Gchil2958.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gchil2958.t1
Unique Name	Gchil2958.t1
Type	mRNA
Organism	Gracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length	522

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
tig00000106_pilon	contig	tig00000106_pilon:503290..504855 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria chilensis NLEC103_M9 male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	130081.XP_005707902.1
Preferred name	HOM3
PFAMs	AA_kinase,ACT,ACT_7
Max annot lvl	2759\|Eukaryota
KEGG rclass	RC00002,RC00043
KEGG ko	ko:K00928
KEGG Reaction	R00480
KEGG Pathway	ko00260,ko00261,ko00270,ko00300,ko01100,ko01110,ko01120,ko01130,ko01210,ko01230,map00260,map00261,map00270,map00300,map01100,map01110,map01120,map01130,map01210,map01230
KEGG Module	M00016,M00017,M00018,M00033,M00525,M00526,M00527
GOs	GO:0000096,GO:0000097,GO:0003674,GO:0003824,GO:0004072,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006082,GO:0006520,GO:0006531,GO:0006553,GO:0006555,GO:0006566,GO:0006790,GO:0006793,GO:0006796,GO:0006807,GO:0008150,GO:0008152,GO:0008652,GO:0009058,GO:0009066,GO:0009067,GO:0009069,GO:0009070,GO:0009085,GO:0009086,GO:0009088,GO:0009089,GO:0009090,GO:0009092,GO:0009987,GO:0016053,GO:0016301,GO:0016310,GO:0016740,GO:0016772,GO:0016774,GO:0019202,GO:0019752,GO:0043436,GO:0043648,GO:0044237,GO:0044238,GO:0044249,GO:0044272,GO:0044281,GO:0044283,GO:0044424,GO:0044464,GO:0046394,GO:0046451,GO:0071704,GO:1901564,GO:1901566,GO:1901576,GO:1901605,GO:1901607
Evalue	6.2e-200
EggNOG OGs	COG0527@1\|root,KOG0456@2759\|Eukaryota
EC	2.7.2.4
Description	aspartate kinase activity
COG category	E
BRITE	ko00000,ko00001,ko00002,ko01000

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gchil2958	Gchil2958	Gracilaria chilensis NLEC103_M9 male	gene	tig00000106_pilon 503290..504855 -

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil2958.t1.stop1	Gchil2958.t1.stop1	Gracilaria chilensis NLEC103_M9 male	stop_codon	tig00000106_pilon 503290..503292 -

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil2958.t1.CDS1	Gchil2958.t1.CDS1	Gracilaria chilensis NLEC103_M9 male	CDS	tig00000106_pilon 503290..504855 -

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil2958.t1.exon1	Gchil2958.t1.exon1	Gracilaria chilensis NLEC103_M9 male	exon	tig00000106_pilon 503290..504855 -

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil2958.t1.start1	Gchil2958.t1.start1	Gracilaria chilensis NLEC103_M9 male	start_codon	tig00000106_pilon 504853..504855 -

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil2958.t1	Gchil2958.t1	Gracilaria chilensis NLEC103_M9 male	polypeptide	tig00000106_pilon 503290..504855 -

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at tig00000106_pilon:503290..504855-
coding sequence from alignment at tig00000106_pilon:503290..504855-

mRNA sequence

>Gchil2958.t1 ID=Gchil2958.t1|Name=Gchil2958.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=522bp
METAFVTLLPVDTRRSSVRQNLLSSRRPSLSVASEQRRSGAIHVTPVATS
TSPSPVSPPRLDAPTKLDRVVCKFGGSSLANADRLREVTKLVLGQIECTK
KMPIVVLSAMGPSTNDLLTAGERALNQGIVDTTSIRFRAYEACESLSLNK
QDLVDPLLHNLDELLVGIKFIKELSPRTLDYLVSFGERLSVRIFAAHLRQ
NESIPAEHVDAYDAGFVTNSSFTRAELLEQSFENVRHFFDTCIKDDHLAV
VTGFIAKDRNGNITTLGRGGSDLTAATIGAALGTSEVQVWKDVDGILSTD
PRIVTEAVPIPSISFEEAAEMAFFGAKVLHPIAMQPAMKYNVPVRVKNSY
NPDHPGTVILRERVLGSVNPVTAISVKRNVQIVDIVSTRMLGASGFLAEV
FKCFAYHKVSVDMIATSEVSISMTLDNSVCDSETLIQLKEDLSNYALVSL
SERNKAIISLVSDSSRSSSVVGRAVSVLDRTGVTVLMISQGASKYNISIT
IESEDANTAVRVIHDEFFSSG*

