Gchil3064.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGchil3064.t1
Unique NameGchil3064.t1
TypemRNA
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length597
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000106_piloncontigtig00000106_pilon:1625329..1627119 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil3064Gchil3064Gracilaria chilensis NLEC103_M9 malegenetig00000106_pilon 1625329..1627119 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil3064.t1.start1Gchil3064.t1.start1Gracilaria chilensis NLEC103_M9 malestart_codontig00000106_pilon 1625329..1625331 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil3064.t1.CDS1Gchil3064.t1.CDS1Gracilaria chilensis NLEC103_M9 maleCDStig00000106_pilon 1625329..1627119 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil3064.t1.exon1Gchil3064.t1.exon1Gracilaria chilensis NLEC103_M9 maleexontig00000106_pilon 1625329..1627119 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil3064.t1.stop1Gchil3064.t1.stop1Gracilaria chilensis NLEC103_M9 malestop_codontig00000106_pilon 1627117..1627119 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil3064.t1Gchil3064.t1Gracilaria chilensis NLEC103_M9 malepolypeptidetig00000106_pilon 1625329..1627119 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gchil3064.t1 ID=Gchil3064.t1|Name=Gchil3064.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=597bp
MSLSSNPSVAGHIDVPPNRTSHAKDKSHDEDHAPSPSSTIVVQSVSEAAV
RCSANTIFSSLPNDVMARIIHFALAHSQRGVPYYPPIKPPCLVPLSLASR
HFRRMLAAQCESDLGYIDDVYAAGRDDEERLAAKKDLVQFYRVQDGHLKK
FNLHKKSSLSQLFRLYATEIVLSSKPCLTEIDVSDIPKSDTYFARTLQAV
VDVIRHSASSLETLKMGFHNIQFVHMIEALSLPHLKDLNVQLPHSVSTST
LVEFLRKHGARLETLSFSSAGNEVPEEAVGQIVSYAPRIKHLCFNGGMDP
ALSFSFIALIRAYSQLQSVSVHNYGLYEELRSALESHPGKPKVYVRRSLL
SELPRILAEVPSFRRTLVRAETIVCETAGDLMALAQLQNVEELDIRVAAH
MVRDGLGTALSRLKRLTSVTIACETVGGAEATRALVDEQLVHALCKGTAL
RQVVIASPPLCMRSLQKMMSECGERLEYLVAGIRPAGRSHMLCIIEMVKW
AMRHNDNLRVLCFGLGLCHDGTASEWYGELLRTLEEAERRLKRLSTHYLR
LNGKALLTFQKAMEEEWGDDVFDIEEEGAGEYDSEELSEADDAGVN*
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spliced messenger RNA

>Gchil3064.t1 ID=Gchil3064.t1|Name=Gchil3064.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1791bp|location=Sequence derived from alignment at tig00000106_pilon:1625329..1627119+ (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGTCGCTTTCGTCCAATCCATCCGTGGCGGGACACATAGATGTCCCCCC
