Gchil2895.t2 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGchil2895.t2
Unique NameGchil2895.t2
TypemRNA
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length550
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000106_piloncontigtig00000106_pilon:51924..53649 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog59463.ENSMLUP00000015058
Preferred nameCRNKL1
PFAMsHAT
Max annot lvl33208|Metazoa
KEGG koko:K12869
KEGG Pathwayko03040,map03040
KEGG ModuleM00355
GOsGO:0000245,GO:0000375,GO:0000377,GO:0000381,GO:0000398,GO:0000974,GO:0001655,GO:0001742,GO:0002009,GO:0003674,GO:0003676,GO:0003723,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005681,GO:0005684,GO:0005737,GO:0006139,GO:0006396,GO:0006397,GO:0006725,GO:0006807,GO:0006928,GO:0007272,GO:0007275,GO:0007399,GO:0007417,GO:0007420,GO:0007438,GO:0007442,GO:0007443,GO:0008150,GO:0008152,GO:0008347,GO:0008366,GO:0008380,GO:0009653,GO:0009719,GO:0009790,GO:0009888,GO:0009987,GO:0010033,GO:0010467,GO:0010468,GO:0016043,GO:0016070,GO:0016071,GO:0016477,GO:0016604,GO:0016607,GO:0019219,GO:0019222,GO:0021537,GO:0021543,GO:0021987,GO:0022008,GO:0022607,GO:0022613,GO:0022618,GO:0030154,GO:0030900,GO:0031323,GO:0031974,GO:0031981,GO:0032501,GO:0032502,GO:0032991,GO:0034097,GO:0034622,GO:0034641,GO:0035239,GO:0035295,GO:0040011,GO:0042063,GO:0042221,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0043484,GO:0043933,GO:0044085,GO:0044237,GO:0044238,GO:0044422,GO:0044424,GO:0044428,GO:0044446,GO:0044451,GO:0044464,GO:0046483,GO:0048024,GO:0048468,GO:0048513,GO:0048546,GO:0048565,GO:0048598,GO:0048619,GO:0048729,GO:0048731,GO:0048856,GO:0048869,GO:0048870,GO:0050684,GO:0050789,GO:0050794,GO:0050896,GO:0051171,GO:0051179,GO:0051252,GO:0051674,GO:0051716,GO:0055123,GO:0060255,GO:0060322,GO:0060429,GO:0060562,GO:0061326,GO:0061333,GO:0061525,GO:0065003,GO:0065007,GO:0070013,GO:0070848,GO:0070887,GO:0071007,GO:0071010,GO:0071011,GO:0071012,GO:0071013,GO:0071014,GO:0071310,GO:0071345,GO:0071363,GO:0071495,GO:0071704,GO:0071826,GO:0071840,GO:0072001,GO:0072002,GO:0080090,GO:0090304,GO:0097159,GO:1901360,GO:1901363,GO:1902494,GO:1903311,GO:1990089,GO:1990090,GO:1990416,GO:1990823,GO:1990830,GO:1990904
Evalue6.15e-72
EggNOG OGsKOG1915@1|root,KOG1915@2759|Eukaryota,38FN1@33154|Opisthokonta,3BEIY@33208|Metazoa,3CVXY@33213|Bilateria,48780@7711|Chordata,493Y2@7742|Vertebrata,3J9QT@40674|Mammalia,4M1US@9397|Chiroptera
