Gchil2963.t1 (polypeptide) Gracilaria chilensis NLEC103_M9 male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NameGchil2963.t1
Unique NameGchil2963.t1
Typepolypeptide
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length243
Homology
[Close]
BLAST of Gchil2963.t1 vs. uniprot
Match: A0A2V3IR00_9FLOR (Small ubiquitin-related modifier 3-like n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3IR00_9FLOR)

HSP 1 Score: 220 bits (560), Expect = 1.470e-68
Identity = 135/248 (54.44%), Postives = 169/248 (68.15%), Query Frame = 0 
Query:    1 MLDDPDSDTELLCHSGGSKIVSYYDRLTNNANIDDNFDDDEDDNFDVLAFASKPPKKRPRGRTPKKGSQPPHKKLAT---EDKTVFEISDDD-EVVVVATSEK-LDKEDIEAKLAAQRARNLLAESTKDNSDMDEAIRVQEEARLEREAAVKR-KQDAERTALEKRQRSKPEGIIFKARHGNQIKKVRMRTTDPLRKLLPRFCTDFGLDLKKVYMEFDGEEVGPEETPESIELEQDMIVDLYVRGSRR 242
            MLDDPDSDTELL   GG+K+VSYY +L    N D          FD+LA +    +KR RGR PK  S PP KK AT     KTVF+ISDD+ +V +    EK LD +D EA LAAQRAR++LA S K+N+ +++AIR +            R K+ +E+  L  RQ    +G++FKARHG+ +KKVRMRTTDP+ KLLP+FC DFGLD+KKVYMEFDGEEVG  +TP S+E+EQD IVD+YVRGSRR
Sbjct:    1 MLDDPDSDTELLAQDGGAKMVSYYSKL----NDDXXXXXXXXXXFDMLAVSLASSRKRSRGRPPKIKSLPPSKKPATAARRSKTVFDISDDEHQVRITKVHEKELDAKDKEASLAAQRARHVLASSMKENALVEQAIRREXXXXXXXXXXXXRIKEQSEKAQLIARQNKPQQGVVFKARHGDNVKKVRMRTTDPVTKLLPKFCKDFGLDVKKVYMEFDGEEVGANDTPASLEIEQDEIVDVYVRGSRR 244
[Close]
BLAST of Gchil2963.t1 vs. uniprot
Match: R7QIH4_CHOCR (Rad60-SLD domain-containing protein n=1 Tax=Chondrus crispus TaxID=2769 RepID=R7QIH4_CHOCR)

HSP 1 Score: 63.5 bits (153), Expect = 2.670e-8
Identity = 29/72 (40.28%), Postives = 46/72 (63.89%), Query Frame = 0 
Query:  168 IIFKARHGNQIKKVRMRTTDPLRKLLPRFCTDFGLDLKKVYMEFDGEEVGPEETPESIELEQDMIVDLYVRG 239
            +  K R G    K+R+R +DP+ K+L  FC  F L+L    M+FDGE+V   +TP+++ELE+ M++D+  R 
Sbjct:  205 VQLKVRSGQNQIKMRIRRSDPVLKMLGPFCKKFDLNLPNAVMQFDGEQVEESDTPDTLELEEGMLIDVITRS 276
The following BLAST results are available for this feature:
BLAST of Gchil2963.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A2V3IR00_9FLOR1.470e-6854.44Small ubiquitin-related modifier 3-like n=1 Tax=Gr... [more]
R7QIH4_CHOCR2.670e-840.28Rad60-SLD domain-containing protein n=1 Tax=Chondr... [more]
back to top
InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 135..155
NoneNo IPR availableGENE3D3.10.20.90coord: 120..239
e-value: 4.3E-14
score: 54.7
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 45..80
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 55..69
NoneNo IPR availableCDDcd01763Ubl_SUMO_likecoord: 168..236
e-value: 1.30578E-10
score: 54.1233
IPR022617Rad60/SUMO-like domainPFAMPF11976Rad60-SLDcoord: 179..237
e-value: 7.2E-8
score: 32.1
IPR029071Ubiquitin-like domain superfamilySUPERFAMILY54236Ubiquitin-likecoord: 169..238

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000106_piloncontigtig00000106_pilon:514082..514810 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-06-01
Diamond blastp: OGS1.0 vs UniRef902022-06-02
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil2963.t1Gchil2963.t1Gracilaria chilensis NLEC103_M9 malemRNAtig00000106_pilon 514082..514810 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Gchil2963.t1 ID=Gchil2963.t1|Name=Gchil2963.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=243bp
MLDDPDSDTELLCHSGGSKIVSYYDRLTNNANIDDNFDDDEDDNFDVLAF
ASKPPKKRPRGRTPKKGSQPPHKKLATEDKTVFEISDDDEVVVVATSEKL
DKEDIEAKLAAQRARNLLAESTKDNSDMDEAIRVQEEARLEREAAVKRKQ
DAERTALEKRQRSKPEGIIFKARHGNQIKKVRMRTTDPLRKLLPRFCTDF
GLDLKKVYMEFDGEEVGPEETPESIELEQDMIVDLYVRGSRR*
back to top
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR022617Rad60/SUMO-like_dom
IPR029071Ubiquitin-like_domsf