spliced messenger RNA

>Gchil2958.t1 ID=Gchil2958.t1|Name=Gchil2958.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1566bp|location=Sequence derived from alignment at tig00000106_pilon:503290..504855- (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGAAACAGCATTTGTAACTTTGTTGCCGGTGGATACACGACGATCTTC
CGTTAGACAAAATCTCCTTTCGAGTCGCAGGCCAAGTCTCTCTGTGGCTA
GCGAACAGCGGCGCTCTGGGGCGATCCATGTCACTCCAGTTGCTACATCT
ACATCTCCCTCGCCTGTTTCTCCGCCTCGGCTCGATGCACCTACAAAGTT
AGACCGCGTAGTATGCAAGTTTGGGGGTTCGAGCCTTGCCAACGCGGATC
GTCTGAGAGAAGTCACCAAGCTCGTTTTGGGGCAGATCGAGTGCACTAAG
AAGATGCCCATTGTCGTCTTATCTGCTATGGGGCCCAGCACGAACGATCT
TCTAACTGCGGGTGAAAGAGCTCTCAATCAGGGCATTGTCGATACTACTT
CCATCCGTTTCCGTGCGTATGAAGCATGTGAATCCCTCTCTCTCAACAAG
CAAGACCTTGTGGATCCATTGCTGCACAACTTAGATGAGCTTTTAGTAGG
CATTAAGTTTATCAAGGAACTCAGCCCCCGTACACTGGACTATCTGGTCA
GCTTTGGAGAACGACTAAGTGTGCGCATTTTTGCTGCACATCTGCGCCAA
AATGAAAGTATACCCGCTGAACACGTTGATGCGTATGACGCTGGCTTTGT
TACAAATTCAAGTTTCACCCGCGCCGAACTGCTCGAACAATCGTTTGAAA
ACGTGAGACATTTCTTTGACACGTGCATTAAGGATGATCATCTTGCCGTC
GTCACTGGTTTCATCGCAAAAGATCGGAACGGAAATATTACAACCTTAGG
TCGTGGTGGTAGTGACCTTACCGCCGCTACCATAGGCGCAGCGCTTGGTA
CATCAGAAGTTCAGGTCTGGAAAGATGTAGACGGCATTTTGTCCACAGAC
CCTCGTATCGTCACAGAGGCTGTTCCGATTCCATCTATTTCGTTCGAAGA
GGCTGCTGAAATGGCGTTCTTCGGGGCTAAAGTGTTGCACCCAATCGCCA
TGCAACCTGCCATGAAGTACAATGTACCTGTGCGTGTAAAGAACAGCTAC
AATCCAGATCATCCAGGAACTGTTATTCTACGTGAACGAGTTCTTGGATC
AGTCAATCCAGTTACCGCCATCAGTGTGAAAAGAAATGTTCAGATTGTTG
ATATTGTCAGCACGCGTATGTTGGGCGCCTCGGGATTTCTAGCGGAGGTA
TTCAAATGCTTCGCCTATCACAAGGTTTCTGTCGATATGATTGCCACGTC
TGAAGTGTCAATATCTATGACACTTGATAATAGCGTCTGTGATTCTGAAA
CACTGATACAATTGAAAGAGGATCTCAGCAACTATGCTCTTGTATCGCTT
TCTGAGAGAAACAAAGCTATAATCTCGCTAGTCTCCGACTCGTCGAGGAG
CAGTAGTGTTGTCGGCCGTGCTGTCTCGGTACTTGACAGGACTGGGGTTA
CGGTGCTAATGATTTCTCAAGGTGCGAGCAAATATAATATATCGATCACC
ATTGAGTCCGAAGATGCGAATACTGCGGTTCGGGTTATTCATGATGAGTT
TTTCTCGTCAGGGTAA