DescriptionCrooked neck-like protein 1
COG categoryD
BRITEko00000,ko00001,ko00002,ko03036,ko03041
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil2895Gchil2895Gracilaria chilensis NLEC103_M9 malegenetig00000106_pilon 51924..53957 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil2895.t2Gchil2895.t2Gracilaria chilensis NLEC103_M9 malepolypeptidetig00000106_pilon 51924..53649 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil2895.t2.start1Gchil2895.t2.start1Gracilaria chilensis NLEC103_M9 malestart_codontig00000106_pilon 51924..51926 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil2895.t2.CDS1Gchil2895.t2.CDS1Gracilaria chilensis NLEC103_M9 maleCDStig00000106_pilon 51924..53522 +
Gchil2895.t2.CDS2Gchil2895.t2.CDS2Gracilaria chilensis NLEC103_M9 maleCDStig00000106_pilon 53599..53649 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil2895.t2.exon1Gchil2895.t2.exon1Gracilaria chilensis NLEC103_M9 maleexontig00000106_pilon 51924..53522 +
Gchil2895.t2.exon2Gchil2895.t2.exon2Gracilaria chilensis NLEC103_M9 maleexontig00000106_pilon 53599..53649 +


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil2895.t2.intron1Gchil2895.t2.intron1Gracilaria chilensis NLEC103_M9 maleintrontig00000106_pilon 53523..53598 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil2895.t2.stop1Gchil2895.t2.stop1Gracilaria chilensis NLEC103_M9 malestop_codontig00000106_pilon 53647..53649 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gchil2895.t2 ID=Gchil2895.t2|Name=Gchil2895.t2|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=550bp
MDQVPSHARAQNAIRVKSKAPATIQITAEQLLREAWERKEPAVPIPKQHI
ADAEELLEYQRNERKQYEMRIVRNRSHTSLWMRYAKWEEEQNEIVRARSI
WERAIDNDYRNPVIWLNYAEMEMRHRFINHARNIFDRAVALLPRVDQIWL
KYAHMEEMLGQLSQARLVYDRWMKWLPEATAYFAFIRFELRHGRSEKARM
VYELLINAHPTSHSYIKYAKFEERHEQLAHARHVYERGSERLPSTQITSG
FFLSFAKFEERRKQVKRARAIYLYATTKFSESESPGLHQAFTNFEKQHGD
REALDKLLSSKKRSKYEAALAENPTDYDTWFDLLQLEEFTSSTEHVRKTY
ERAVAHLPPVATKPSWSRYVYLWVSYAIWEELSCDDLQTSINVYKRCMAL
VPKRHRKFSFGKLWIYYAQAEIRNKNVQAARKIFGTGLGVLPHKHVLYES
YIDFEMCLGEFERVREIYENWLTRNPTHEPGFLSFADFELRLGEFERGRL
VLEIATSVDELKSSLGLWKKLADVVKLEDETSATCMLQMKLYDESMNEV*
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spliced messenger RNA