CAACCGCACCTCGCACGCCAAAGACAAGTCGCACGACGAGGATCATGCCC
CGTCGCCGTCGTCCACCATCGTCGTGCAGTCCGTGTCCGAAGCTGCAGTG
CGGTGCTCTGCAAACACCATCTTTTCGTCGCTCCCGAACGATGTCATGGC
TCGAATAATTCATTTTGCGCTCGCACACTCGCAACGGGGAGTGCCGTACT
ACCCCCCGATCAAGCCGCCTTGTCTGGTGCCGCTGTCCCTTGCGAGTCGG
CATTTTCGCCGCATGCTAGCGGCGCAATGCGAATCAGACCTTGGCTACAT
TGATGACGTGTACGCCGCGGGCAGGGACGACGAGGAACGCTTGGCCGCCA
AGAAGGATTTGGTGCAGTTTTACCGAGTGCAGGATGGGCACCTCAAGAAG
TTTAACCTTCACAAAAAGTCGAGCCTCAGCCAGTTGTTTCGACTGTACGC
GACGGAAATCGTGCTTTCCTCCAAACCGTGCCTCACGGAGATCGATGTGT
CGGACATTCCGAAGAGCGACACGTACTTTGCGCGCACGCTACAAGCGGTG
GTAGACGTGATTCGACACTCGGCTTCATCGCTGGAGACGCTCAAGATGGG
CTTTCACAACATCCAGTTTGTGCACATGATTGAGGCACTGTCGCTTCCGC
ATCTCAAGGACCTCAACGTGCAGCTGCCTCACAGTGTTTCGACGTCGACG
CTGGTTGAATTCCTCCGCAAGCACGGCGCTCGGCTTGAGACGCTGAGCTT
TTCGTCGGCCGGCAACGAAGTACCGGAGGAGGCGGTGGGGCAGATTGTGT
CGTACGCGCCGCGCATCAAACACCTTTGCTTCAACGGCGGCATGGATCCG
GCTTTGTCGTTTTCTTTCATAGCGCTCATACGCGCGTACTCGCAGCTGCA
GAGCGTGTCTGTGCACAATTACGGGCTGTACGAGGAGCTTCGCAGCGCGC
TGGAATCGCACCCCGGCAAGCCCAAGGTGTATGTGCGACGGTCGCTGCTC
AGCGAGCTGCCGCGGATATTGGCGGAGGTGCCGTCGTTCCGCAGGACGCT
TGTGAGGGCGGAGACGATTGTGTGCGAAACGGCGGGCGACTTGATGGCAC
TGGCACAGCTGCAAAACGTCGAGGAGCTGGACATTCGCGTGGCGGCGCAC
ATGGTGCGCGACGGGCTTGGAACGGCGCTGTCGCGGCTGAAGAGGCTCAC
GTCGGTGACGATCGCATGTGAGACGGTGGGGGGGGCTGAGGCGACTCGCG
CGCTGGTGGACGAACAACTGGTGCACGCGCTGTGTAAGGGCACGGCGCTA
CGACAGGTGGTGATTGCGTCGCCACCGCTGTGCATGCGCTCGTTGCAGAA
AATGATGAGTGAGTGCGGAGAGCGGCTGGAGTACTTGGTGGCGGGGATCC
GGCCGGCGGGGCGATCGCACATGCTGTGCATCATTGAGATGGTGAAATGG
GCCATGCGCCATAACGACAACCTGAGGGTGCTGTGTTTTGGGCTGGGGTT
GTGCCATGACGGCACGGCTAGCGAGTGGTATGGCGAACTGTTGCGCACTC
TGGAGGAGGCGGAGCGGCGGCTGAAGCGGCTCAGCACGCACTACTTGCGG
CTGAACGGCAAGGCGCTGCTCACGTTTCAGAAGGCGATGGAGGAGGAATG
GGGGGATGACGTGTTCGACATCGAGGAGGAAGGCGCTGGGGAGTACGACA
GTGAGGAGCTTTCGGAGGCGGACGACGCGGGCGTAAATTGA
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protein sequence of Gchil3064.t1

>Gchil3064.t1 ID=Gchil3064.t1|Name=Gchil3064.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=597bp
MSLSSNPSVAGHIDVPPNRTSHAKDKSHDEDHAPSPSSTIVVQSVSEAAV
RCSANTIFSSLPNDVMARIIHFALAHSQRGVPYYPPIKPPCLVPLSLASR
HFRRMLAAQCESDLGYIDDVYAAGRDDEERLAAKKDLVQFYRVQDGHLKK
FNLHKKSSLSQLFRLYATEIVLSSKPCLTEIDVSDIPKSDTYFARTLQAV
VDVIRHSASSLETLKMGFHNIQFVHMIEALSLPHLKDLNVQLPHSVSTST
LVEFLRKHGARLETLSFSSAGNEVPEEAVGQIVSYAPRIKHLCFNGGMDP
ALSFSFIALIRAYSQLQSVSVHNYGLYEELRSALESHPGKPKVYVRRSLL
SELPRILAEVPSFRRTLVRAETIVCETAGDLMALAQLQNVEELDIRVAAH
