Gchil2892.t2 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gchil2892.t2
Unique Name	Gchil2892.t2
Type	mRNA
Organism	Gracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length	284

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
tig00000106_pilon	contig	tig00000106_pilon:46258..47109 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria chilensis NLEC103_M9 male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	45157.CMK186CT
Preferred name	YIF1B
PFAMs	YIF1
Max annot lvl	2759\|Eukaryota
KEGG ko	ko:K08023,ko:K20362
GOs	GO:0000139,GO:0000902,GO:0002790,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005783,GO:0005789,GO:0005793,GO:0005794,GO:0005798,GO:0006810,GO:0006886,GO:0006888,GO:0006950,GO:0006986,GO:0007154,GO:0007165,GO:0008104,GO:0008150,GO:0009306,GO:0009653,GO:0009987,GO:0010033,GO:0012505,GO:0015031,GO:0015833,GO:0016020,GO:0016021,GO:0016043,GO:0016192,GO:0023052,GO:0030134,GO:0030135,GO:0030173,GO:0030968,GO:0031090,GO:0031224,GO:0031228,GO:0031300,GO:0031301,GO:0031410,GO:0031982,GO:0031984,GO:0032502,GO:0032940,GO:0032989,GO:0033036,GO:0033554,GO:0034613,GO:0034620,GO:0034976,GO:0035966,GO:0035967,GO:0036498,GO:0042175,GO:0042221,GO:0042886,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044422,GO:0044424,GO:0044425,GO:0044431,GO:0044432,GO:0044444,GO:0044446,GO:0044464,GO:0045184,GO:0046903,GO:0046907,GO:0048193,GO:0048856,GO:0048869,GO:0050789,GO:0050794,GO:0050896,GO:0051179,GO:0051234,GO:0051641,GO:0051649,GO:0051716,GO:0065007,GO:0070727,GO:0070887,GO:0071310,GO:0071702,GO:0071705,GO:0071840,GO:0097708,GO:0098588,GO:0098791,GO:0098827
Evalue	1.92e-45
EggNOG OGs	COG5197@1\|root,KOG3094@2759\|Eukaryota
Description	ER to Golgi vesicle-mediated transport
COG category	I
BRITE	ko00000,ko04131

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gchil2892	Gchil2892	Gracilaria chilensis NLEC103_M9 male	gene	tig00000106_pilon 45655..47109 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil2892.t2.start1	Gchil2892.t2.start1	Gracilaria chilensis NLEC103_M9 male	start_codon	tig00000106_pilon 46258..46260 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil2892.t2.CDS1	Gchil2892.t2.CDS1	Gracilaria chilensis NLEC103_M9 male	CDS	tig00000106_pilon 46258..47109 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil2892.t2.exon1	Gchil2892.t2.exon1	Gracilaria chilensis NLEC103_M9 male	exon	tig00000106_pilon 46258..47109 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil2892.t2.stop1	Gchil2892.t2.stop1	Gracilaria chilensis NLEC103_M9 male	stop_codon	tig00000106_pilon 47107..47109 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil2892.t2	Gchil2892.t2	Gracilaria chilensis NLEC103_M9 male	polypeptide	tig00000106_pilon 46258..47109 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at tig00000106_pilon:46258..47109+
coding sequence from alignment at tig00000106_pilon:46258..47109+

mRNA sequence

>Gchil2892.t2 ID=Gchil2892.t2|Name=Gchil2892.t2|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=284bp
MSQPQSSHADPLQNGMAFVFAGMQQMASGSAPAANVGAQLFQTLAPGAMG
YGNQLFGQGQERVSSFMKMPKYYFAVNHKYVLKKLILLLAPFRNRTWARQ
RGIDAAQFEVSGSDGATSYLPPRDDVNAPDLYIPVMSFLTYVLLVGFVFG
MQEKFKAEILARYFSRGLGVLTLEVLIIKLGLYLINARPTPWLDVIAYRG
YKFVGVVLTMSTGILVRRLYYPVLLYSATAMGIFLMRSHRRIILPRDMDS
HQAHDLARRNFFLLFLSVLQYPVYWVLVLDPRH*

