Gchil8702.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGchil8702.t1
Unique NameGchil8702.t1
TypemRNA
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length237
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000088_piloncontigtig00000088_pilon:1354609..1355319 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog1333998.M2A_3185
Preferred nameomp28
PFAMsSIMPL
Max annot lvl28211|Alphaproteobacteria
KEGG koko:K09807
GOsGO:0005575,GO:0005623,GO:0042597,GO:0044464
Evalue3.58e-43
EggNOG OGsCOG2968@1|root,COG2968@2|Bacteria,1RH7T@1224|Proteobacteria,2U981@28211|Alphaproteobacteria,4BS7M@82117|unclassified Alphaproteobacteria
DescriptionProtein of unknown function (DUF541)
COG categoryS
BRITEko00000
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil8702Gchil8702Gracilaria chilensis NLEC103_M9 malegenetig00000088_pilon 1354609..1355319 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil8702.t1.start1Gchil8702.t1.start1Gracilaria chilensis NLEC103_M9 malestart_codontig00000088_pilon 1354609..1354611 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil8702.t1.CDS1Gchil8702.t1.CDS1Gracilaria chilensis NLEC103_M9 maleCDStig00000088_pilon 1354609..1355319 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil8702.t1.exon1Gchil8702.t1.exon1Gracilaria chilensis NLEC103_M9 maleexontig00000088_pilon 1354609..1355319 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil8702.t1.stop1Gchil8702.t1.stop1Gracilaria chilensis NLEC103_M9 malestop_codontig00000088_pilon 1355317..1355319 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil8702.t1Gchil8702.t1Gracilaria chilensis NLEC103_M9 malepolypeptidetig00000088_pilon 1354609..1355319 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gchil8702.t1 ID=Gchil8702.t1|Name=Gchil8702.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=237bp
MTFTRTALFSASALLLFAMALSQSNAQIPRTVSVSGEGSVSAPPDTATVS
TGVVTTAVTAQAALSANNQQFQQVLAVLEEQGIESKDVQTSFFNVNPQFQ
RGPNGEDQGIIGYQVTNQVQVVVRNLDSLGGILDALVSAGSNRISGVNFS
IGNDTELRNRARSLAVVDATARAGVYATAAGLEVGKLIAISEQTIQPQFR
ESFGAGGAGAASLVPIATGELEVQATIFLQFELKED*
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spliced messenger RNA

>Gchil8702.t1 ID=Gchil8702.t1|Name=Gchil8702.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=711bp|location=Sequence derived from alignment at tig00000088_pilon:1354609..1355319+ (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGACTTTCACTAGGACAGCACTATTCTCAGCTTCTGCGTTGCTCTTGTT
TGCCATGGCCCTAAGTCAATCAAATGCCCAAATACCCCGCACCGTCAGTG
TTTCCGGTGAAGGAAGTGTTTCCGCACCTCCGGATACGGCCACAGTTAGC
ACCGGAGTGGTTACGACGGCGGTCACGGCTCAGGCAGCACTGTCTGCTAA
CAACCAGCAGTTTCAACAAGTCTTGGCCGTGCTCGAAGAACAAGGAATCG
AAAGCAAAGACGTTCAGACGAGTTTCTTCAACGTAAATCCTCAGTTTCAG
CGTGGGCCGAATGGTGAAGATCAAGGTATTATCGGTTATCAAGTGACAAA
TCAAGTACAAGTGGTTGTTCGAAATTTGGATAGCTTGGGCGGGATTTTGG
ATGCGCTTGTTTCTGCGGGCAGCAACCGCATTTCCGGTGTGAACTTTAGT
ATAGGCAATGACACTGAACTCCGTAACCGTGCTCGCTCTTTGGCTGTTGT
GGATGCCACAGCGCGTGCTGGAGTTTATGCCACAGCGGCTGGACTTGAGG
TTGGGAAGCTGATTGCTATCAGTGAACAAACGATTCAGCCACAGTTCCGG
GAATCATTCGGTGCCGGCGGGGCAGGAGCAGCTTCATTAGTACCGATTGC
CACTGGAGAGCTTGAAGTTCAAGCCACCATCTTCCTTCAGTTTGAGCTCA
AAGAAGATTGA
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protein sequence of Gchil8702.t1

