATTGCTGCCGCCATGGCCGCTTC
TCAGCACACTGCACACCTTCGAAACGTTCATCATTCGCCGCAGAGACGCT
CGAGAAGCGCTCGTACTTCCACTCCTGATTTTTCTAGCAGAGGTGCAAAA
CGATCCACATCCTCACCGTCCCTTTTGCGAGGCGTAGACGCCAGTCCCGC
GTTCAAGGTCGCAAAAGTTGAGAAGACGGTCACCTCCCCACACACTTCTT
CGGCACCTGTTGCTCCTAGTGGTCTGCAAAGCCCGTCACCAAACTTTGCC
AATATCTACTCCTTCTTTGCCAGGATGTTTGACCCGCAAAAAGAGTATGA
CGTTGTTTCTATTGTTAAAGAGCAGAAAATGTCGCCCTTGGACAGGGAGG
TTATCAAGCTGCTTGTTTCAAACTTGGAGCTCAATATAGCGAACACTACA
TTTAGACAGCAGTTGTTGGATACTTATCGACAGCAGCTGCAGCAATCTGT
ACAGCAGACCGTCTCATGA

protein sequence of Gchil7569.t1

>Gchil7569.t1 ID=Gchil7569.t1|Name=Gchil7569.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=373bp
MPVATQPLTRPPLSMSPTLTSALHAQHFPLAPPHALAVSPHLHAAAIGAS
PPFVQYPIPTKKPRKPYVITKNRESWTAEEHQSFVDALKKHGRNWKLIEQ
HVKTKNVIQIRSHAQKYFLKVQKNNTGEHVPPPRPKRKNSTSNSAAAAAA
AVAAAAAVRSPVLSKPGSAAQSPALYTHPALVRSPNLASYAMQVAATYPY
SPYQMNPHAIAAAMAASQHTAHLRNVHHSPQRRSRSARTSTPDFSSRGAK
RSTSSPSLLRGVDASPAFKVAKVEKTVTSPHTSSAPVAPSGLQSPSPNFA
NIYSFFARMFDPQKEYDVVSIVKEQKMSPLDREVIKLLVSNLELNIANTT
FRQQLLDTYRQQLQQSVQQTVS*

mRNA from alignment at tig00000007_pilon:2049522..2050640-

Legend: polypeptideCDSexonstart_codonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gchil7569.t1 ID=Gchil7569.t1|Name=Gchil7569.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1119bp|location=Sequence derived from alignment at tig00000007_pilon:2049522..2050640- (Gracilaria chilensis NLEC103_M9 male)
ATGCCGGTAGCCACGCAGCCGCTCACCCGCCCGCCTCTCTCCATGTCACC
CACGCTCACCTCCGCCTTGCACGCGCAGCATTTCCCCCTTGCTCCCCCCC
ACGCCCTCGCCGTTTCTCCTCATCTGCATGCCGCAGCCATCGGTGCCAGC
CCACCCTTCGTTCAATACCCCATCCCCACCAAGAAGCCGCGCAAACCCTA
CGTCATCACCAAGAACCGCGAGAGTTGGACCGCCGAGGAGCACCAGTCCT
TCGTCGACGCCCTCAAGAAACATGGCCGCAATTGGAAGCTTATCGAGCAG
CACGTCAAGACCAAGAACGTGATTCAGATTCGCTCCCATGCCCAAAAGTA
CTTTCTCAAGGTGCAGAAGAACAACACTGGCGAACATGTCCCGCCGCCGC
GCCCGAAACGAAAGAATTCCACCTCCAACTCCGCTGCAGCAGCAGCTGCT
GCTGTCGCCGCCGCTGCCGCCGTGCGATCTCCGGTCCTATCCAAGCCTGG
TAGCGCCGCACAAAGCCCCGCCTTGTACACGCATCCTGCCTTGGTACGCT
CCCCAAATCTTGCATCGTATGCCATGCAAGTTGCTGCCACCTACCCATAC
TCTCCGTATCAGATGAATCCTCATGCCATTGCTGCCGCCATGGCCGCTTC
TCAGCACACTGCACACCTTCGAAACGTTCATCATTCGCCGCAGAGACGCT
CGAGAAGCGCTCGTACTTCCACTCCTGATTTTTCTAGCAGAGGTGCAAAA
CGATCCACATCCTCACCGTCCCTTTTGCGAGGCGTAGACGCCAGTCCCGC
GTTCAAGGTCGCAAAAGTTGAGAAGACGGTCACCTCCCCACACACTTCTT
CGGCACCTGTTGCTCCTAGTGGTCTGCAAAGCCCGTCACCAAACTTTGCC
AATATCTACTCCTTCTTTGCCAGGATGTTTGACCCGCAAAAAGAGTATGA
CGTTGTTTCTATTGTTAAAGAGCAGAAAATGTCGCCCTTGGACAGGGAGG
TTATCAAGCTGCTTGTTTCAAACTTGGAGCTCAATATAGCGAACACTACA
TTTAGACAGCAGTTGTTGGATACTTATCGACAGCAGCTGCAGCAATCTGT
ACAGCAGACCGTCTCATGA