spliced messenger RNA

>Gchil2892.t2 ID=Gchil2892.t2|Name=Gchil2892.t2|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=852bp|location=Sequence derived from alignment at tig00000106_pilon:46258..47109+ (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGAGCCAGCCGCAATCATCCCATGCTGATCCCTTGCAAAACGGTATGGC
ATTTGTGTTTGCTGGAATGCAACAGATGGCCAGTGGAAGCGCACCAGCTG
CTAATGTTGGTGCTCAACTGTTTCAAACTTTAGCGCCAGGTGCTATGGGG
TACGGAAATCAGCTGTTCGGCCAAGGACAAGAGCGCGTCAGTAGCTTCAT
GAAGATGCCAAAGTATTACTTTGCTGTCAATCACAAGTACGTCTTGAAAA
AGCTCATACTACTGCTTGCCCCGTTTAGAAATCGAACTTGGGCAAGACAG
AGGGGGATTGACGCAGCACAATTTGAGGTGTCGGGCAGTGATGGTGCTAC
ATCATACCTTCCCCCTCGCGATGATGTCAATGCTCCAGATCTGTACATAC
CTGTGATGTCCTTCCTTACATACGTTCTCTTGGTCGGTTTTGTTTTTGGT
ATGCAAGAAAAGTTCAAGGCAGAGATATTAGCTCGCTACTTTTCCAGAGG
TCTTGGTGTCCTTACATTGGAAGTTCTGATCATCAAGCTCGGATTGTATC
TGATAAATGCCCGCCCAACGCCGTGGTTGGATGTCATTGCGTATAGAGGT
TACAAATTCGTCGGTGTCGTGCTCACAATGTCAACAGGGATACTTGTGCG
AAGATTATATTACCCTGTACTACTTTATTCGGCAACCGCAATGGGCATTT
TCCTTATGAGATCGCACAGGAGAATCATTCTGCCGCGAGATATGGATTCC
CATCAAGCTCATGATCTTGCGCGCCGTAATTTTTTCCTATTGTTTCTAAG
CGTACTGCAGTACCCAGTATATTGGGTTCTTGTTCTCGATCCAAGGCATT
AA

protein sequence of Gchil2892.t2

>Gchil2892.t2 ID=Gchil2892.t2|Name=Gchil2892.t2|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=284bp
MSQPQSSHADPLQNGMAFVFAGMQQMASGSAPAANVGAQLFQTLAPGAMG
YGNQLFGQGQERVSSFMKMPKYYFAVNHKYVLKKLILLLAPFRNRTWARQ
RGIDAAQFEVSGSDGATSYLPPRDDVNAPDLYIPVMSFLTYVLLVGFVFG
MQEKFKAEILARYFSRGLGVLTLEVLIIKLGLYLINARPTPWLDVIAYRG
YKFVGVVLTMSTGILVRRLYYPVLLYSATAMGIFLMRSHRRIILPRDMDS
HQAHDLARRNFFLLFLSVLQYPVYWVLVLDPRH*

