Gchil7580.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGchil7580.t1
Unique NameGchil7580.t1
TypemRNA
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length414
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000007_piloncontigtig00000007_pilon:2082509..2083750 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil7580Gchil7580Gracilaria chilensis NLEC103_M9 malegenetig00000007_pilon 2082509..2083750 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil7580.t1.stop1Gchil7580.t1.stop1Gracilaria chilensis NLEC103_M9 malestop_codontig00000007_pilon 2082509..2082511 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil7580.t1.CDS1Gchil7580.t1.CDS1Gracilaria chilensis NLEC103_M9 maleCDStig00000007_pilon 2082509..2083750 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil7580.t1.exon1Gchil7580.t1.exon1Gracilaria chilensis NLEC103_M9 maleexontig00000007_pilon 2082509..2083750 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil7580.t1.start1Gchil7580.t1.start1Gracilaria chilensis NLEC103_M9 malestart_codontig00000007_pilon 2083748..2083750 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil7580.t1Gchil7580.t1Gracilaria chilensis NLEC103_M9 malepolypeptidetig00000007_pilon 2082509..2083750 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gchil7580.t1 ID=Gchil7580.t1|Name=Gchil7580.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=414bp
MPSWYSEDELTLLRYTPMSPDFRTSYGECVLPLDLPPGTPRPYSPLNRRT
PCRSIPKPTIAFANYVTKSHVPQFVIPASPSDDRKPVVWLNTQHVFKLLR
NDSRLARATKYDRTIACFNLYPATLTDLQINHMIWTVAQKGEYDPAQGNL
LLQNNVLSLAMPQEFYDFLHDISEEELKCSMLEVLALIAEDEDSEGLSLM
KSELEPSIWKDLVEYMDNCVVKDQSRMDSKTKAGRKLMIAVESLLRFCYL
SPWKIDIYASYITPQELNSACKEMQRTVHSPQNELDSPRFSVDRRLVRSN
ARRPVASLCQTSRLIVSSHSNFSDRNRVFWKLFQDWRRYRKVLVQFLGLS
PAKAVRTLVDSISNGTQEDAWKRAETVLACWCTEGNLLSALPKEVVFNTL
APHVLYVSCSPKS*
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spliced messenger RNA

>Gchil7580.t1 ID=Gchil7580.t1|Name=Gchil7580.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1242bp|location=Sequence derived from alignment at tig00000007_pilon:2082509..2083750- (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCCGTCTTGGTATTCCGAGGATGAGCTCACCTTGTTGCGGTACACCCC
CATGTCCCCAGATTTTCGAACCAGCTACGGCGAATGCGTTCTACCGCTAG
ACCTACCACCGGGTACGCCACGGCCGTACTCCCCCCTTAACCGGCGAACT
CCATGTCGTTCTATTCCAAAGCCTACCATAGCCTTTGCTAACTACGTGAC
CAAAAGTCACGTCCCGCAATTTGTCATCCCAGCTTCACCCTCAGACGACC
GGAAACCTGTCGTATGGCTCAATACACAACATGTTTTCAAACTTCTTCGA
