Gchil3021.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGchil3021.t1
Unique NameGchil3021.t1
TypemRNA
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length348
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000106_piloncontigtig00000106_pilon:1083720..1084763 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog296587.XP_002505882.1
PFAMsTauD
Max annot lvl33090|Viridiplantae
GOsGO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044424,GO:0044464
Evalue5.56e-74
EggNOG OGs28JFJ@1|root,2QRUR@2759|Eukaryota,37IIG@33090|Viridiplantae
DescriptionClavaminate synthase-like protein
COG categoryS
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil3021Gchil3021Gracilaria chilensis NLEC103_M9 malegenetig00000106_pilon 1083720..1084763 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil3021.t1.start1Gchil3021.t1.start1Gracilaria chilensis NLEC103_M9 malestart_codontig00000106_pilon 1083720..1083722 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil3021.t1.CDS1Gchil3021.t1.CDS1Gracilaria chilensis NLEC103_M9 maleCDStig00000106_pilon 1083720..1084763 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil3021.t1.exon1Gchil3021.t1.exon1Gracilaria chilensis NLEC103_M9 maleexontig00000106_pilon 1083720..1084763 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil3021.t1.stop1Gchil3021.t1.stop1Gracilaria chilensis NLEC103_M9 malestop_codontig00000106_pilon 1084761..1084763 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil3021.t1Gchil3021.t1Gracilaria chilensis NLEC103_M9 malepolypeptidetig00000106_pilon 1083720..1084763 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gchil3021.t1 ID=Gchil3021.t1|Name=Gchil3021.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=348bp
MKDTTEAFEHPVLAEAKVYDGKHFPLFVTPPFSAPELRTSPEAVIDYLRE
NREHVLNLLQSHAVLYFRDFAAQCSTPETFAKIVEESLRLPNFPYELGNA
VRSPVVGDRVFTANESPPEKPIPFHHELAQTPKYPSKLLFYCERAADTGG
ETPVLLSRAVCKDLQMEHPDFLQMLEQHGVTYSRVMTPHDRPHSAIGRGW
RRTFGVQTRIEAERVLSNRGYSFEWLEDGEDSPLREVSPVLPAVVETENG
KSFFNQIAAVWGGWKDEFNKPEDCIRAGDGSVLDRCCMDALVDIMGRHRV
AIPWKRGDFMLIDNIQAQHSRATFTGRRRVLASLASGGSVLVENIGI*
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spliced messenger RNA

>Gchil3021.t1 ID=Gchil3021.t1|Name=Gchil3021.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1044bp|location=Sequence derived from alignment at tig00000106_pilon:1083720..1084763+ (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGAAAGATACCACGGAGGCCTTCGAACATCCTGTGCTTGCTGAAGCGAA
AGTCTACGACGGTAAACACTTTCCTCTTTTCGTCACTCCTCCCTTTTCTG
CACCCGAGTTACGGACATCACCGGAAGCTGTGATCGATTATCTTCGGGAA
AATCGCGAGCATGTCTTGAATCTGCTTCAAAGTCATGCAGTTCTATACTT
TCGTGACTTTGCAGCGCAATGTTCTACTCCCGAAACGTTTGCAAAGATTG
TAGAAGAAAGTCTGAGGTTACCAAACTTTCCTTATGAACTTGGGAATGCG
GTTCGCTCGCCCGTAGTTGGGGATCGTGTATTCACTGCAAATGAATCACC
ACCGGAAAAACCAATACCATTTCATCACGAACTCGCCCAAACTCCCAAGT
ACCCATCGAAATTATTATTCTACTGCGAACGCGCAGCGGACACTGGCGGT
GAGACACCTGTGTTGCTTTCAAGAGCCGTGTGCAAGGATCTGCAAATGGA
ACATCCAGACTTTCTTCAGATGTTGGAGCAACACGGCGTGACGTACTCCC
GTGTAATGACCCCCCACGACAGGCCACATTCTGCAATTGGGCGAGGTTGG
CGACGCACCTTTGGCGTGCAGACTCGCATCGAGGCAGAAAGAGTCCTTTC
AAATAGGGGCTATAGCTTTGAGTGGCTTGAAGACGGAGAAGATAGTCCAT
TAAGAGAAGTAAGTCCTGTTTTGCCAGCAGTCGTTGAGACTGAAAACGGA
AAGAGCTTCTTCAACCAGATTGCTGCTGTATGGGGGGGTTGGAAAGATGA
ATTTAACAAACCTGAAGATTGTATAAGAGCCGGAGATGGGTCAGTTCTTG
ACCGGTGCTGTATGGATGCACTTGTTGACATCATGGGCAGACATCGCGTG
GCCATACCGTGGAAAAGGGGCGATTTTATGTTAATTGATAACATACAAGC
ACAGCACAGTCGTGCTACCTTCACTGGAAGGCGTCGGGTTCTGGCATCTC
TAGCTAGTGGCGGCTCAGTCTTAGTAGAGAACATTGGCATTTGA
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protein sequence of Gchil3021.t1

>Gchil3021.t1 ID=Gchil3021.t1|Name=Gchil3021.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=348bp
MKDTTEAFEHPVLAEAKVYDGKHFPLFVTPPFSAPELRTSPEAVIDYLRE
NREHVLNLLQSHAVLYFRDFAAQCSTPETFAKIVEESLRLPNFPYELGNA
VRSPVVGDRVFTANESPPEKPIPFHHELAQTPKYPSKLLFYCERAADTGG
ETPVLLSRAVCKDLQMEHPDFLQMLEQHGVTYSRVMTPHDRPHSAIGRGW
RRTFGVQTRIEAERVLSNRGYSFEWLEDGEDSPLREVSPVLPAVVETENG
KSFFNQIAAVWGGWKDEFNKPEDCIRAGDGSVLDRCCMDALVDIMGRHRV
AIPWKRGDFMLIDNIQAQHSRATFTGRRRVLASLASGGSVLVENIGI*
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mRNA from alignment at tig00000106_pilon:1083720..1084763+

Legend: start_codonpolypeptideCDSexonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gchil3021.t1 ID=Gchil3021.t1|Name=Gchil3021.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1044bp|location=Sequence derived from alignment at tig00000106_pilon:1083720..1084763+ (Gracilaria chilensis NLEC103_M9 male)
ATGAAAGATACCACGGAGGCCTTCGAACATCCTGTGCTTGCTGAAGCGAA
AGTCTACGACGGTAAACACTTTCCTCTTTTCGTCACTCCTCCCTTTTCTG
CACCCGAGTTACGGACATCACCGGAAGCTGTGATCGATTATCTTCGGGAA
AATCGCGAGCATGTCTTGAATCTGCTTCAAAGTCATGCAGTTCTATACTT
TCGTGACTTTGCAGCGCAATGTTCTACTCCCGAAACGTTTGCAAAGATTG
TAGAAGAAAGTCTGAGGTTACCAAACTTTCCTTATGAACTTGGGAATGCG
GTTCGCTCGCCCGTAGTTGGGGATCGTGTATTCACTGCAAATGAATCACC
ACCGGAAAAACCAATACCATTTCATCACGAACTCGCCCAAACTCCCAAGT
ACCCATCGAAATTATTATTCTACTGCGAACGCGCAGCGGACACTGGCGGT
GAGACACCTGTGTTGCTTTCAAGAGCCGTGTGCAAGGATCTGCAAATGGA
ACATCCAGACTTTCTTCAGATGTTGGAGCAACACGGCGTGACGTACTCCC
GTGTAATGACCCCCCACGACAGGCCACATTCTGCAATTGGGCGAGGTTGG
CGACGCACCTTTGGCGTGCAGACTCGCATCGAGGCAGAAAGAGTCCTTTC
AAATAGGGGCTATAGCTTTGAGTGGCTTGAAGACGGAGAAGATAGTCCAT
TAAGAGAAGTAAGTCCTGTTTTGCCAGCAGTCGTTGAGACTGAAAACGGA
AAGAGCTTCTTCAACCAGATTGCTGCTGTATGGGGGGGTTGGAAAGATGA
ATTTAACAAACCTGAAGATTGTATAAGAGCCGGAGATGGGTCAGTTCTTG
ACCGGTGCTGTATGGATGCACTTGTTGACATCATGGGCAGACATCGCGTG
GCCATACCGTGGAAAAGGGGCGATTTTATGTTAATTGATAACATACAAGC
ACAGCACAGTCGTGCTACCTTCACTGGAAGGCGTCGGGTTCTGGCATCTC
TAGCTAGTGGCGGCTCAGTCTTAGTAGAGAACATTGGCATTTGA
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Coding sequence (CDS) from alignment at tig00000106_pilon:1083720..1084763+

>Gchil3021.t1 ID=Gchil3021.t1|Name=Gchil3021.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=1044bp|location=Sequence derived from alignment at tig00000106_pilon:1083720..1084763+ (Gracilaria chilensis NLEC103_M9 male)
ATGAAAGATACCACGGAGGCCTTCGAACATCCTGTGCTTGCTGAAGCGAA
AGTCTACGACGGTAAACACTTTCCTCTTTTCGTCACTCCTCCCTTTTCTG
CACCCGAGTTACGGACATCACCGGAAGCTGTGATCGATTATCTTCGGGAA
AATCGCGAGCATGTCTTGAATCTGCTTCAAAGTCATGCAGTTCTATACTT
TCGTGACTTTGCAGCGCAATGTTCTACTCCCGAAACGTTTGCAAAGATTG
TAGAAGAAAGTCTGAGGTTACCAAACTTTCCTTATGAACTTGGGAATGCG
GTTCGCTCGCCCGTAGTTGGGGATCGTGTATTCACTGCAAATGAATCACC
ACCGGAAAAACCAATACCATTTCATCACGAACTCGCCCAAACTCCCAAGT
ACCCATCGAAATTATTATTCTACTGCGAACGCGCAGCGGACACTGGCGGT
GAGACACCTGTGTTGCTTTCAAGAGCCGTGTGCAAGGATCTGCAAATGGA
ACATCCAGACTTTCTTCAGATGTTGGAGCAACACGGCGTGACGTACTCCC
GTGTAATGACCCCCCACGACAGGCCACATTCTGCAATTGGGCGAGGTTGG
CGACGCACCTTTGGCGTGCAGACTCGCATCGAGGCAGAAAGAGTCCTTTC
AAATAGGGGCTATAGCTTTGAGTGGCTTGAAGACGGAGAAGATAGTCCAT
TAAGAGAAGTAAGTCCTGTTTTGCCAGCAGTCGTTGAGACTGAAAACGGA
AAGAGCTTCTTCAACCAGATTGCTGCTGTATGGGGGGGTTGGAAAGATGA
ATTTAACAAACCTGAAGATTGTATAAGAGCCGGAGATGGGTCAGTTCTTG
ACCGGTGCTGTATGGATGCACTTGTTGACATCATGGGCAGACATCGCGTG
GCCATACCGTGGAAAAGGGGCGATTTTATGTTAATTGATAACATACAAGC
ACAGCACAGTCGTGCTACCTTCACTGGAAGGCGTCGGGTTCTGGCATCTC
TAGCTAGTGGCGGCTCAGTCTTAGTAGAGAACATTGGCATTTGA
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