Gchil3067.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGchil3067.t1
Unique NameGchil3067.t1
TypemRNA
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length252
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000106_piloncontigtig00000106_pilon:1629196..1629951 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog665571.STHERM_c17440
Preferred namegph
PFAMsHAD_2
Max annot lvl203691|Spirochaetes
KEGG rclassRC00017
KEGG koko:K01091
KEGG ReactionR01334
KEGG Pathwayko00630,ko01100,ko01110,ko01130,map00630,map01100,map01110,map01130
Evalue2.08e-26
EggNOG OGsCOG0546@1|root,COG0546@2|Bacteria,2J7K0@203691|Spirochaetes
EC3.1.3.18
DescriptionPhosphoglycolate phosphatase
COG categoryS
BRITEko00000,ko00001,ko01000
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil3067Gchil3067Gracilaria chilensis NLEC103_M9 malegenetig00000106_pilon 1629196..1629951 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil3067.t1.stop1Gchil3067.t1.stop1Gracilaria chilensis NLEC103_M9 malestop_codontig00000106_pilon 1629196..1629198 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil3067.t1.CDS1Gchil3067.t1.CDS1Gracilaria chilensis NLEC103_M9 maleCDStig00000106_pilon 1629196..1629951 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil3067.t1.exon1Gchil3067.t1.exon1Gracilaria chilensis NLEC103_M9 maleexontig00000106_pilon 1629196..1629951 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil3067.t1.start1Gchil3067.t1.start1Gracilaria chilensis NLEC103_M9 malestart_codontig00000106_pilon 1629949..1629951 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil3067.t1Gchil3067.t1Gracilaria chilensis NLEC103_M9 malepolypeptidetig00000106_pilon 1629196..1629951 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gchil3067.t1 ID=Gchil3067.t1|Name=Gchil3067.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=252bp
MTSTLRPIGGVLFDLDGTLVNSLPDITDAVNAALQADGLDAACESAVRAA
AGHGATRLLHSLLSAAQGGVSPTAAQLQRARLAKLRFETERSKHAATRVR
AVAFDGVSLMLQQLSAAQLPLAVLSNGDERVVRATVAHALSRARFVTVAG
ARDDAPLKPAAEAACRVLDAHQVFGALPRAAVAMVGDTDVDMRTAVAAGL
TPVAVTWGFRDEATLRAAGARHVVHTPAQLAHLLLRSTTVDSVNQSKRVP
M*
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spliced messenger RNA

>Gchil3067.t1 ID=Gchil3067.t1|Name=Gchil3067.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=756bp|location=Sequence derived from alignment at tig00000106_pilon:1629196..1629951- (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGACGTCAACGTTGCGCCCCATCGGCGGCGTGCTGTTCGACCTGGACGG
CACGTTGGTGAACTCGTTGCCAGACATCACGGACGCCGTCAACGCGGCGC
TGCAAGCCGACGGCCTCGACGCGGCGTGCGAGAGCGCCGTGCGCGCCGCC
GCAGGCCACGGCGCTACTCGTCTTCTTCACTCGTTGCTGAGCGCGGCGCA
GGGCGGCGTGTCGCCCACGGCGGCGCAGTTGCAGCGCGCGCGCCTCGCAA
AGCTGCGCTTCGAGACGGAGCGTAGCAAGCACGCGGCCACTCGCGTGCGC
GCCGTCGCCTTCGACGGCGTGTCGCTCATGCTGCAGCAGCTGAGCGCCGC
GCAGCTGCCGCTTGCCGTGTTGTCCAACGGCGACGAGCGCGTGGTACGCG
CCACCGTCGCACACGCGCTGTCGCGCGCGCGCTTTGTGACCGTGGCGGGC
GCGCGAGACGACGCGCCGCTCAAACCGGCCGCCGAGGCTGCGTGTCGCGT
GCTTGACGCGCATCAAGTGTTTGGCGCACTGCCGCGCGCCGCCGTCGCCA
TGGTGGGCGATACCGACGTCGACATGCGCACGGCCGTGGCGGCCGGGCTC
ACGCCCGTCGCCGTCACCTGGGGCTTTCGCGACGAGGCCACGCTTCGCGC
CGCCGGCGCGCGTCACGTCGTGCACACGCCCGCTCAGCTTGCGCACTTGT
TGTTGCGTTCAACGACGGTTGACAGCGTAAATCAATCAAAGCGCGTGCCG
ATGTAG
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protein sequence of Gchil3067.t1