AACGACAGTCGTTTAGCGCGAGCTACAAAATATGACAGAACCATTGCTTG
TTTTAACTTGTATCCTGCGACACTCACTGATCTGCAAATCAATCACATGA
TTTGGACTGTAGCACAAAAAGGAGAATACGACCCGGCACAAGGCAATCTT
TTGTTGCAGAACAATGTGCTTTCATTGGCCATGCCTCAAGAGTTCTACGA
CTTTCTTCACGATATCAGTGAGGAGGAACTAAAATGCAGCATGTTGGAAG
TGCTCGCTTTAATCGCTGAAGATGAAGATTCAGAGGGATTATCTTTGATG
AAGTCGGAGTTGGAGCCTTCAATCTGGAAAGATCTTGTCGAATACATGGA
CAACTGCGTCGTTAAGGATCAAAGTAGAATGGACTCAAAGACCAAGGCTG
GCAGAAAACTTATGATTGCCGTCGAATCTTTATTGCGCTTCTGCTATCTC
TCACCGTGGAAAATTGATATCTATGCATCTTACATCACGCCACAAGAACT
TAACAGTGCATGCAAAGAAATGCAGAGGACAGTGCATTCACCCCAAAACG
AGTTGGATTCACCACGCTTTTCTGTCGATCGACGTCTTGTTCGCTCGAAT
GCACGAAGACCTGTAGCGTCTTTATGCCAAACGTCGCGATTAATCGTCTC
TTCCCATTCAAACTTCTCTGATCGAAACCGTGTGTTTTGGAAACTGTTTC
AAGATTGGCGAAGATATAGAAAAGTGTTAGTACAATTTCTTGGGCTCTCT
CCGGCTAAAGCTGTGCGTACTCTTGTCGATTCCATATCAAATGGAACACA
GGAAGACGCATGGAAACGAGCAGAAACGGTTTTGGCCTGCTGGTGCACGG
AAGGTAACTTGCTTTCAGCCCTCCCGAAAGAAGTTGTTTTCAATACCCTT
GCACCCCATGTACTGTATGTCAGCTGCAGCCCAAAGAGTTAG
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protein sequence of Gchil7580.t1

>Gchil7580.t1 ID=Gchil7580.t1|Name=Gchil7580.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=414bp
MPSWYSEDELTLLRYTPMSPDFRTSYGECVLPLDLPPGTPRPYSPLNRRT
PCRSIPKPTIAFANYVTKSHVPQFVIPASPSDDRKPVVWLNTQHVFKLLR
NDSRLARATKYDRTIACFNLYPATLTDLQINHMIWTVAQKGEYDPAQGNL
LLQNNVLSLAMPQEFYDFLHDISEEELKCSMLEVLALIAEDEDSEGLSLM
KSELEPSIWKDLVEYMDNCVVKDQSRMDSKTKAGRKLMIAVESLLRFCYL
SPWKIDIYASYITPQELNSACKEMQRTVHSPQNELDSPRFSVDRRLVRSN
ARRPVASLCQTSRLIVSSHSNFSDRNRVFWKLFQDWRRYRKVLVQFLGLS
PAKAVRTLVDSISNGTQEDAWKRAETVLACWCTEGNLLSALPKEVVFNTL
APHVLYVSCSPKS*
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mRNA from alignment at tig00000007_pilon:2082509..2083750-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gchil7580.t1 ID=Gchil7580.t1|Name=Gchil7580.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1242bp|location=Sequence derived from alignment at tig00000007_pilon:2082509..2083750- (Gracilaria chilensis NLEC103_M9 male)
ATGCCGTCTTGGTATTCCGAGGATGAGCTCACCTTGTTGCGGTACACCCC
CATGTCCCCAGATTTTCGAACCAGCTACGGCGAATGCGTTCTACCGCTAG
ACCTACCACCGGGTACGCCACGGCCGTACTCCCCCCTTAACCGGCGAACT
CCATGTCGTTCTATTCCAAAGCCTACCATAGCCTTTGCTAACTACGTGAC
CAAAAGTCACGTCCCGCAATTTGTCATCCCAGCTTCACCCTCAGACGACC
GGAAACCTGTCGTATGGCTCAATACACAACATGTTTTCAAACTTCTTCGA
AACGACAGTCGTTTAGCGCGAGCTACAAAATATGACAGAACCATTGCTTG
TTTTAACTTGTATCCTGCGACACTCACTGATCTGCAAATCAATCACATGA
TTTGGACTGTAGCACAAAAAGGAGAATACGACCCGGCACAAGGCAATCTT
TTGTTGCAGAACAATGTGCTTTCATTGGCCATGCCTCAAGAGTTCTACGA
