Gchil7389.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gchil7389.t1
Unique Name	Gchil7389.t1
Type	mRNA
Organism	Gracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length	636

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
tig00000007_pilon	contig	tig00000007_pilon:832830..835479 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria chilensis NLEC103_M9 male OGS1.0	2022-05-09

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gchil7389	Gchil7389	Gracilaria chilensis NLEC103_M9 male	gene	tig00000007_pilon 832830..835479 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil7389.t1	Gchil7389.t1	Gracilaria chilensis NLEC103_M9 male	polypeptide	tig00000007_pilon 832830..835479 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil7389.t1.start1	Gchil7389.t1.start1	Gracilaria chilensis NLEC103_M9 male	start_codon	tig00000007_pilon 832830..832832 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil7389.t1.CDS1	Gchil7389.t1.CDS1	Gracilaria chilensis NLEC103_M9 male	CDS	tig00000007_pilon 832830..833804 +
Gchil7389.t1.CDS2	Gchil7389.t1.CDS2	Gracilaria chilensis NLEC103_M9 male	CDS	tig00000007_pilon 834547..835479 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil7389.t1.exon1	Gchil7389.t1.exon1	Gracilaria chilensis NLEC103_M9 male	exon	tig00000007_pilon 832830..833804 +
Gchil7389.t1.exon2	Gchil7389.t1.exon2	Gracilaria chilensis NLEC103_M9 male	exon	tig00000007_pilon 834547..835479 +

The following intron feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil7389.t1.intron1	Gchil7389.t1.intron1	Gracilaria chilensis NLEC103_M9 male	intron	tig00000007_pilon 833805..834546 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil7389.t1.stop1	Gchil7389.t1.stop1	Gracilaria chilensis NLEC103_M9 male	stop_codon	tig00000007_pilon 835477..835479 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at tig00000007_pilon:832830..835479+
coding sequence from alignment at tig00000007_pilon:832830..835479+

mRNA sequence

>Gchil7389.t1 ID=Gchil7389.t1|Name=Gchil7389.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=636bp
MMVLTKLLLTGATTLVLLATLVLRARGVPLVDGKLSISLSDLTDGLFTSV
SQYVPHSSCALLSAEYTRILHTTQGMRMPHSTMMVDGMRCGQLPPNATDE
QLYTDSYMQLVPIDALRDEDSARAQNAYNVFYELMVQSRPIPRSFLQFMQ
RERAERALQTYVGLERFAARECGNGREMVQLARGTVVFFGSVGGKNVSIS
ALIDGVAGGRDVYLPPQSPYHVSFSARAAAAEGVCALKLDWRNRASSTAN
KDDDDDDDKDDDKGGNARMCFPAAATVVMAKSGARRRMEALRVGDVVRAR
SHGGGDLNSAVFALSHADGATHTTMSGSARAQALGDDNESLHAYIAATHQ
TLFAQFSALVFGDATVAKAAFRGALAVQGRAELSHFDIGADQTCDVTRPT
LLVRGALVARAGALHGGHAVVGARSRLHHSVQRTCSQRVEAYDAVHTAAH
LDFDAARRAVLRETAELCVAHSSGHVTLRNDTLLLTPRSRARSVSCYALF
HVRAADLRLARRWRLLSPRDDDDDQDDDDQDDDDQDDDDQQRWGGRSAFR
NVVLVVSGMRAELRDVRMRAFNARRTLLVFCAVYGTLDMYNVKLRASVLA
PTASLTAMDSVVNGSLVVGGLRGSLAALHAAYATC*