>Gchil3067.t1 ID=Gchil3067.t1|Name=Gchil3067.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=252bp
MTSTLRPIGGVLFDLDGTLVNSLPDITDAVNAALQADGLDAACESAVRAA
AGHGATRLLHSLLSAAQGGVSPTAAQLQRARLAKLRFETERSKHAATRVR
AVAFDGVSLMLQQLSAAQLPLAVLSNGDERVVRATVAHALSRARFVTVAG
ARDDAPLKPAAEAACRVLDAHQVFGALPRAAVAMVGDTDVDMRTAVAAGL
TPVAVTWGFRDEATLRAAGARHVVHTPAQLAHLLLRSTTVDSVNQSKRVP
M*
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mRNA from alignment at tig00000106_pilon:1629196..1629951-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gchil3067.t1 ID=Gchil3067.t1|Name=Gchil3067.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=756bp|location=Sequence derived from alignment at tig00000106_pilon:1629196..1629951- (Gracilaria chilensis NLEC103_M9 male)
ATGACGTCAACGTTGCGCCCCATCGGCGGCGTGCTGTTCGACCTGGACGG
CACGTTGGTGAACTCGTTGCCAGACATCACGGACGCCGTCAACGCGGCGC
TGCAAGCCGACGGCCTCGACGCGGCGTGCGAGAGCGCCGTGCGCGCCGCC
GCAGGCCACGGCGCTACTCGTCTTCTTCACTCGTTGCTGAGCGCGGCGCA
GGGCGGCGTGTCGCCCACGGCGGCGCAGTTGCAGCGCGCGCGCCTCGCAA
AGCTGCGCTTCGAGACGGAGCGTAGCAAGCACGCGGCCACTCGCGTGCGC
GCCGTCGCCTTCGACGGCGTGTCGCTCATGCTGCAGCAGCTGAGCGCCGC
GCAGCTGCCGCTTGCCGTGTTGTCCAACGGCGACGAGCGCGTGGTACGCG
CCACCGTCGCACACGCGCTGTCGCGCGCGCGCTTTGTGACCGTGGCGGGC
GCGCGAGACGACGCGCCGCTCAAACCGGCCGCCGAGGCTGCGTGTCGCGT
GCTTGACGCGCATCAAGTGTTTGGCGCACTGCCGCGCGCCGCCGTCGCCA
TGGTGGGCGATACCGACGTCGACATGCGCACGGCCGTGGCGGCCGGGCTC
ACGCCCGTCGCCGTCACCTGGGGCTTTCGCGACGAGGCCACGCTTCGCGC
CGCCGGCGCGCGTCACGTCGTGCACACGCCCGCTCAGCTTGCGCACTTGT
TGTTGCGTTCAACGACGGTTGACAGCGTAAATCAATCAAAGCGCGTGCCG
ATGTAG
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Coding sequence (CDS) from alignment at tig00000106_pilon:1629196..1629951-

>Gchil3067.t1 ID=Gchil3067.t1|Name=Gchil3067.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=756bp|location=Sequence derived from alignment at tig00000106_pilon:1629196..1629951- (Gracilaria chilensis NLEC103_M9 male)
ATGACGTCAACGTTGCGCCCCATCGGCGGCGTGCTGTTCGACCTGGACGG
CACGTTGGTGAACTCGTTGCCAGACATCACGGACGCCGTCAACGCGGCGC
TGCAAGCCGACGGCCTCGACGCGGCGTGCGAGAGCGCCGTGCGCGCCGCC
GCAGGCCACGGCGCTACTCGTCTTCTTCACTCGTTGCTGAGCGCGGCGCA
GGGCGGCGTGTCGCCCACGGCGGCGCAGTTGCAGCGCGCGCGCCTCGCAA
AGCTGCGCTTCGAGACGGAGCGTAGCAAGCACGCGGCCACTCGCGTGCGC
GCCGTCGCCTTCGACGGCGTGTCGCTCATGCTGCAGCAGCTGAGCGCCGC
GCAGCTGCCGCTTGCCGTGTTGTCCAACGGCGACGAGCGCGTGGTACGCG
CCACCGTCGCACACGCGCTGTCGCGCGCGCGCTTTGTGACCGTGGCGGGC
GCGCGAGACGACGCGCCGCTCAAACCGGCCGCCGAGGCTGCGTGTCGCGT
GCTTGACGCGCATCAAGTGTTTGGCGCACTGCCGCGCGCCGCCGTCGCCA
TGGTGGGCGATACCGACGTCGACATGCGCACGGCCGTGGCGGCCGGGCTC
ACGCCCGTCGCCGTCACCTGGGGCTTTCGCGACGAGGCCACGCTTCGCGC
CGCCGGCGCGCGTCACGTCGTGCACACGCCCGCTCAGCTTGCGCACTTGT
TGTTGCGTTCAACGACGGTTGACAGCGTAAATCAATCAAAGCGCGTGCCG
ATGTAG
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