CTTTCTTCACGATATCAGTGAGGAGGAACTAAAATGCAGCATGTTGGAAG
TGCTCGCTTTAATCGCTGAAGATGAAGATTCAGAGGGATTATCTTTGATG
AAGTCGGAGTTGGAGCCTTCAATCTGGAAAGATCTTGTCGAATACATGGA
CAACTGCGTCGTTAAGGATCAAAGTAGAATGGACTCAAAGACCAAGGCTG
GCAGAAAACTTATGATTGCCGTCGAATCTTTATTGCGCTTCTGCTATCTC
TCACCGTGGAAAATTGATATCTATGCATCTTACATCACGCCACAAGAACT
TAACAGTGCATGCAAAGAAATGCAGAGGACAGTGCATTCACCCCAAAACG
AGTTGGATTCACCACGCTTTTCTGTCGATCGACGTCTTGTTCGCTCGAAT
GCACGAAGACCTGTAGCGTCTTTATGCCAAACGTCGCGATTAATCGTCTC
TTCCCATTCAAACTTCTCTGATCGAAACCGTGTGTTTTGGAAACTGTTTC
AAGATTGGCGAAGATATAGAAAAGTGTTAGTACAATTTCTTGGGCTCTCT
CCGGCTAAAGCTGTGCGTACTCTTGTCGATTCCATATCAAATGGAACACA
GGAAGACGCATGGAAACGAGCAGAAACGGTTTTGGCCTGCTGGTGCACGG
AAGGTAACTTGCTTTCAGCCCTCCCGAAAGAAGTTGTTTTCAATACCCTT
GCACCCCATGTACTGTATGTCAGCTGCAGCCCAAAGAGTTAG
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Coding sequence (CDS) from alignment at tig00000007_pilon:2082509..2083750-

>Gchil7580.t1 ID=Gchil7580.t1|Name=Gchil7580.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=1242bp|location=Sequence derived from alignment at tig00000007_pilon:2082509..2083750- (Gracilaria chilensis NLEC103_M9 male)
ATGCCGTCTTGGTATTCCGAGGATGAGCTCACCTTGTTGCGGTACACCCC
CATGTCCCCAGATTTTCGAACCAGCTACGGCGAATGCGTTCTACCGCTAG
ACCTACCACCGGGTACGCCACGGCCGTACTCCCCCCTTAACCGGCGAACT
CCATGTCGTTCTATTCCAAAGCCTACCATAGCCTTTGCTAACTACGTGAC
CAAAAGTCACGTCCCGCAATTTGTCATCCCAGCTTCACCCTCAGACGACC
GGAAACCTGTCGTATGGCTCAATACACAACATGTTTTCAAACTTCTTCGA
AACGACAGTCGTTTAGCGCGAGCTACAAAATATGACAGAACCATTGCTTG
TTTTAACTTGTATCCTGCGACACTCACTGATCTGCAAATCAATCACATGA
TTTGGACTGTAGCACAAAAAGGAGAATACGACCCGGCACAAGGCAATCTT
TTGTTGCAGAACAATGTGCTTTCATTGGCCATGCCTCAAGAGTTCTACGA
CTTTCTTCACGATATCAGTGAGGAGGAACTAAAATGCAGCATGTTGGAAG
TGCTCGCTTTAATCGCTGAAGATGAAGATTCAGAGGGATTATCTTTGATG
AAGTCGGAGTTGGAGCCTTCAATCTGGAAAGATCTTGTCGAATACATGGA
CAACTGCGTCGTTAAGGATCAAAGTAGAATGGACTCAAAGACCAAGGCTG
GCAGAAAACTTATGATTGCCGTCGAATCTTTATTGCGCTTCTGCTATCTC
TCACCGTGGAAAATTGATATCTATGCATCTTACATCACGCCACAAGAACT
TAACAGTGCATGCAAAGAAATGCAGAGGACAGTGCATTCACCCCAAAACG
AGTTGGATTCACCACGCTTTTCTGTCGATCGACGTCTTGTTCGCTCGAAT
GCACGAAGACCTGTAGCGTCTTTATGCCAAACGTCGCGATTAATCGTCTC
TTCCCATTCAAACTTCTCTGATCGAAACCGTGTGTTTTGGAAACTGTTTC
AAGATTGGCGAAGATATAGAAAAGTGTTAGTACAATTTCTTGGGCTCTCT
CCGGCTAAAGCTGTGCGTACTCTTGTCGATTCCATATCAAATGGAACACA
GGAAGACGCATGGAAACGAGCAGAAACGGTTTTGGCCTGCTGGTGCACGG
AAGGTAACTTGCTTTCAGCCCTCCCGAAAGAAGTTGTTTTCAATACCCTT
GCACCCCATGTACTGTATGTCAGCTGCAGCCCAAAGAGTTAG
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