spliced messenger RNA

>Gchil7389.t1 ID=Gchil7389.t1|Name=Gchil7389.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1908bp|location=Sequence derived from alignment at tig00000007_pilon:832830..835479+ (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGATGGTACTAACAAAGCTGTTGCTGACGGGTGCGACAACGCTGGTGCT
GCTCGCGACGCTGGTGCTGCGCGCACGCGGCGTGCCGCTGGTCGACGGCA
AACTGTCCATCTCGCTGAGCGACCTCACAGACGGGCTGTTCACATCGGTG
TCTCAGTACGTACCGCACAGCAGCTGCGCTTTGTTATCGGCCGAATACAC
ACGCATACTACACACGACGCAGGGCATGCGCATGCCGCACTCCACCATGA
TGGTGGACGGCATGCGGTGCGGACAACTTCCGCCAAACGCTACGGACGAG
CAATTGTACACCGACTCGTACATGCAACTGGTACCGATCGATGCGCTGCG
CGACGAGGACAGCGCGCGCGCTCAAAATGCATACAATGTGTTCTACGAGT
TGATGGTGCAGAGTCGACCGATTCCACGCTCGTTTCTACAATTCATGCAG
CGTGAGCGCGCGGAACGGGCGTTGCAGACGTATGTGGGATTGGAACGGTT
CGCGGCGCGTGAGTGCGGTAACGGACGTGAGATGGTGCAACTGGCTCGTG
GCACAGTGGTGTTCTTCGGGTCGGTGGGCGGCAAGAACGTCAGCATCAGC
GCGTTGATCGATGGTGTGGCGGGCGGACGCGACGTGTATCTGCCGCCGCA
GAGCCCGTATCACGTGTCGTTCTcggcgagggcggcggcggcggaggGCG
TGTGCGCGCTCAAGCTGGATTGGCGCAACCGAGCCAGCAGCacggcgaac
aaggacgacgacgacgacgacgacaaggacgatgacAAGGGAGGCAACGC
GCGCATGTGCTTCCCAGCAGCGGCGACGGTGGTAATGGCGAAAAGCGGTG
CACGCAGACGCATGGAGGCGTTGCGCGTGGGCGACGTAGTACGCGCGCGC
TCGCACGGTGGCGGCGACCTCAACAGCGCAGTGTTTGCGTTAAGCCACGC
GGACGGTGCAACACACACAACAATGAGCGGCAGCGCGCGCGCACAAGCGC
TGGGCGACGACAACGAGTCGCTGCACGCGTACATCGCGGCCACACACCAG
ACGCTGTTCGCGCAGTTCAGCGCGCTGGTGTTCGGCGACGCCACGGTGGC
CAAGGCTGCGTTCCGCGGCGCGCTCGCCGTGCAGGGGCGCGCCGAACTCT
CGCACTTTGACATTGGCGCCGACCAAACGTGCGACGTCACCCGTCCCACG
CTGCTTGTGCGCGGCGCGCTGGTCGCGCGCGCCGGCGCCCTACACGGCGG
ACACGCCGTCGTCGGTGCGCGCTCTCGTTTGCATCACAGCGTGCAACGCA
CGTGTTCCCAACGCGTCGAAGCTTACGATGCCGTGCATACCGCCGCACAT
TTGGACTTTGACGCCGCGCGTCGCGCCGTGCTGCGCGAGACGGCCGAACT
GTGCGTGGCTCACAGTAGCGGCCACGTCACGTTGCGCAACGATACCTTGT
TGCTCACGCCGCGCTCGCGCGCCCGCTCCGTGTCGTGTTATGCGCTCTTT
CATGTGCGCGCCGCCGATCTGCGTCTGGCGCGCCGGTGGCGGCTGCTGTC
GCCGCGcgacgacgacgacgaccaagacgacgacgaccaagacgacgacg
accaagacgacgacgacCAACAACGGTGGGGCGGAAGGAGCGCGTTTCGT
AACGTGGTGCTGGTGGTGTCTGGAATGCGCGCGGAGCTACGCGACGTTCG
CATGCGCGCTTTCAACGCGCGTCGCACCCTGTTGGTGTTCTGCGCCGTGT
ACGGCACGCTGGACATGTACAACGTCAAGCTGCGCGCGTCGGTGCTGGCG
CCCACGGCGTCGCTCACCGCCATGGACTCGGTGGTGAACGGCTCGCTCGT
TGTGGGCGGCCTGCGCGGCTCGCTGGCCGCTCTGCACGCTGCGTACGCCA
CGTGCTAG

