Gchil3079.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGchil3079.t1
Unique NameGchil3079.t1
TypemRNA
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length210
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000106_piloncontigtig00000106_pilon:1773409..1774038 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog8083.ENSXMAP00000003606
Preferred nameMATN4
PFAMsEGF_CA,FXa_inhibition,Matrilin_ccoil,VWA,cEGF
Max annot lvl33208|Metazoa
KEGG koko:K06825,ko:K17307
GOsGO:0005575,GO:0005576,GO:0006950,GO:0008150,GO:0009611,GO:0009987,GO:0016043,GO:0030198,GO:0043062,GO:0048678,GO:0050896,GO:0071840
Evalue3.38e-05
EggNOG OGsKOG1217@1|root,KOG1217@2759|Eukaryota,38BUP@33154|Opisthokonta,3BA2W@33208|Metazoa,3CUNH@33213|Bilateria,4832D@7711|Chordata,48VDS@7742|Vertebrata,49Q0H@7898|Actinopterygii
DescriptionMatrilin 4
COG categoryT
BRITEko00000,ko00536,ko04147,ko04516
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil3079Gchil3079Gracilaria chilensis NLEC103_M9 malegenetig00000106_pilon 1773409..1774038 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil3079.t1.stop1Gchil3079.t1.stop1Gracilaria chilensis NLEC103_M9 malestop_codontig00000106_pilon 1773409..1773411 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil3079.t1.CDS1Gchil3079.t1.CDS1Gracilaria chilensis NLEC103_M9 maleCDStig00000106_pilon 1773409..1774038 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil3079.t1.exon1Gchil3079.t1.exon1Gracilaria chilensis NLEC103_M9 maleexontig00000106_pilon 1773409..1774038 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil3079.t1.start1Gchil3079.t1.start1Gracilaria chilensis NLEC103_M9 malestart_codontig00000106_pilon 1774036..1774038 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil3079.t1Gchil3079.t1Gracilaria chilensis NLEC103_M9 malepolypeptidetig00000106_pilon 1773409..1774038 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gchil3079.t1 ID=Gchil3079.t1|Name=Gchil3079.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=210bp
MRTAVLFLIVYAFLVPHISADNRSQTISKLTAANVNICFALDGSSSISPS
WYRTQKSVVNQVVNAIPHGNKMGLAAAQYGISVTTISPFTVDHDKFLSSL
RSSVQLESNRKFVTAGLNYCISELSESHASRNLIVLFGDGNSSVGRDPGH
RSAFFFRRGGVVFAVGVGESQNITELMNIAGNDSRRFFSINANYSDGDAS
ADLSKLLFF*
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spliced messenger RNA

>Gchil3079.t1 ID=Gchil3079.t1|Name=Gchil3079.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=630bp|location=Sequence derived from alignment at tig00000106_pilon:1773409..1774038- (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGAGGACCGCTGTACTATTTCTTATCGTCTACGCATTCCTTGTGCCTCA
TATCTCGGCCGACAACCGAAGCCAAACAATCTCTAAACTTACAGCGGCCA
ATGTCAATATATGCTTTGCTTTGGATGGGAGCTCCTCCATTTCTCCTTCG
TGGTACAGGACTCAAAAAAGTGTGGTCAATCAAGTCGTCAATGCGATCCC
ACACGGCAACAAAATGGGACTAGCGGCTGCGCAATATGGAATCTCTGTGA
CAACTATCAGTCCGTTTACTGTGGATCACGACAAATTTCTTTCTAGCTTG
CGATCTTCTGTGCAGTTGGAATCAAATCGCAAATTTGTTACCGCTGGGCT
AAACTATTGTATCAGTGAACTCTCCGAGAGCCATGCAAGTCGAAATCTCA
TCGTGCTGTTTGGCGACGGCAATAGTAGCGTGGGTCGCGATCCAGGTCAT
CGATCTGCGTTCTTCTTCAGACGTGGAGGTGTGGTTTTTGCCGTTGGCGT
AGGAGAATCTCAGAACATTACAGAATTGATGAACATAGCTGGCAACGACT
CACGAAGATTTTTCAGTATTAACGCCAACTATTCCGATGGTGACGCATCT
GCTGACCTCTCGAAGTTACTGTTTTTTTGA
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protein sequence of Gchil3079.t1