Coding sequence (CDS) from alignment at tig00000007_pilon:2049522..2050640-

>Gchil7569.t1 ID=Gchil7569.t1|Name=Gchil7569.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=1119bp|location=Sequence derived from alignment at tig00000007_pilon:2049522..2050640- (Gracilaria chilensis NLEC103_M9 male)
ATGCCGGTAGCCACGCAGCCGCTCACCCGCCCGCCTCTCTCCATGTCACC
CACGCTCACCTCCGCCTTGCACGCGCAGCATTTCCCCCTTGCTCCCCCCC
ACGCCCTCGCCGTTTCTCCTCATCTGCATGCCGCAGCCATCGGTGCCAGC
CCACCCTTCGTTCAATACCCCATCCCCACCAAGAAGCCGCGCAAACCCTA
CGTCATCACCAAGAACCGCGAGAGTTGGACCGCCGAGGAGCACCAGTCCT
TCGTCGACGCCCTCAAGAAACATGGCCGCAATTGGAAGCTTATCGAGCAG
CACGTCAAGACCAAGAACGTGATTCAGATTCGCTCCCATGCCCAAAAGTA
CTTTCTCAAGGTGCAGAAGAACAACACTGGCGAACATGTCCCGCCGCCGC
GCCCGAAACGAAAGAATTCCACCTCCAACTCCGCTGCAGCAGCAGCTGCT
GCTGTCGCCGCCGCTGCCGCCGTGCGATCTCCGGTCCTATCCAAGCCTGG
TAGCGCCGCACAAAGCCCCGCCTTGTACACGCATCCTGCCTTGGTACGCT
CCCCAAATCTTGCATCGTATGCCATGCAAGTTGCTGCCACCTACCCATAC
TCTCCGTATCAGATGAATCCTCATGCCATTGCTGCCGCCATGGCCGCTTC
TCAGCACACTGCACACCTTCGAAACGTTCATCATTCGCCGCAGAGACGCT
CGAGAAGCGCTCGTACTTCCACTCCTGATTTTTCTAGCAGAGGTGCAAAA
CGATCCACATCCTCACCGTCCCTTTTGCGAGGCGTAGACGCCAGTCCCGC
GTTCAAGGTCGCAAAAGTTGAGAAGACGGTCACCTCCCCACACACTTCTT
CGGCACCTGTTGCTCCTAGTGGTCTGCAAAGCCCGTCACCAAACTTTGCC
AATATCTACTCCTTCTTTGCCAGGATGTTTGACCCGCAAAAAGAGTATGA
CGTTGTTTCTATTGTTAAAGAGCAGAAAATGTCGCCCTTGGACAGGGAGG
TTATCAAGCTGCTTGTTTCAAACTTGGAGCTCAATATAGCGAACACTACA
TTTAGACAGCAGTTGTTGGATACTTATCGACAGCAGCTGCAGCAATCTGT
ACAGCAGACCGTCTCATGA