protein sequence of Gchil7389.t1

>Gchil7389.t1 ID=Gchil7389.t1|Name=Gchil7389.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=636bp
MMVLTKLLLTGATTLVLLATLVLRARGVPLVDGKLSISLSDLTDGLFTSV
SQYVPHSSCALLSAEYTRILHTTQGMRMPHSTMMVDGMRCGQLPPNATDE
QLYTDSYMQLVPIDALRDEDSARAQNAYNVFYELMVQSRPIPRSFLQFMQ
RERAERALQTYVGLERFAARECGNGREMVQLARGTVVFFGSVGGKNVSIS
ALIDGVAGGRDVYLPPQSPYHVSFSARAAAAEGVCALKLDWRNRASSTAN
KDDDDDDDKDDDKGGNARMCFPAAATVVMAKSGARRRMEALRVGDVVRAR
SHGGGDLNSAVFALSHADGATHTTMSGSARAQALGDDNESLHAYIAATHQ
TLFAQFSALVFGDATVAKAAFRGALAVQGRAELSHFDIGADQTCDVTRPT
LLVRGALVARAGALHGGHAVVGARSRLHHSVQRTCSQRVEAYDAVHTAAH
LDFDAARRAVLRETAELCVAHSSGHVTLRNDTLLLTPRSRARSVSCYALF
HVRAADLRLARRWRLLSPRDDDDDQDDDDQDDDDQDDDDQQRWGGRSAFR
NVVLVVSGMRAELRDVRMRAFNARRTLLVFCAVYGTLDMYNVKLRASVLA
PTASLTAMDSVVNGSLVVGGLRGSLAALHAAYATC*