>Gchil3079.t1 ID=Gchil3079.t1|Name=Gchil3079.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=210bp
MRTAVLFLIVYAFLVPHISADNRSQTISKLTAANVNICFALDGSSSISPS
WYRTQKSVVNQVVNAIPHGNKMGLAAAQYGISVTTISPFTVDHDKFLSSL
RSSVQLESNRKFVTAGLNYCISELSESHASRNLIVLFGDGNSSVGRDPGH
RSAFFFRRGGVVFAVGVGESQNITELMNIAGNDSRRFFSINANYSDGDAS
ADLSKLLFF*
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mRNA from alignment at tig00000106_pilon:1773409..1774038-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gchil3079.t1 ID=Gchil3079.t1|Name=Gchil3079.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=630bp|location=Sequence derived from alignment at tig00000106_pilon:1773409..1774038- (Gracilaria chilensis NLEC103_M9 male)
ATGAGGACCGCTGTACTATTTCTTATCGTCTACGCATTCCTTGTGCCTCA
TATCTCGGCCGACAACCGAAGCCAAACAATCTCTAAACTTACAGCGGCCA
ATGTCAATATATGCTTTGCTTTGGATGGGAGCTCCTCCATTTCTCCTTCG
TGGTACAGGACTCAAAAAAGTGTGGTCAATCAAGTCGTCAATGCGATCCC
ACACGGCAACAAAATGGGACTAGCGGCTGCGCAATATGGAATCTCTGTGA
CAACTATCAGTCCGTTTACTGTGGATCACGACAAATTTCTTTCTAGCTTG
CGATCTTCTGTGCAGTTGGAATCAAATCGCAAATTTGTTACCGCTGGGCT
AAACTATTGTATCAGTGAACTCTCCGAGAGCCATGCAAGTCGAAATCTCA
TCGTGCTGTTTGGCGACGGCAATAGTAGCGTGGGTCGCGATCCAGGTCAT
CGATCTGCGTTCTTCTTCAGACGTGGAGGTGTGGTTTTTGCCGTTGGCGT
AGGAGAATCTCAGAACATTACAGAATTGATGAACATAGCTGGCAACGACT
CACGAAGATTTTTCAGTATTAACGCCAACTATTCCGATGGTGACGCATCT
GCTGACCTCTCGAAGTTACTGTTTTTTTGA
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Coding sequence (CDS) from alignment at tig00000106_pilon:1773409..1774038-

>Gchil3079.t1 ID=Gchil3079.t1|Name=Gchil3079.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=630bp|location=Sequence derived from alignment at tig00000106_pilon:1773409..1774038- (Gracilaria chilensis NLEC103_M9 male)
ATGAGGACCGCTGTACTATTTCTTATCGTCTACGCATTCCTTGTGCCTCA
TATCTCGGCCGACAACCGAAGCCAAACAATCTCTAAACTTACAGCGGCCA
ATGTCAATATATGCTTTGCTTTGGATGGGAGCTCCTCCATTTCTCCTTCG
TGGTACAGGACTCAAAAAAGTGTGGTCAATCAAGTCGTCAATGCGATCCC
ACACGGCAACAAAATGGGACTAGCGGCTGCGCAATATGGAATCTCTGTGA
CAACTATCAGTCCGTTTACTGTGGATCACGACAAATTTCTTTCTAGCTTG
CGATCTTCTGTGCAGTTGGAATCAAATCGCAAATTTGTTACCGCTGGGCT
AAACTATTGTATCAGTGAACTCTCCGAGAGCCATGCAAGTCGAAATCTCA
TCGTGCTGTTTGGCGACGGCAATAGTAGCGTGGGTCGCGATCCAGGTCAT
CGATCTGCGTTCTTCTTCAGACGTGGAGGTGTGGTTTTTGCCGTTGGCGT
AGGAGAATCTCAGAACATTACAGAATTGATGAACATAGCTGGCAACGACT
CACGAAGATTTTTCAGTATTAACGCCAACTATTCCGATGGTGACGCATCT
GCTGACCTCTCGAAGTTACTGTTTTTTTGA
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