>Gchil2895.t2 ID=Gchil2895.t2|Name=Gchil2895.t2|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1650bp|location=Sequence derived from alignment at tig00000106_pilon:51924..53649+ (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGACCAAGTTCCATCCCACGCACGAGCTCAAAATGCAATTCGAGTAAA
AAGCAAGGCTCCGGCCACAATTCAGATTACAGCCGAGCAGCTTCTTCGAG
AAGCTTGGGAACGCAAAGAGCCAGCCGTTCCGATCCCGAAACAGCACATC
GCCGACGCCGAAGAGCTTCTCGAATATCAAAGAAATGAGCGAAAGCAGTA
TGAAATGCGAATTGTTCGCAATCGCTCACATACTTCTCTTTGGATGCGCT
ACGCAAAGTGGGAGGAAGAACAAAACGAGATCGTGCGCGCACGTTCCATC
TGGGAGCGAGCTATTGACAACGACTACCGCAACCCCGTGATATGGCTTAA
TTATGCTGAAATGGAAATGCGACACCGCTTTATCAATCATGCAAGAAATA
TATTTGACAGAGCTGTTGCTCTGTTACCCAGAGTGGACCAAATCTGGCTC
AAGTATGCTCATATGGAAGAAATGCTTGGACAACTCAGCCAGGCCCGATT
GGTATACGACCGTTGGATGAAATGGCTTCCCGAAGCCACCGCGTACTTCG
CGTTTATTCGCTTTGAGCTCCGTCATGGTCGTAGCGAAAAGGCTAGAATG
GTGTATGAATTACTTATAAATGCGCATCCGACCTCGCATTCTTACATCAA
ATACGCAAAGTTTGAGGAACGCCATGAGCAATTGGCGCATGCTCGTCATG
TATATGAGCGCGGATCTGAACGACTGCCGTCTACGCAAATAACATCAGGG
TTTTTTCTCTCCTTTGCAAAGTTTGAGGAACGTCGAAAACAGGTAAAACG
GGCCAGAGCCATCTACCTGTACGCGACTACAAAGTTTTCTGAGTCCGAAT
CTCCTGGGTTGCATCAAGCTTTCACCAACTTTGAAAAACAGCATGGAGAT
CGAGAGGCTCTAGACAAATTATTATCGTCGAAGAAGAGAAGCAAGTATGA
GGCTGCCCTGGCCGAAAATCCCACTGATTATGATACATGGTTTGACCTTC
TTCAATTAGAGGAGTTCACCTCATCCACTGAACATGTTCGGAAAACATAT
GAACGGGCTGTTGCACACTTACCCCCCGTTGCTACAAAGCCTTCATGGAG
TCGATACGTTTACCTTTGGGTTTCGTATGCGATTTGGGAAGAGCTCTCTT
GCGATGACTTGCAAACATCTATCAACGTGTACAAAAGATGTATGGCCTTA
GTACCCAAGCGCCATCGGAAGTTTTCATTTGGGAAACTTTGGATTTACTA
CGCGCAAGCCGAAATACGGAACAAGAATGTACAAGCAGCTCGCAAGATCT
TTGGCACAGGTCTTGGTGTACTTCCTCACAAGCATGTTTTATATGAATCA
TACATTGATTTCGAGATGTGTCTTGGAGAGTTCGAGCGTGTTCGAGAGAT
ATATGAGAACTGGCTCACAAGAAATCCAACCCACGAGCCTGGATTTCTCT
CGTTTGCAGACTTCGAACTAAGGCTCGGCGAATTTGAGAGAGGCAGATTG
GTGCTAGAAATTGCAACTTCAGTTGATGAACTGAAATCCTCGTTAGGACT
ATGGAAAAAACTCGCAGATGTTGTGAAACTCGAAGATGAAACTTCAGCTA
CCTGTATGCTGCAGATGAAGCTATACGACGAGTCTATGAACGAAGTGTAG
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protein sequence of Gchil2895.t2

>Gchil2895.t2 ID=Gchil2895.t2|Name=Gchil2895.t2|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=550bp
MDQVPSHARAQNAIRVKSKAPATIQITAEQLLREAWERKEPAVPIPKQHI
ADAEELLEYQRNERKQYEMRIVRNRSHTSLWMRYAKWEEEQNEIVRARSI
WERAIDNDYRNPVIWLNYAEMEMRHRFINHARNIFDRAVALLPRVDQIWL
KYAHMEEMLGQLSQARLVYDRWMKWLPEATAYFAFIRFELRHGRSEKARM