mRNA from alignment at tig00000007_pilon:832830..835479+

Legend: polypeptidestart_codonCDSexonintronstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gchil7389.t1 ID=Gchil7389.t1|Name=Gchil7389.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=2650bp|location=Sequence derived from alignment at tig00000007_pilon:832830..835479+ (Gracilaria chilensis NLEC103_M9 male)
ATGATGGTACTAACAAAGCTGTTGCTGACGGGTGCGACAACGCTGGTGCT
GCTCGCGACGCTGGTGCTGCGCGCACGCGGCGTGCCGCTGGTCGACGGCA
AACTGTCCATCTCGCTGAGCGACCTCACAGACGGGCTGTTCACATCGGTG
TCTCAGTACGTACCGCACAGCAGCTGCGCTTTGTTATCGGCCGAATACAC
ACGCATACTACACACGACGCAGGGCATGCGCATGCCGCACTCCACCATGA
TGGTGGACGGCATGCGGTGCGGACAACTTCCGCCAAACGCTACGGACGAG
CAATTGTACACCGACTCGTACATGCAACTGGTACCGATCGATGCGCTGCG
CGACGAGGACAGCGCGCGCGCTCAAAATGCATACAATGTGTTCTACGAGT
TGATGGTGCAGAGTCGACCGATTCCACGCTCGTTTCTACAATTCATGCAG
CGTGAGCGCGCGGAACGGGCGTTGCAGACGTATGTGGGATTGGAACGGTT
CGCGGCGCGTGAGTGCGGTAACGGACGTGAGATGGTGCAACTGGCTCGTG
GCACAGTGGTGTTCTTCGGGTCGGTGGGCGGCAAGAACGTCAGCATCAGC
GCGTTGATCGATGGTGTGGCGGGCGGACGCGACGTGTATCTGCCGCCGCA
GAGCCCGTATCACGTGTCGTTCTcggcgagggcggcggcggcggaggGCG
TGTGCGCGCTCAAGCTGGATTGGCGCAACCGAGCCAGCAGCacggcgaac
aaggacgacgacgacgacgacgacaaggacgatgacAAGGGAGGCAACGC
GCGCATGTGCTTCCCAGCAGCGGCGACGGTGGTAATGGCGAAAAGCGGTG
CACGCAGACGCATGGAGGCGTTGCGCGTGGGCGACGTAGTACGCGCGCGC
TCGCACGGTGGCGGCGACCTCAACAGCGCAGTGTTTGCGTTAAGCCACGC
GGACGGTGCAACACACACAACAATGGTACGTGTGAAGACGCACAATAACG
AAACGGTGACGCTGTCCAGCGGGCATCTGGTGGCGACGGGGTGCGAAACG
TGTTTGCTACGCGCAGCGGGTGAACTGCGTATTGGCGACGACGTGCTGAC
GGCGCGCGGAATAAGCACGGTGAGAGGCGTGTGGACGGTGCGTGGGGTGC
GAGGACTGTATAACCCACACACGATGAGCGGGTTTGTTGAGGTGGATGGG
GTGGTGGCGTCGTGTTACACGACGGCGGTGGAGGCGGTGGGGGCGCACGC
GGCGTTGGCGGCGTTGCGCGCGGCGTTTGTGGTGGGCGGTGCGTGGGACG
GGGTGCGACGCGCGCTGACGTACGCGCTTCCAACGGCGGCGGCGCGCCTG
GGCGGAGTGCTCTCGGGGGTGGCGTCGTCGTCGTGACGGCGTGGTTGCGA
TGCTGCAATCTCAGGTGGAGAAGGTGGTGTGCTTTGAATGAAAAGTGAAT
TTGGGTGAATTGCGTGGCGAGTGCTCGCCCTCCTTGGTTAAAAAGTGCTC
GACGGCGGGGGCGGCAAGCGTGCGCGCGCCctcgcactctctcactctct
cactgcaccatcgctctctctctctcgctctctctTGCACAATGCGCATG
CCGCGCGCAACACCAcgacgacgagcgcgacggcagcgcgcgccggcgac
ggcATTCTCAGCgctgctgctgctgccgctgctgctgctgctgctgctgc
tgcagctgTCGATGCAGAGCGGCAGCGCGCGCGCACAAGCGCTGGGCGAC
GACAACGAGTCGCTGCACGCGTACATCGCGGCCACACACCAGACGCTGTT
CGCGCAGTTCAGCGCGCTGGTGTTCGGCGACGCCACGGTGGCCAAGGCTG
CGTTCCGCGGCGCGCTCGCCGTGCAGGGGCGCGCCGAACTCTCGCACTTT
GACATTGGCGCCGACCAAACGTGCGACGTCACCCGTCCCACGCTGCTTGT
GCGCGGCGCGCTGGTCGCGCGCGCCGGCGCCCTACACGGCGGACACGCCG
TCGTCGGTGCGCGCTCTCGTTTGCATCACAGCGTGCAACGCACGTGTTCC
CAACGCGTCGAAGCTTACGATGCCGTGCATACCGCCGCACATTTGGACTT
TGACGCCGCGCGTCGCGCCGTGCTGCGCGAGACGGCCGAACTGTGCGTGG
CTCACAGTAGCGGCCACGTCACGTTGCGCAACGATACCTTGTTGCTCACG
CCGCGCTCGCGCGCCCGCTCCGTGTCGTGTTATGCGCTCTTTCATGTGCG
CGCCGCCGATCTGCGTCTGGCGCGCCGGTGGCGGCTGCTGTCGCCGCGcg
acgacgacgacgaccaagacgacgacgaccaagacgacgacgaccaagac
gacgacgacCAACAACGGTGGGGCGGAAGGAGCGCGTTTCGTAACGTGGT
GCTGGTGGTGTCTGGAATGCGCGCGGAGCTACGCGACGTTCGCATGCGCG
CTTTCAACGCGCGTCGCACCCTGTTGGTGTTCTGCGCCGTGTACGGCACG
CTGGACATGTACAACGTCAAGCTGCGCGCGTCGGTGCTGGCGCCCACGGC
GTCGCTCACCGCCATGGACTCGGTGGTGAACGGCTCGCTCGTTGTGGGCG
GCCTGCGCGGCTCGCTGGCCGCTCTGCACGCTGCGTACGCCACGTGCTAG