MVRDGLGTALSRLKRLTSVTIACETVGGAEATRALVDEQLVHALCKGTAL
RQVVIASPPLCMRSLQKMMSECGERLEYLVAGIRPAGRSHMLCIIEMVKW
AMRHNDNLRVLCFGLGLCHDGTASEWYGELLRTLEEAERRLKRLSTHYLR
LNGKALLTFQKAMEEEWGDDVFDIEEEGAGEYDSEELSEADDAGVN*
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mRNA from alignment at tig00000106_pilon:1625329..1627119+

Legend: start_codonpolypeptideCDSexonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gchil3064.t1 ID=Gchil3064.t1|Name=Gchil3064.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1791bp|location=Sequence derived from alignment at tig00000106_pilon:1625329..1627119+ (Gracilaria chilensis NLEC103_M9 male)
ATGTCGCTTTCGTCCAATCCATCCGTGGCGGGACACATAGATGTCCCCCC
CAACCGCACCTCGCACGCCAAAGACAAGTCGCACGACGAGGATCATGCCC
CGTCGCCGTCGTCCACCATCGTCGTGCAGTCCGTGTCCGAAGCTGCAGTG
CGGTGCTCTGCAAACACCATCTTTTCGTCGCTCCCGAACGATGTCATGGC
TCGAATAATTCATTTTGCGCTCGCACACTCGCAACGGGGAGTGCCGTACT
ACCCCCCGATCAAGCCGCCTTGTCTGGTGCCGCTGTCCCTTGCGAGTCGG
CATTTTCGCCGCATGCTAGCGGCGCAATGCGAATCAGACCTTGGCTACAT
TGATGACGTGTACGCCGCGGGCAGGGACGACGAGGAACGCTTGGCCGCCA
AGAAGGATTTGGTGCAGTTTTACCGAGTGCAGGATGGGCACCTCAAGAAG
TTTAACCTTCACAAAAAGTCGAGCCTCAGCCAGTTGTTTCGACTGTACGC
GACGGAAATCGTGCTTTCCTCCAAACCGTGCCTCACGGAGATCGATGTGT
CGGACATTCCGAAGAGCGACACGTACTTTGCGCGCACGCTACAAGCGGTG
GTAGACGTGATTCGACACTCGGCTTCATCGCTGGAGACGCTCAAGATGGG
CTTTCACAACATCCAGTTTGTGCACATGATTGAGGCACTGTCGCTTCCGC
ATCTCAAGGACCTCAACGTGCAGCTGCCTCACAGTGTTTCGACGTCGACG
CTGGTTGAATTCCTCCGCAAGCACGGCGCTCGGCTTGAGACGCTGAGCTT
TTCGTCGGCCGGCAACGAAGTACCGGAGGAGGCGGTGGGGCAGATTGTGT
CGTACGCGCCGCGCATCAAACACCTTTGCTTCAACGGCGGCATGGATCCG
GCTTTGTCGTTTTCTTTCATAGCGCTCATACGCGCGTACTCGCAGCTGCA
GAGCGTGTCTGTGCACAATTACGGGCTGTACGAGGAGCTTCGCAGCGCGC
TGGAATCGCACCCCGGCAAGCCCAAGGTGTATGTGCGACGGTCGCTGCTC
AGCGAGCTGCCGCGGATATTGGCGGAGGTGCCGTCGTTCCGCAGGACGCT
TGTGAGGGCGGAGACGATTGTGTGCGAAACGGCGGGCGACTTGATGGCAC
TGGCACAGCTGCAAAACGTCGAGGAGCTGGACATTCGCGTGGCGGCGCAC
ATGGTGCGCGACGGGCTTGGAACGGCGCTGTCGCGGCTGAAGAGGCTCAC
GTCGGTGACGATCGCATGTGAGACGGTGGGGGGGGCTGAGGCGACTCGCG
CGCTGGTGGACGAACAACTGGTGCACGCGCTGTGTAAGGGCACGGCGCTA
CGACAGGTGGTGATTGCGTCGCCACCGCTGTGCATGCGCTCGTTGCAGAA
AATGATGAGTGAGTGCGGAGAGCGGCTGGAGTACTTGGTGGCGGGGATCC
GGCCGGCGGGGCGATCGCACATGCTGTGCATCATTGAGATGGTGAAATGG
GCCATGCGCCATAACGACAACCTGAGGGTGCTGTGTTTTGGGCTGGGGTT
GTGCCATGACGGCACGGCTAGCGAGTGGTATGGCGAACTGTTGCGCACTC
TGGAGGAGGCGGAGCGGCGGCTGAAGCGGCTCAGCACGCACTACTTGCGG