mRNA from alignment at tig00000106_pilon:46258..47109+

Legend: start_codonpolypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gchil2892.t2 ID=Gchil2892.t2|Name=Gchil2892.t2|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=852bp|location=Sequence derived from alignment at tig00000106_pilon:46258..47109+ (Gracilaria chilensis NLEC103_M9 male)
ATGAGCCAGCCGCAATCATCCCATGCTGATCCCTTGCAAAACGGTATGGC
ATTTGTGTTTGCTGGAATGCAACAGATGGCCAGTGGAAGCGCACCAGCTG
CTAATGTTGGTGCTCAACTGTTTCAAACTTTAGCGCCAGGTGCTATGGGG
TACGGAAATCAGCTGTTCGGCCAAGGACAAGAGCGCGTCAGTAGCTTCAT
GAAGATGCCAAAGTATTACTTTGCTGTCAATCACAAGTACGTCTTGAAAA
AGCTCATACTACTGCTTGCCCCGTTTAGAAATCGAACTTGGGCAAGACAG
AGGGGGATTGACGCAGCACAATTTGAGGTGTCGGGCAGTGATGGTGCTAC
ATCATACCTTCCCCCTCGCGATGATGTCAATGCTCCAGATCTGTACATAC
CTGTGATGTCCTTCCTTACATACGTTCTCTTGGTCGGTTTTGTTTTTGGT
ATGCAAGAAAAGTTCAAGGCAGAGATATTAGCTCGCTACTTTTCCAGAGG
TCTTGGTGTCCTTACATTGGAAGTTCTGATCATCAAGCTCGGATTGTATC
TGATAAATGCCCGCCCAACGCCGTGGTTGGATGTCATTGCGTATAGAGGT
TACAAATTCGTCGGTGTCGTGCTCACAATGTCAACAGGGATACTTGTGCG
AAGATTATATTACCCTGTACTACTTTATTCGGCAACCGCAATGGGCATTT
TCCTTATGAGATCGCACAGGAGAATCATTCTGCCGCGAGATATGGATTCC
CATCAAGCTCATGATCTTGCGCGCCGTAATTTTTTCCTATTGTTTCTAAG
CGTACTGCAGTACCCAGTATATTGGGTTCTTGTTCTCGATCCAAGGCATT
AA

Coding sequence (CDS) from alignment at tig00000106_pilon:46258..47109+

>Gchil2892.t2 ID=Gchil2892.t2|Name=Gchil2892.t2|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=852bp|location=Sequence derived from alignment at tig00000106_pilon:46258..47109+ (Gracilaria chilensis NLEC103_M9 male)
ATGAGCCAGCCGCAATCATCCCATGCTGATCCCTTGCAAAACGGTATGGC
ATTTGTGTTTGCTGGAATGCAACAGATGGCCAGTGGAAGCGCACCAGCTG
CTAATGTTGGTGCTCAACTGTTTCAAACTTTAGCGCCAGGTGCTATGGGG
TACGGAAATCAGCTGTTCGGCCAAGGACAAGAGCGCGTCAGTAGCTTCAT
GAAGATGCCAAAGTATTACTTTGCTGTCAATCACAAGTACGTCTTGAAAA
AGCTCATACTACTGCTTGCCCCGTTTAGAAATCGAACTTGGGCAAGACAG
AGGGGGATTGACGCAGCACAATTTGAGGTGTCGGGCAGTGATGGTGCTAC
ATCATACCTTCCCCCTCGCGATGATGTCAATGCTCCAGATCTGTACATAC
CTGTGATGTCCTTCCTTACATACGTTCTCTTGGTCGGTTTTGTTTTTGGT
ATGCAAGAAAAGTTCAAGGCAGAGATATTAGCTCGCTACTTTTCCAGAGG
TCTTGGTGTCCTTACATTGGAAGTTCTGATCATCAAGCTCGGATTGTATC
TGATAAATGCCCGCCCAACGCCGTGGTTGGATGTCATTGCGTATAGAGGT
TACAAATTCGTCGGTGTCGTGCTCACAATGTCAACAGGGATACTTGTGCG
AAGATTATATTACCCTGTACTACTTTATTCGGCAACCGCAATGGGCATTT
TCCTTATGAGATCGCACAGGAGAATCATTCTGCCGCGAGATATGGATTCC
CATCAAGCTCATGATCTTGCGCGCCGTAATTTTTTCCTATTGTTTCTAAG
CGTACTGCAGTACCCAGTATATTGGGTTCTTGTTCTCGATCCAAGGCATT
AA