protein sequence of Gchil2958.t1

>Gchil2958.t1 ID=Gchil2958.t1|Name=Gchil2958.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=522bp
METAFVTLLPVDTRRSSVRQNLLSSRRPSLSVASEQRRSGAIHVTPVATS
TSPSPVSPPRLDAPTKLDRVVCKFGGSSLANADRLREVTKLVLGQIECTK
KMPIVVLSAMGPSTNDLLTAGERALNQGIVDTTSIRFRAYEACESLSLNK
QDLVDPLLHNLDELLVGIKFIKELSPRTLDYLVSFGERLSVRIFAAHLRQ
NESIPAEHVDAYDAGFVTNSSFTRAELLEQSFENVRHFFDTCIKDDHLAV
VTGFIAKDRNGNITTLGRGGSDLTAATIGAALGTSEVQVWKDVDGILSTD
PRIVTEAVPIPSISFEEAAEMAFFGAKVLHPIAMQPAMKYNVPVRVKNSY
NPDHPGTVILRERVLGSVNPVTAISVKRNVQIVDIVSTRMLGASGFLAEV
FKCFAYHKVSVDMIATSEVSISMTLDNSVCDSETLIQLKEDLSNYALVSL
SERNKAIISLVSDSSRSSSVVGRAVSVLDRTGVTVLMISQGASKYNISIT
IESEDANTAVRVIHDEFFSSG*

mRNA from alignment at tig00000106_pilon:503290..504855-

Legend: polypeptideCDSexonstart_codonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gchil2958.t1 ID=Gchil2958.t1|Name=Gchil2958.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1566bp|location=Sequence derived from alignment at tig00000106_pilon:503290..504855- (Gracilaria chilensis NLEC103_M9 male)
ATGGAAACAGCATTTGTAACTTTGTTGCCGGTGGATACACGACGATCTTC
CGTTAGACAAAATCTCCTTTCGAGTCGCAGGCCAAGTCTCTCTGTGGCTA
GCGAACAGCGGCGCTCTGGGGCGATCCATGTCACTCCAGTTGCTACATCT
ACATCTCCCTCGCCTGTTTCTCCGCCTCGGCTCGATGCACCTACAAAGTT
AGACCGCGTAGTATGCAAGTTTGGGGGTTCGAGCCTTGCCAACGCGGATC
GTCTGAGAGAAGTCACCAAGCTCGTTTTGGGGCAGATCGAGTGCACTAAG
AAGATGCCCATTGTCGTCTTATCTGCTATGGGGCCCAGCACGAACGATCT
TCTAACTGCGGGTGAAAGAGCTCTCAATCAGGGCATTGTCGATACTACTT
CCATCCGTTTCCGTGCGTATGAAGCATGTGAATCCCTCTCTCTCAACAAG
CAAGACCTTGTGGATCCATTGCTGCACAACTTAGATGAGCTTTTAGTAGG
CATTAAGTTTATCAAGGAACTCAGCCCCCGTACACTGGACTATCTGGTCA
GCTTTGGAGAACGACTAAGTGTGCGCATTTTTGCTGCACATCTGCGCCAA
AATGAAAGTATACCCGCTGAACACGTTGATGCGTATGACGCTGGCTTTGT
TACAAATTCAAGTTTCACCCGCGCCGAACTGCTCGAACAATCGTTTGAAA
ACGTGAGACATTTCTTTGACACGTGCATTAAGGATGATCATCTTGCCGTC
GTCACTGGTTTCATCGCAAAAGATCGGAACGGAAATATTACAACCTTAGG
TCGTGGTGGTAGTGACCTTACCGCCGCTACCATAGGCGCAGCGCTTGGTA
CATCAGAAGTTCAGGTCTGGAAAGATGTAGACGGCATTTTGTCCACAGAC
CCTCGTATCGTCACAGAGGCTGTTCCGATTCCATCTATTTCGTTCGAAGA
GGCTGCTGAAATGGCGTTCTTCGGGGCTAAAGTGTTGCACCCAATCGCCA
TGCAACCTGCCATGAAGTACAATGTACCTGTGCGTGTAAAGAACAGCTAC
AATCCAGATCATCCAGGAACTGTTATTCTACGTGAACGAGTTCTTGGATC
AGTCAATCCAGTTACCGCCATCAGTGTGAAAAGAAATGTTCAGATTGTTG
ATATTGTCAGCACGCGTATGTTGGGCGCCTCGGGATTTCTAGCGGAGGTA
TTCAAATGCTTCGCCTATCACAAGGTTTCTGTCGATATGATTGCCACGTC
TGAAGTGTCAATATCTATGACACTTGATAATAGCGTCTGTGATTCTGAAA
CACTGATACAATTGAAAGAGGATCTCAGCAACTATGCTCTTGTATCGCTT
TCTGAGAGAAACAAAGCTATAATCTCGCTAGTCTCCGACTCGTCGAGGAG
CAGTAGTGTTGTCGGCCGTGCTGTCTCGGTACTTGACAGGACTGGGGTTA
CGGTGCTAATGATTTCTCAAGGTGCGAGCAAATATAATATATCGATCACC
ATTGAGTCCGAAGATGCGAATACTGCGGTTCGGGTTATTCATGATGAGTT
TTTCTCGTCAGGGTAA