VYELLINAHPTSHSYIKYAKFEERHEQLAHARHVYERGSERLPSTQITSG
FFLSFAKFEERRKQVKRARAIYLYATTKFSESESPGLHQAFTNFEKQHGD
REALDKLLSSKKRSKYEAALAENPTDYDTWFDLLQLEEFTSSTEHVRKTY
ERAVAHLPPVATKPSWSRYVYLWVSYAIWEELSCDDLQTSINVYKRCMAL
VPKRHRKFSFGKLWIYYAQAEIRNKNVQAARKIFGTGLGVLPHKHVLYES
YIDFEMCLGEFERVREIYENWLTRNPTHEPGFLSFADFELRLGEFERGRL
VLEIATSVDELKSSLGLWKKLADVVKLEDETSATCMLQMKLYDESMNEV*
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mRNA from alignment at tig00000106_pilon:51924..53649+

Legend: polypeptidestart_codonCDSexonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gchil2895.t2 ID=Gchil2895.t2|Name=Gchil2895.t2|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1726bp|location=Sequence derived from alignment at tig00000106_pilon:51924..53649+ (Gracilaria chilensis NLEC103_M9 male)
ATGGACCAAGTTCCATCCCACGCACGAGCTCAAAATGCAATTCGAGTAAA
AAGCAAGGCTCCGGCCACAATTCAGATTACAGCCGAGCAGCTTCTTCGAG
AAGCTTGGGAACGCAAAGAGCCAGCCGTTCCGATCCCGAAACAGCACATC
GCCGACGCCGAAGAGCTTCTCGAATATCAAAGAAATGAGCGAAAGCAGTA
TGAAATGCGAATTGTTCGCAATCGCTCACATACTTCTCTTTGGATGCGCT
ACGCAAAGTGGGAGGAAGAACAAAACGAGATCGTGCGCGCACGTTCCATC
TGGGAGCGAGCTATTGACAACGACTACCGCAACCCCGTGATATGGCTTAA
TTATGCTGAAATGGAAATGCGACACCGCTTTATCAATCATGCAAGAAATA
TATTTGACAGAGCTGTTGCTCTGTTACCCAGAGTGGACCAAATCTGGCTC
AAGTATGCTCATATGGAAGAAATGCTTGGACAACTCAGCCAGGCCCGATT
GGTATACGACCGTTGGATGAAATGGCTTCCCGAAGCCACCGCGTACTTCG
CGTTTATTCGCTTTGAGCTCCGTCATGGTCGTAGCGAAAAGGCTAGAATG
GTGTATGAATTACTTATAAATGCGCATCCGACCTCGCATTCTTACATCAA
ATACGCAAAGTTTGAGGAACGCCATGAGCAATTGGCGCATGCTCGTCATG
TATATGAGCGCGGATCTGAACGACTGCCGTCTACGCAAATAACATCAGGG
TTTTTTCTCTCCTTTGCAAAGTTTGAGGAACGTCGAAAACAGGTAAAACG
GGCCAGAGCCATCTACCTGTACGCGACTACAAAGTTTTCTGAGTCCGAAT
CTCCTGGGTTGCATCAAGCTTTCACCAACTTTGAAAAACAGCATGGAGAT
CGAGAGGCTCTAGACAAATTATTATCGTCGAAGAAGAGAAGCAAGTATGA
GGCTGCCCTGGCCGAAAATCCCACTGATTATGATACATGGTTTGACCTTC
TTCAATTAGAGGAGTTCACCTCATCCACTGAACATGTTCGGAAAACATAT
GAACGGGCTGTTGCACACTTACCCCCCGTTGCTACAAAGCCTTCATGGAG
TCGATACGTTTACCTTTGGGTTTCGTATGCGATTTGGGAAGAGCTCTCTT
GCGATGACTTGCAAACATCTATCAACGTGTACAAAAGATGTATGGCCTTA
GTACCCAAGCGCCATCGGAAGTTTTCATTTGGGAAACTTTGGATTTACTA
CGCGCAAGCCGAAATACGGAACAAGAATGTACAAGCAGCTCGCAAGATCT
TTGGCACAGGTCTTGGTGTACTTCCTCACAAGCATGTTTTATATGAATCA
TACATTGATTTCGAGATGTGTCTTGGAGAGTTCGAGCGTGTTCGAGAGAT
ATATGAGAACTGGCTCACAAGAAATCCAACCCACGAGCCTGGATTTCTCT
CGTTTGCAGACTTCGAACTAAGGCTCGGCGAATTTGAGAGAGGCAGATTG