CTGAACGGCAAGGCGCTGCTCACGTTTCAGAAGGCGATGGAGGAGGAATG
GGGGGATGACGTGTTCGACATCGAGGAGGAAGGCGCTGGGGAGTACGACA
GTGAGGAGCTTTCGGAGGCGGACGACGCGGGCGTAAATTGA
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Coding sequence (CDS) from alignment at tig00000106_pilon:1625329..1627119+

>Gchil3064.t1 ID=Gchil3064.t1|Name=Gchil3064.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=1791bp|location=Sequence derived from alignment at tig00000106_pilon:1625329..1627119+ (Gracilaria chilensis NLEC103_M9 male)
ATGTCGCTTTCGTCCAATCCATCCGTGGCGGGACACATAGATGTCCCCCC
CAACCGCACCTCGCACGCCAAAGACAAGTCGCACGACGAGGATCATGCCC
CGTCGCCGTCGTCCACCATCGTCGTGCAGTCCGTGTCCGAAGCTGCAGTG
CGGTGCTCTGCAAACACCATCTTTTCGTCGCTCCCGAACGATGTCATGGC
TCGAATAATTCATTTTGCGCTCGCACACTCGCAACGGGGAGTGCCGTACT
ACCCCCCGATCAAGCCGCCTTGTCTGGTGCCGCTGTCCCTTGCGAGTCGG
CATTTTCGCCGCATGCTAGCGGCGCAATGCGAATCAGACCTTGGCTACAT
TGATGACGTGTACGCCGCGGGCAGGGACGACGAGGAACGCTTGGCCGCCA
AGAAGGATTTGGTGCAGTTTTACCGAGTGCAGGATGGGCACCTCAAGAAG
TTTAACCTTCACAAAAAGTCGAGCCTCAGCCAGTTGTTTCGACTGTACGC
GACGGAAATCGTGCTTTCCTCCAAACCGTGCCTCACGGAGATCGATGTGT
CGGACATTCCGAAGAGCGACACGTACTTTGCGCGCACGCTACAAGCGGTG
GTAGACGTGATTCGACACTCGGCTTCATCGCTGGAGACGCTCAAGATGGG
CTTTCACAACATCCAGTTTGTGCACATGATTGAGGCACTGTCGCTTCCGC
ATCTCAAGGACCTCAACGTGCAGCTGCCTCACAGTGTTTCGACGTCGACG
CTGGTTGAATTCCTCCGCAAGCACGGCGCTCGGCTTGAGACGCTGAGCTT
TTCGTCGGCCGGCAACGAAGTACCGGAGGAGGCGGTGGGGCAGATTGTGT
CGTACGCGCCGCGCATCAAACACCTTTGCTTCAACGGCGGCATGGATCCG
GCTTTGTCGTTTTCTTTCATAGCGCTCATACGCGCGTACTCGCAGCTGCA
GAGCGTGTCTGTGCACAATTACGGGCTGTACGAGGAGCTTCGCAGCGCGC
TGGAATCGCACCCCGGCAAGCCCAAGGTGTATGTGCGACGGTCGCTGCTC
AGCGAGCTGCCGCGGATATTGGCGGAGGTGCCGTCGTTCCGCAGGACGCT
TGTGAGGGCGGAGACGATTGTGTGCGAAACGGCGGGCGACTTGATGGCAC
TGGCACAGCTGCAAAACGTCGAGGAGCTGGACATTCGCGTGGCGGCGCAC
ATGGTGCGCGACGGGCTTGGAACGGCGCTGTCGCGGCTGAAGAGGCTCAC
GTCGGTGACGATCGCATGTGAGACGGTGGGGGGGGCTGAGGCGACTCGCG
CGCTGGTGGACGAACAACTGGTGCACGCGCTGTGTAAGGGCACGGCGCTA
CGACAGGTGGTGATTGCGTCGCCACCGCTGTGCATGCGCTCGTTGCAGAA
AATGATGAGTGAGTGCGGAGAGCGGCTGGAGTACTTGGTGGCGGGGATCC
GGCCGGCGGGGCGATCGCACATGCTGTGCATCATTGAGATGGTGAAATGG
GCCATGCGCCATAACGACAACCTGAGGGTGCTGTGTTTTGGGCTGGGGTT
GTGCCATGACGGCACGGCTAGCGAGTGGTATGGCGAACTGTTGCGCACTC
TGGAGGAGGCGGAGCGGCGGCTGAAGCGGCTCAGCACGCACTACTTGCGG
CTGAACGGCAAGGCGCTGCTCACGTTTCAGAAGGCGATGGAGGAGGAATG
GGGGGATGACGTGTTCGACATCGAGGAGGAAGGCGCTGGGGAGTACGACA
GTGAGGAGCTTTCGGAGGCGGACGACGCGGGCGTAAATTGA
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