Coding sequence (CDS) from alignment at tig00000106_pilon:503290..504855-

>Gchil2958.t1 ID=Gchil2958.t1|Name=Gchil2958.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=1566bp|location=Sequence derived from alignment at tig00000106_pilon:503290..504855- (Gracilaria chilensis NLEC103_M9 male)
ATGGAAACAGCATTTGTAACTTTGTTGCCGGTGGATACACGACGATCTTC
CGTTAGACAAAATCTCCTTTCGAGTCGCAGGCCAAGTCTCTCTGTGGCTA
GCGAACAGCGGCGCTCTGGGGCGATCCATGTCACTCCAGTTGCTACATCT
ACATCTCCCTCGCCTGTTTCTCCGCCTCGGCTCGATGCACCTACAAAGTT
AGACCGCGTAGTATGCAAGTTTGGGGGTTCGAGCCTTGCCAACGCGGATC
GTCTGAGAGAAGTCACCAAGCTCGTTTTGGGGCAGATCGAGTGCACTAAG
AAGATGCCCATTGTCGTCTTATCTGCTATGGGGCCCAGCACGAACGATCT
TCTAACTGCGGGTGAAAGAGCTCTCAATCAGGGCATTGTCGATACTACTT
CCATCCGTTTCCGTGCGTATGAAGCATGTGAATCCCTCTCTCTCAACAAG
CAAGACCTTGTGGATCCATTGCTGCACAACTTAGATGAGCTTTTAGTAGG
CATTAAGTTTATCAAGGAACTCAGCCCCCGTACACTGGACTATCTGGTCA
GCTTTGGAGAACGACTAAGTGTGCGCATTTTTGCTGCACATCTGCGCCAA
AATGAAAGTATACCCGCTGAACACGTTGATGCGTATGACGCTGGCTTTGT
TACAAATTCAAGTTTCACCCGCGCCGAACTGCTCGAACAATCGTTTGAAA
ACGTGAGACATTTCTTTGACACGTGCATTAAGGATGATCATCTTGCCGTC
GTCACTGGTTTCATCGCAAAAGATCGGAACGGAAATATTACAACCTTAGG
TCGTGGTGGTAGTGACCTTACCGCCGCTACCATAGGCGCAGCGCTTGGTA
CATCAGAAGTTCAGGTCTGGAAAGATGTAGACGGCATTTTGTCCACAGAC
CCTCGTATCGTCACAGAGGCTGTTCCGATTCCATCTATTTCGTTCGAAGA
GGCTGCTGAAATGGCGTTCTTCGGGGCTAAAGTGTTGCACCCAATCGCCA
TGCAACCTGCCATGAAGTACAATGTACCTGTGCGTGTAAAGAACAGCTAC
AATCCAGATCATCCAGGAACTGTTATTCTACGTGAACGAGTTCTTGGATC
AGTCAATCCAGTTACCGCCATCAGTGTGAAAAGAAATGTTCAGATTGTTG
ATATTGTCAGCACGCGTATGTTGGGCGCCTCGGGATTTCTAGCGGAGGTA
TTCAAATGCTTCGCCTATCACAAGGTTTCTGTCGATATGATTGCCACGTC
TGAAGTGTCAATATCTATGACACTTGATAATAGCGTCTGTGATTCTGAAA
CACTGATACAATTGAAAGAGGATCTCAGCAACTATGCTCTTGTATCGCTT
TCTGAGAGAAACAAAGCTATAATCTCGCTAGTCTCCGACTCGTCGAGGAG
CAGTAGTGTTGTCGGCCGTGCTGTCTCGGTACTTGACAGGACTGGGGTTA
CGGTGCTAATGATTTCTCAAGGTGCGAGCAAATATAATATATCGATCACC
ATTGAGTCCGAAGATGCGAATACTGCGGTTCGGGTTATTCATGATGAGTT
TTTCTCGTCAGGGTAA