Coding sequence (CDS) from alignment at tig00000007_pilon:832830..835479+

>Gchil7389.t1 ID=Gchil7389.t1|Name=Gchil7389.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=1908bp|location=Sequence derived from alignment at tig00000007_pilon:832830..835479+ (Gracilaria chilensis NLEC103_M9 male)
ATGATGGTACTAACAAAGCTGTTGCTGACGGGTGCGACAACGCTGGTGCT
GCTCGCGACGCTGGTGCTGCGCGCACGCGGCGTGCCGCTGGTCGACGGCA
AACTGTCCATCTCGCTGAGCGACCTCACAGACGGGCTGTTCACATCGGTG
TCTCAGTACGTACCGCACAGCAGCTGCGCTTTGTTATCGGCCGAATACAC
ACGCATACTACACACGACGCAGGGCATGCGCATGCCGCACTCCACCATGA
TGGTGGACGGCATGCGGTGCGGACAACTTCCGCCAAACGCTACGGACGAG
CAATTGTACACCGACTCGTACATGCAACTGGTACCGATCGATGCGCTGCG
CGACGAGGACAGCGCGCGCGCTCAAAATGCATACAATGTGTTCTACGAGT
TGATGGTGCAGAGTCGACCGATTCCACGCTCGTTTCTACAATTCATGCAG
CGTGAGCGCGCGGAACGGGCGTTGCAGACGTATGTGGGATTGGAACGGTT
CGCGGCGCGTGAGTGCGGTAACGGACGTGAGATGGTGCAACTGGCTCGTG
GCACAGTGGTGTTCTTCGGGTCGGTGGGCGGCAAGAACGTCAGCATCAGC
GCGTTGATCGATGGTGTGGCGGGCGGACGCGACGTGTATCTGCCGCCGCA
GAGCCCGTATCACGTGTCGTTCTcggcgagggcggcggcggcggaggGCG
TGTGCGCGCTCAAGCTGGATTGGCGCAACCGAGCCAGCAGCacggcgaac
aaggacgacgacgacgacgacgacaaggacgatgacAAGGGAGGCAACGC
GCGCATGTGCTTCCCAGCAGCGGCGACGGTGGTAATGGCGAAAAGCGGTG
CACGCAGACGCATGGAGGCGTTGCGCGTGGGCGACGTAGTACGCGCGCGC
TCGCACGGTGGCGGCGACCTCAACAGCGCAGTGTTTGCGTTAAGCCACGC
GGACGGTGCAACACACACAACAATGAGCGGCAGCGCGCGCGCACAAGCGC
TGGGCGACGACAACGAGTCGCTGCACGCGTACATCGCGGCCACACACCAG
ACGCTGTTCGCGCAGTTCAGCGCGCTGGTGTTCGGCGACGCCACGGTGGC
CAAGGCTGCGTTCCGCGGCGCGCTCGCCGTGCAGGGGCGCGCCGAACTCT
CGCACTTTGACATTGGCGCCGACCAAACGTGCGACGTCACCCGTCCCACG
CTGCTTGTGCGCGGCGCGCTGGTCGCGCGCGCCGGCGCCCTACACGGCGG
ACACGCCGTCGTCGGTGCGCGCTCTCGTTTGCATCACAGCGTGCAACGCA
CGTGTTCCCAACGCGTCGAAGCTTACGATGCCGTGCATACCGCCGCACAT
TTGGACTTTGACGCCGCGCGTCGCGCCGTGCTGCGCGAGACGGCCGAACT
GTGCGTGGCTCACAGTAGCGGCCACGTCACGTTGCGCAACGATACCTTGT
TGCTCACGCCGCGCTCGCGCGCCCGCTCCGTGTCGTGTTATGCGCTCTTT
CATGTGCGCGCCGCCGATCTGCGTCTGGCGCGCCGGTGGCGGCTGCTGTC
GCCGCGcgacgacgacgacgaccaagacgacgacgaccaagacgacgacg
accaagacgacgacgacCAACAACGGTGGGGCGGAAGGAGCGCGTTTCGT
AACGTGGTGCTGGTGGTGTCTGGAATGCGCGCGGAGCTACGCGACGTTCG
CATGCGCGCTTTCAACGCGCGTCGCACCCTGTTGGTGTTCTGCGCCGTGT
ACGGCACGCTGGACATGTACAACGTCAAGCTGCGCGCGTCGGTGCTGGCG
CCCACGGCGTCGCTCACCGCCATGGACTCGGTGGTGAACGGCTCGCTCGT
TGTGGGCGGCCTGCGCGGCTCGCTGGCCGCTCTGCACGCTGCGTACGCCA
CGTGCTAG