>Gchil8702.t1 ID=Gchil8702.t1|Name=Gchil8702.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=237bp
MTFTRTALFSASALLLFAMALSQSNAQIPRTVSVSGEGSVSAPPDTATVS
TGVVTTAVTAQAALSANNQQFQQVLAVLEEQGIESKDVQTSFFNVNPQFQ
RGPNGEDQGIIGYQVTNQVQVVVRNLDSLGGILDALVSAGSNRISGVNFS
IGNDTELRNRARSLAVVDATARAGVYATAAGLEVGKLIAISEQTIQPQFR
ESFGAGGAGAASLVPIATGELEVQATIFLQFELKED*
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mRNA from alignment at tig00000088_pilon:1354609..1355319+

Legend: start_codonpolypeptideCDSexonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gchil8702.t1 ID=Gchil8702.t1|Name=Gchil8702.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=711bp|location=Sequence derived from alignment at tig00000088_pilon:1354609..1355319+ (Gracilaria chilensis NLEC103_M9 male)
ATGACTTTCACTAGGACAGCACTATTCTCAGCTTCTGCGTTGCTCTTGTT
TGCCATGGCCCTAAGTCAATCAAATGCCCAAATACCCCGCACCGTCAGTG
TTTCCGGTGAAGGAAGTGTTTCCGCACCTCCGGATACGGCCACAGTTAGC
ACCGGAGTGGTTACGACGGCGGTCACGGCTCAGGCAGCACTGTCTGCTAA
CAACCAGCAGTTTCAACAAGTCTTGGCCGTGCTCGAAGAACAAGGAATCG
AAAGCAAAGACGTTCAGACGAGTTTCTTCAACGTAAATCCTCAGTTTCAG
CGTGGGCCGAATGGTGAAGATCAAGGTATTATCGGTTATCAAGTGACAAA
TCAAGTACAAGTGGTTGTTCGAAATTTGGATAGCTTGGGCGGGATTTTGG
ATGCGCTTGTTTCTGCGGGCAGCAACCGCATTTCCGGTGTGAACTTTAGT
ATAGGCAATGACACTGAACTCCGTAACCGTGCTCGCTCTTTGGCTGTTGT
GGATGCCACAGCGCGTGCTGGAGTTTATGCCACAGCGGCTGGACTTGAGG
TTGGGAAGCTGATTGCTATCAGTGAACAAACGATTCAGCCACAGTTCCGG
GAATCATTCGGTGCCGGCGGGGCAGGAGCAGCTTCATTAGTACCGATTGC
CACTGGAGAGCTTGAAGTTCAAGCCACCATCTTCCTTCAGTTTGAGCTCA
AAGAAGATTGA
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Coding sequence (CDS) from alignment at tig00000088_pilon:1354609..1355319+

>Gchil8702.t1 ID=Gchil8702.t1|Name=Gchil8702.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=711bp|location=Sequence derived from alignment at tig00000088_pilon:1354609..1355319+ (Gracilaria chilensis NLEC103_M9 male)
ATGACTTTCACTAGGACAGCACTATTCTCAGCTTCTGCGTTGCTCTTGTT
TGCCATGGCCCTAAGTCAATCAAATGCCCAAATACCCCGCACCGTCAGTG
TTTCCGGTGAAGGAAGTGTTTCCGCACCTCCGGATACGGCCACAGTTAGC
ACCGGAGTGGTTACGACGGCGGTCACGGCTCAGGCAGCACTGTCTGCTAA
CAACCAGCAGTTTCAACAAGTCTTGGCCGTGCTCGAAGAACAAGGAATCG
AAAGCAAAGACGTTCAGACGAGTTTCTTCAACGTAAATCCTCAGTTTCAG
CGTGGGCCGAATGGTGAAGATCAAGGTATTATCGGTTATCAAGTGACAAA
TCAAGTACAAGTGGTTGTTCGAAATTTGGATAGCTTGGGCGGGATTTTGG
ATGCGCTTGTTTCTGCGGGCAGCAACCGCATTTCCGGTGTGAACTTTAGT
ATAGGCAATGACACTGAACTCCGTAACCGTGCTCGCTCTTTGGCTGTTGT
GGATGCCACAGCGCGTGCTGGAGTTTATGCCACAGCGGCTGGACTTGAGG
TTGGGAAGCTGATTGCTATCAGTGAACAAACGATTCAGCCACAGTTCCGG
GAATCATTCGGTGCCGGCGGGGCAGGAGCAGCTTCATTAGTACCGATTGC
CACTGGAGAGCTTGAAGTTCAAGCCACCATCTTCCTTCAGTTTGAGCTCA
AAGAAGATTGA
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