GTGCTAGAAATTGCAACTTCAGTTGATGAACTGAAATCCTCGTTAGGACT
ATGGAAAAAACTCGCAGATGTTGTGAAACTCGAAGATGAAACTTCAGCTG
TTCGTCGTTTTGAAGGCTACGTTATCAGCCAAGCTCACGAAGCTGTCTGG
CTTGCATATATCTACTTAATGAAAGACCTGTATGCTGCAGATGAAGCTAT
ACGACGAGTCTATGAACGAAGTGTAG
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Coding sequence (CDS) from alignment at tig00000106_pilon:51924..53649+

>Gchil2895.t2 ID=Gchil2895.t2|Name=Gchil2895.t2|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=1650bp|location=Sequence derived from alignment at tig00000106_pilon:51924..53649+ (Gracilaria chilensis NLEC103_M9 male)
ATGGACCAAGTTCCATCCCACGCACGAGCTCAAAATGCAATTCGAGTAAA
AAGCAAGGCTCCGGCCACAATTCAGATTACAGCCGAGCAGCTTCTTCGAG
AAGCTTGGGAACGCAAAGAGCCAGCCGTTCCGATCCCGAAACAGCACATC
GCCGACGCCGAAGAGCTTCTCGAATATCAAAGAAATGAGCGAAAGCAGTA
TGAAATGCGAATTGTTCGCAATCGCTCACATACTTCTCTTTGGATGCGCT
ACGCAAAGTGGGAGGAAGAACAAAACGAGATCGTGCGCGCACGTTCCATC
TGGGAGCGAGCTATTGACAACGACTACCGCAACCCCGTGATATGGCTTAA
TTATGCTGAAATGGAAATGCGACACCGCTTTATCAATCATGCAAGAAATA
TATTTGACAGAGCTGTTGCTCTGTTACCCAGAGTGGACCAAATCTGGCTC
AAGTATGCTCATATGGAAGAAATGCTTGGACAACTCAGCCAGGCCCGATT
GGTATACGACCGTTGGATGAAATGGCTTCCCGAAGCCACCGCGTACTTCG
CGTTTATTCGCTTTGAGCTCCGTCATGGTCGTAGCGAAAAGGCTAGAATG
GTGTATGAATTACTTATAAATGCGCATCCGACCTCGCATTCTTACATCAA
ATACGCAAAGTTTGAGGAACGCCATGAGCAATTGGCGCATGCTCGTCATG
TATATGAGCGCGGATCTGAACGACTGCCGTCTACGCAAATAACATCAGGG
TTTTTTCTCTCCTTTGCAAAGTTTGAGGAACGTCGAAAACAGGTAAAACG
GGCCAGAGCCATCTACCTGTACGCGACTACAAAGTTTTCTGAGTCCGAAT
CTCCTGGGTTGCATCAAGCTTTCACCAACTTTGAAAAACAGCATGGAGAT
CGAGAGGCTCTAGACAAATTATTATCGTCGAAGAAGAGAAGCAAGTATGA
GGCTGCCCTGGCCGAAAATCCCACTGATTATGATACATGGTTTGACCTTC
TTCAATTAGAGGAGTTCACCTCATCCACTGAACATGTTCGGAAAACATAT
GAACGGGCTGTTGCACACTTACCCCCCGTTGCTACAAAGCCTTCATGGAG
TCGATACGTTTACCTTTGGGTTTCGTATGCGATTTGGGAAGAGCTCTCTT
GCGATGACTTGCAAACATCTATCAACGTGTACAAAAGATGTATGGCCTTA
GTACCCAAGCGCCATCGGAAGTTTTCATTTGGGAAACTTTGGATTTACTA
CGCGCAAGCCGAAATACGGAACAAGAATGTACAAGCAGCTCGCAAGATCT
TTGGCACAGGTCTTGGTGTACTTCCTCACAAGCATGTTTTATATGAATCA
TACATTGATTTCGAGATGTGTCTTGGAGAGTTCGAGCGTGTTCGAGAGAT
ATATGAGAACTGGCTCACAAGAAATCCAACCCACGAGCCTGGATTTCTCT
CGTTTGCAGACTTCGAACTAAGGCTCGGCGAATTTGAGAGAGGCAGATTG
GTGCTAGAAATTGCAACTTCAGTTGATGAACTGAAATCCTCGTTAGGACT
ATGGAAAAAACTCGCAGATGTTGTGAAACTCGAAGATGAAACTTCAGCTA
CCTGTATGCTGCAGATGAAGCTATACGACGAGTCTATGAACGAAGTGTAG
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